Wall clock time and date at job start Tue Mar 31 2020 21:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47189 * 2 1 4 4 C 1.53000 * 109.46803 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46550 * 180.02562 * 4 3 2 6 6 C 1.36906 * 120.00179 * 90.00051 * 5 4 3 7 7 H 1.08000 * 119.99982 * 14.95983 * 6 5 4 8 8 C 1.38826 * 120.00026 * 194.68196 * 6 5 4 9 9 N 1.31543 * 120.00320 * 195.03438 * 8 6 5 10 10 Si 1.86805 * 119.99788 * 15.03245 * 8 6 5 11 11 H 1.48494 * 109.47284 * 63.58924 * 10 8 6 12 12 H 1.48496 * 109.46851 * 183.58696 * 10 8 6 13 13 H 1.48497 * 109.47205 * 303.58537 * 10 8 6 14 14 C 1.38207 * 119.99738 * 269.99608 * 5 4 3 15 15 N 1.33099 * 120.85062 * 80.18438 * 14 5 4 16 16 C 1.31983 * 121.02957 * 179.97438 * 15 14 5 17 17 N 1.31626 * 122.75267 * 0.02612 * 16 15 14 18 18 C 1.33118 * 120.72913 * 359.97206 * 17 16 15 19 19 N 1.36813 * 134.32232 * 179.97438 * 18 17 16 20 20 H 0.96996 * 124.99468 * 359.97438 * 19 18 17 21 21 C 1.37051 * 110.01596 * 180.02562 * 19 18 17 22 22 C 1.34392 * 109.82310 * 359.97438 * 21 19 18 23 23 S 1.76205 * 126.58780 * 179.97438 * 22 21 19 24 24 C 1.81403 * 104.44684 * 98.78004 * 23 22 21 25 25 O 1.42101 * 104.27756 * 214.84740 * 23 22 21 26 26 O 1.42095 * 104.27831 * 342.71112 * 23 22 21 27 27 C 1.40384 * 120.85295 * 259.90087 * 14 5 4 28 28 H 1.09008 * 109.47059 * 300.00095 * 1 2 3 29 29 H 1.09006 * 109.47757 * 59.99548 * 1 2 3 30 30 H 1.08998 * 109.47617 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46587 * 240.00438 * 2 1 3 32 32 H 1.08993 * 109.47126 * 120.00565 * 2 1 3 33 33 H 1.08995 * 109.46962 * 60.00044 * 3 2 1 34 34 H 1.09005 * 109.47141 * 300.00273 * 3 2 1 35 35 H 1.08997 * 109.47466 * 60.00596 * 4 3 2 36 36 H 1.08996 * 109.47274 * 299.99789 * 4 3 2 37 37 H 0.96999 * 120.00137 * 174.99743 * 9 8 6 38 38 H 1.07999 * 118.62615 * 179.97438 * 16 15 14 39 39 H 1.08003 * 125.08695 * 179.97438 * 21 19 18 40 40 H 1.09002 * 109.47397 * 65.53300 * 24 23 22 41 41 H 1.08997 * 109.47295 * 185.54001 * 24 23 22 42 42 H 1.09005 * 109.47105 * 305.53561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2870 3.4684 1.1859 7 1 4.3442 2.9042 2.1050 8 6 4.4511 4.8468 1.2062 9 7 4.9570 5.4333 2.2694 10 14 3.9534 5.8686 -0.2763 11 1 2.4883 5.7522 -0.4884 12 1 4.3076 7.2909 -0.0385 13 1 4.6686 5.3749 -1.4804 14 6 4.2882 3.4758 -1.1967 15 7 3.2839 4.0142 -1.8845 16 6 3.4994 4.6382 -3.0274 17 7 4.6992 4.7668 -3.5533 18 6 5.7680 4.2623 -2.9407 19 7 7.1062 4.2314 -3.2237 20 1 7.5175 4.6219 -4.0106 21 6 7.7801 3.5666 -2.2326 22 6 6.9146 3.1531 -1.2914 23 16 7.3060 2.2568 0.1743 24 6 7.3641 3.5197 1.4752 25 8 6.1928 1.3946 0.3658 26 8 8.6042 1.7336 -0.0710 27 6 5.5876 3.5926 -1.7149 28 1 -0.3633 0.5139 0.8900 29 1 -0.3635 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 5.1393 6.3860 2.2572 38 1 2.6560 5.0603 -3.5535 39 1 8.8470 3.4001 -2.2113 40 1 6.3699 3.9445 1.6140 41 1 7.6987 3.0655 2.4079 42 1 8.0588 4.3081 1.1854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:51 Heat of formation + Delta-G solvation = 67.684644 kcal Electronic energy + Delta-G solvation = -29658.342324 eV Core-core repulsion = 25769.006003 eV Total energy + Delta-G solvation = -3889.336321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30089 -40.19985 -38.42411 -37.61541 -36.56340 -35.78567 -34.34662 -33.26077 -32.25946 -30.62021 -29.81674 -29.46055 -26.49243 -25.23015 -24.45065 -23.23016 -22.55899 -21.72541 -20.54392 -19.39347 -19.27015 -18.22779 -17.92051 -17.18013 -16.92403 -16.63284 -16.35620 -16.20334 -16.10906 -15.82208 -15.55895 -14.89640 -14.67303 -14.58330 -14.35654 -13.93877 -13.75786 -13.68043 -13.48432 -13.20126 -12.91018 -12.74233 -12.66779 -12.58133 -12.14515 -12.06465 -11.96864 -11.86600 -11.73944 -11.71734 -11.57019 -11.24651 -10.94659 -10.63281 -10.27454 -10.06734 -9.42404 -9.25191 -8.25370 -5.56565 -0.46708 -0.29145 0.21391 1.02159 1.17974 1.39867 1.53488 1.57323 2.31479 2.33711 2.68078 2.82586 3.06034 3.20991 3.37317 3.39225 3.71536 3.81728 4.01751 4.19387 4.21974 4.30115 4.34881 4.43951 4.44589 4.60383 4.71620 4.90751 4.97984 4.99022 5.04714 5.08334 5.14234 5.26123 5.44621 5.47884 5.57817 5.64269 5.71812 5.85624 5.91000 6.02236 6.41843 6.79611 7.20973 7.53542 7.78620 8.82926 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010089 B = 0.007214 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.628444 B = 3880.298114 C = 4420.675155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.135 4.135 4 C 0.173 3.827 5 N -0.533 5.533 6 C -0.229 4.229 7 H 0.100 0.900 8 C -0.007 4.007 9 N -0.919 5.919 10 Si 0.894 3.106 11 H -0.285 1.285 12 H -0.343 1.343 13 H -0.238 1.238 14 C 0.447 3.553 15 N -0.577 5.577 16 C 0.310 3.690 17 N -0.542 5.542 18 C 0.307 3.693 19 N -0.548 5.548 20 H 0.443 0.557 21 C 0.207 3.793 22 C -0.726 4.726 23 S 2.540 3.460 24 C -0.666 4.666 25 O -0.943 6.943 26 O -0.981 6.981 27 C -0.153 4.153 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.266 0.734 38 H 0.222 0.778 39 H 0.248 0.752 40 H 0.172 0.828 41 H 0.131 0.869 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -4.960 -9.015 11.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.175 4.175 4 C 0.049 3.951 5 N -0.248 5.248 6 C -0.358 4.358 7 H 0.117 0.883 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.730 3.270 11 H -0.212 1.212 12 H -0.276 1.276 13 H -0.164 1.164 14 C 0.207 3.793 15 N -0.302 5.302 16 C 0.020 3.980 17 N -0.265 5.265 18 C 0.067 3.933 19 N -0.156 5.156 20 H 0.286 0.714 21 C 0.074 3.926 22 C -0.821 4.821 23 S 2.720 3.280 24 C -0.818 4.818 25 O -0.941 6.941 26 O -0.978 6.978 27 C -0.166 4.166 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.238 0.762 39 H 0.264 0.736 40 H 0.189 0.811 41 H 0.150 0.850 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.361 -5.303 -9.465 11.693 hybrid contribution 0.011 1.965 -0.431 2.011 sum 4.372 -3.339 -9.896 11.322 Atomic orbital electron populations 1.21721 0.95190 1.01927 1.01395 1.21438 0.96392 0.95582 1.02041 1.22157 0.97416 0.97009 1.00894 1.21014 0.91268 0.81588 1.01238 1.41699 1.72701 1.11563 0.98821 1.19123 1.41578 0.89305 0.85838 0.88265 1.25355 1.00493 0.96856 0.97680 1.69648 1.46239 1.11536 1.28943 0.87059 0.80720 0.75783 0.83404 1.21225 1.27619 1.16380 1.17796 0.86519 0.87628 0.87324 1.68569 1.37693 1.13780 1.10110 1.24789 0.92844 0.92142 0.88237 1.67396 0.97958 1.24360 1.36739 1.18682 0.87061 0.95764 0.91801 1.41754 1.02739 1.47929 1.23182 0.71377 1.22699 0.99166 0.86814 0.83966 1.31590 0.98120 1.28398 1.23987 1.03743 0.73018 0.75848 0.75394 1.30580 1.16561 1.18186 1.16468 1.93523 1.52332 1.62796 1.85405 1.93462 1.41055 1.77649 1.85664 1.20239 0.94332 1.04667 0.97356 0.93239 0.93332 0.91353 0.91997 0.91583 0.93617 0.93537 0.93741 0.90645 0.92411 0.76205 0.73597 0.81095 0.85025 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.12 -3.36 5.93 30.59 0.18 -3.17 16 3 C -0.14 -5.00 5.54 30.60 0.17 -4.83 16 4 C 0.17 7.07 3.81 86.38 0.33 7.40 16 5 N -0.53 -24.40 1.37 -516.86 -0.71 -25.11 16 6 C -0.23 -11.52 7.16 84.04 0.60 -10.92 16 7 H 0.10 5.26 8.04 -2.91 -0.02 5.24 16 8 C -0.01 -0.34 4.29 84.88 0.36 0.02 16 9 N -0.92 -50.21 12.70 21.65 0.27 -49.94 16 10 Si 0.89 45.12 22.61 68.60 1.55 46.67 16 11 H -0.28 -15.20 6.92 99.48 0.69 -14.51 16 12 H -0.34 -18.55 7.11 99.48 0.71 -17.85 16 13 H -0.24 -10.84 1.52 99.48 0.15 -10.69 16 14 C 0.45 19.86 3.25 133.43 0.43 20.30 16 15 N -0.58 -24.95 7.69 -197.14 -1.52 -26.47 16 16 C 0.31 11.45 10.14 180.88 1.83 13.28 16 17 N -0.54 -19.37 10.22 -197.82 -2.02 -21.39 16 18 C 0.31 10.77 7.62 134.00 1.02 11.79 16 19 N -0.55 -13.35 6.03 -192.21 -1.16 -14.51 16 20 H 0.44 6.83 8.96 -92.71 -0.83 6.00 16 21 C 0.21 4.95 11.45 83.00 0.95 5.90 16 22 C -0.73 -24.66 6.02 23.42 0.14 -24.52 16 23 S 2.54 88.51 5.63 -56.49 -0.32 88.19 16 24 C -0.67 -23.68 10.63 113.37 1.21 -22.47 16 25 O -0.94 -38.26 12.83 -127.65 -1.64 -39.90 16 26 O -0.98 -33.59 17.67 -127.65 -2.26 -35.84 16 27 C -0.15 -6.13 5.00 -20.09 -0.10 -6.23 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.04 1.79 8.04 -2.39 -0.02 1.77 16 36 H 0.08 3.12 7.36 -2.39 -0.02 3.10 16 37 H 0.27 14.37 8.32 -92.71 -0.77 13.60 16 38 H 0.22 6.30 8.06 -2.91 -0.02 6.28 16 39 H 0.25 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.17 7.57 2.51 -2.39 -0.01 7.57 16 41 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 42 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 Total: -1.00 -71.84 335.68 -0.29 -72.13 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.34 Total: 22.53 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 7.84 Total: -16.35 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -5.13 Total: -137.43 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: -3.89 Total: -75.74 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.55 Total: 46.67 kcal Atomic # 16 Polarization: 88.51 SS G_CDS: -0.32 Total: 88.19 kcal Total: -71.84 -0.29 -72.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.815 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds