Wall clock time and date at job start Tue Mar 31 2020 21:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.53000 * 109.46803 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46550 * 180.02562 * 4 3 2 6 6 C 1.36906 * 120.00179 * 90.00051 * 5 4 3 7 7 H 1.08000 * 119.99982 * 14.95983 * 6 5 4 8 8 C 1.38826 * 120.00026 * 194.68196 * 6 5 4 9 9 N 1.31543 * 120.00320 * 195.03438 * 8 6 5 10 10 Si 1.86805 * 119.99788 * 15.03245 * 8 6 5 11 11 H 1.48494 * 109.47284 * 63.58924 * 10 8 6 12 12 H 1.48496 * 109.46851 * 183.58696 * 10 8 6 13 13 H 1.48497 * 109.47205 * 303.58537 * 10 8 6 14 14 C 1.38207 * 119.99738 * 269.99608 * 5 4 3 15 15 N 1.33099 * 120.85062 * 80.18438 * 14 5 4 16 16 C 1.31983 * 121.02957 * 179.97438 * 15 14 5 17 17 N 1.31626 * 122.75267 * 0.02612 * 16 15 14 18 18 C 1.33118 * 120.72913 * 359.97206 * 17 16 15 19 19 N 1.36813 * 134.32232 * 179.97438 * 18 17 16 20 20 H 0.96996 * 124.99468 * 359.97438 * 19 18 17 21 21 C 1.37051 * 110.01596 * 180.02562 * 19 18 17 22 22 C 1.34392 * 109.82310 * 359.97438 * 21 19 18 23 23 S 1.76205 * 126.58780 * 179.97438 * 22 21 19 24 24 C 1.81403 * 104.44684 * 98.78004 * 23 22 21 25 25 O 1.42101 * 104.27756 * 214.84740 * 23 22 21 26 26 O 1.42095 * 104.27831 * 342.71112 * 23 22 21 27 27 C 1.40384 * 120.85295 * 259.90087 * 14 5 4 28 28 H 1.09008 * 109.47059 * 300.00095 * 1 2 3 29 29 H 1.09006 * 109.47757 * 59.99548 * 1 2 3 30 30 H 1.08998 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46587 * 240.00438 * 2 1 3 32 32 H 1.08993 * 109.47126 * 120.00565 * 2 1 3 33 33 H 1.08995 * 109.46962 * 60.00044 * 3 2 1 34 34 H 1.09005 * 109.47141 * 300.00273 * 3 2 1 35 35 H 1.08997 * 109.47466 * 60.00596 * 4 3 2 36 36 H 1.08996 * 109.47274 * 299.99789 * 4 3 2 37 37 H 0.96999 * 120.00137 * 174.99743 * 9 8 6 38 38 H 1.07999 * 118.62615 * 179.97438 * 16 15 14 39 39 H 1.08003 * 125.08695 * 179.97438 * 21 19 18 40 40 H 1.09002 * 109.47397 * 65.53300 * 24 23 22 41 41 H 1.08997 * 109.47295 * 185.54001 * 24 23 22 42 42 H 1.09005 * 109.47105 * 305.53561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4684 1.1859 7 1 4.3442 2.9042 2.1050 8 6 4.4511 4.8468 1.2062 9 7 4.9570 5.4333 2.2694 10 14 3.9534 5.8686 -0.2763 11 1 2.4883 5.7522 -0.4884 12 1 4.3076 7.2909 -0.0385 13 1 4.6686 5.3749 -1.4804 14 6 4.2882 3.4758 -1.1967 15 7 3.2839 4.0142 -1.8845 16 6 3.4994 4.6382 -3.0274 17 7 4.6992 4.7668 -3.5533 18 6 5.7680 4.2623 -2.9407 19 7 7.1062 4.2314 -3.2237 20 1 7.5175 4.6219 -4.0106 21 6 7.7801 3.5666 -2.2326 22 6 6.9146 3.1531 -1.2914 23 16 7.3060 2.2568 0.1743 24 6 7.3641 3.5197 1.4752 25 8 6.1928 1.3946 0.3658 26 8 8.6042 1.7336 -0.0710 27 6 5.5876 3.5926 -1.7149 28 1 -0.3633 0.5139 0.8900 29 1 -0.3635 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 5.1393 6.3860 2.2572 38 1 2.6560 5.0603 -3.5535 39 1 8.8470 3.4001 -2.2113 40 1 6.3699 3.9445 1.6140 41 1 7.6987 3.0655 2.4079 42 1 8.0588 4.3081 1.1854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:52 Heat of formation + Delta-G solvation = 90.095036 kcal Electronic energy + Delta-G solvation = -29657.370536 eV Core-core repulsion = 25769.006003 eV Total energy + Delta-G solvation = -3888.364533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76671 -38.68771 -36.83139 -36.14523 -35.08227 -34.38911 -32.62025 -31.66803 -30.79883 -29.17495 -28.38749 -27.99621 -24.79705 -23.75763 -22.91510 -21.82145 -21.13522 -20.30706 -18.93323 -17.84154 -17.77054 -16.57060 -16.36230 -15.58670 -15.52811 -15.18432 -14.87720 -14.80491 -14.55304 -14.31635 -13.92920 -13.42305 -13.29385 -13.00789 -12.89341 -12.39420 -12.28080 -12.16133 -12.04598 -11.78301 -11.38685 -11.22993 -11.13657 -10.93265 -10.59861 -10.58645 -10.50651 -10.35676 -10.17571 -10.14939 -10.07376 -9.75888 -9.23832 -8.91532 -8.69446 -8.39023 -7.82743 -7.56543 -6.38311 -3.68280 0.93743 1.20473 1.82974 2.46549 2.86323 3.13247 3.41414 3.56098 3.70718 4.26304 4.29334 4.44517 4.62564 4.76709 4.77807 4.93951 5.06528 5.22166 5.40962 5.44912 5.55496 5.62435 5.66653 5.72025 5.81295 6.02392 6.10168 6.20905 6.29350 6.37693 6.38351 6.44805 6.49235 6.63678 6.76790 6.94244 7.08193 7.12364 7.23770 7.30068 7.64478 7.80952 7.89017 8.58399 8.83385 9.29590 9.54418 10.66424 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.007214 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.628444 B = 3880.298114 C = 4420.675155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.146 4.146 4 C 0.167 3.833 5 N -0.513 5.513 6 C -0.249 4.249 7 H 0.118 0.882 8 C 0.021 3.979 9 N -0.884 5.884 10 Si 0.872 3.128 11 H -0.260 1.260 12 H -0.316 1.316 13 H -0.264 1.264 14 C 0.455 3.545 15 N -0.558 5.558 16 C 0.324 3.676 17 N -0.557 5.557 18 C 0.319 3.681 19 N -0.568 5.568 20 H 0.419 0.581 21 C 0.155 3.845 22 C -0.683 4.683 23 S 2.518 3.482 24 C -0.659 4.659 25 O -0.917 6.917 26 O -0.980 6.980 27 C -0.133 4.133 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.275 0.725 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.200 0.800 41 H 0.116 0.884 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 -4.096 -6.358 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.185 4.185 4 C 0.042 3.958 5 N -0.224 5.224 6 C -0.377 4.377 7 H 0.136 0.864 8 C -0.180 4.180 9 N -0.524 5.524 10 Si 0.705 3.295 11 H -0.186 1.186 12 H -0.247 1.247 13 H -0.190 1.190 14 C 0.214 3.786 15 N -0.284 5.284 16 C 0.033 3.967 17 N -0.281 5.281 18 C 0.081 3.919 19 N -0.174 5.174 20 H 0.257 0.743 21 C 0.023 3.977 22 C -0.778 4.778 23 S 2.697 3.303 24 C -0.810 4.810 25 O -0.914 6.914 26 O -0.977 6.977 27 C -0.146 4.146 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.204 0.796 39 H 0.210 0.790 40 H 0.217 0.783 41 H 0.134 0.866 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.552 -4.434 -6.711 8.439 hybrid contribution 0.449 1.774 -0.957 2.065 sum 3.001 -2.660 -7.668 8.653 Atomic orbital electron populations 1.21754 0.96696 1.00514 1.01615 1.21478 0.95102 0.98081 1.01318 1.22299 0.98656 0.94942 1.02637 1.21088 0.90315 0.82613 1.01740 1.41789 1.70301 1.11053 0.99237 1.19413 1.43038 0.89790 0.85470 0.86415 1.25315 0.99044 0.96452 0.97225 1.69594 1.42705 1.12254 1.27896 0.87323 0.82135 0.77585 0.82460 1.18644 1.24687 1.19030 1.17476 0.85564 0.88186 0.87368 1.68616 1.37077 1.13427 1.09253 1.24037 0.91632 0.92497 0.88504 1.67277 0.97845 1.25630 1.37381 1.18355 0.85377 0.95970 0.92173 1.41713 1.04550 1.48749 1.22356 0.74319 1.21773 0.97527 0.91657 0.86752 1.31596 0.98400 1.25528 1.22283 1.04529 0.73740 0.76353 0.75638 1.30564 1.17625 1.17498 1.15351 1.93559 1.51269 1.61569 1.84953 1.93474 1.41204 1.77480 1.85529 1.19913 0.93810 1.04436 0.96443 0.92915 0.93157 0.93617 0.92793 0.92274 0.91709 0.92114 0.93510 0.90014 0.91484 0.79636 0.79019 0.78297 0.86578 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.15 -2.64 5.54 -26.73 -0.15 -2.79 16 4 C 0.17 3.34 3.81 -4.04 -0.02 3.33 16 5 N -0.51 -11.50 1.37 -114.72 -0.16 -11.66 16 6 C -0.25 -6.02 7.16 -15.07 -0.11 -6.13 16 7 H 0.12 2.95 8.04 -52.49 -0.42 2.53 16 8 C 0.02 0.54 4.29 -17.46 -0.07 0.46 16 9 N -0.88 -23.11 12.70 55.49 0.70 -22.41 16 10 Si 0.87 21.52 22.61 -169.99 -3.84 17.68 16 11 H -0.26 -6.72 6.92 56.52 0.39 -6.33 16 12 H -0.32 -8.26 7.11 56.52 0.40 -7.86 16 13 H -0.26 -6.10 1.52 56.52 0.09 -6.01 16 14 C 0.45 10.16 3.25 -154.72 -0.50 9.66 16 15 N -0.56 -12.18 7.69 -13.66 -0.11 -12.29 16 16 C 0.32 6.27 10.14 -92.14 -0.93 5.34 16 17 N -0.56 -10.75 10.22 -13.88 -0.14 -10.89 16 18 C 0.32 6.12 7.62 -155.84 -1.19 4.94 16 19 N -0.57 -8.36 6.03 -12.11 -0.07 -8.43 16 20 H 0.42 4.46 8.96 -40.82 -0.37 4.09 16 21 C 0.15 2.26 11.45 -16.58 -0.19 2.07 16 22 C -0.68 -12.58 6.02 -37.81 -0.23 -12.81 16 23 S 2.52 45.86 5.63 -107.50 -0.61 45.26 16 24 C -0.66 -11.92 10.63 101.05 1.07 -10.84 16 25 O -0.92 -18.64 12.83 -57.54 -0.74 -19.38 16 26 O -0.98 -18.22 17.67 -57.54 -1.02 -19.24 16 27 C -0.13 -2.79 5.00 -104.97 -0.52 -3.31 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.93 8.04 -51.93 -0.42 0.52 16 36 H 0.08 1.63 7.36 -51.93 -0.38 1.25 16 37 H 0.27 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.19 2.87 8.06 -52.49 -0.42 2.45 16 39 H 0.19 1.96 8.06 -52.48 -0.42 1.54 16 40 H 0.20 4.34 2.51 -51.92 -0.13 4.21 16 41 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 42 H 0.11 1.71 8.14 -51.92 -0.42 1.29 16 LS Contribution 335.68 15.07 5.06 5.06 Total: -1.00 -31.79 335.68 -9.38 -41.17 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.83 Total: 8.72 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.63 Total: -13.59 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: 0.23 Total: -65.68 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.75 Total: -38.61 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -3.84 Total: 17.68 kcal Atomic # 16 Polarization: 45.86 SS G_CDS: -0.61 Total: 45.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.79 -9.38 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.266 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds