Wall clock time and date at job start Tue Mar 31 2020 20:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30936 * 122.90842 * 2 1 4 4 C 1.29431 * 117.36647 * 180.31152 * 3 2 1 5 5 S 1.70948 * 110.38696 * 359.70093 * 4 3 2 6 6 C 1.35660 * 122.90054 * 179.75875 * 2 1 3 7 7 C 1.46682 * 126.13285 * 0.02562 * 6 2 1 8 8 O 1.21693 * 119.99899 * 359.71351 * 7 6 2 9 9 N 1.34773 * 120.00215 * 179.97438 * 7 6 2 10 10 C 1.47027 * 125.64926 * 359.75226 * 9 7 6 11 11 C 1.54324 * 107.27233 * 181.01722 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.08998 * 111.00413 * 82.56454 * 12 11 10 14 14 N 1.46897 * 111.00289 * 206.42217 * 12 11 10 15 15 C 1.46901 * 110.99997 * 204.99618 * 14 12 11 16 16 C 1.50701 * 109.47545 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99452 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00129 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99800 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00366 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00118 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00244 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47231 * 89.99740 * 23 21 19 25 25 H 1.48501 * 109.46945 * 210.00085 * 23 21 19 26 26 H 1.48499 * 109.46668 * 329.99886 * 23 21 19 27 27 C 1.47430 * 125.65196 * 179.44094 * 9 7 6 28 28 H 1.09001 * 109.46959 * 270.24385 * 1 2 3 29 29 H 1.09003 * 109.46870 * 30.23700 * 1 2 3 30 30 H 1.08997 * 109.47372 * 150.24002 * 1 2 3 31 31 H 1.07995 * 124.80582 * 179.70501 * 4 3 2 32 32 H 1.09000 * 109.87929 * 300.44156 * 10 9 7 33 33 H 1.09004 * 109.88144 * 61.60465 * 10 9 7 34 34 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 35 35 H 1.08994 * 110.72184 * 263.82631 * 11 10 9 36 36 H 1.00899 * 111.00205 * 81.04919 * 14 12 11 37 37 H 1.09007 * 109.47033 * 299.99978 * 15 14 12 38 38 H 1.09005 * 109.47233 * 59.99753 * 15 14 12 39 39 H 0.96998 * 120.00418 * 359.97438 * 18 16 15 40 40 H 0.96999 * 120.00012 * 180.02562 * 22 21 19 41 41 H 1.08999 * 110.36600 * 274.74978 * 27 9 7 42 42 H 1.09003 * 110.36161 * 37.06595 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5067 0.9743 -0.0062 5 16 3.9447 -0.6781 -0.0048 6 6 2.2439 -1.1390 0.0048 7 6 1.7191 -2.5087 0.0100 8 8 0.5172 -2.6997 0.0156 9 7 2.5678 -3.5556 0.0140 10 6 4.0355 -3.4689 0.0084 11 6 4.5797 -4.9129 -0.0102 12 6 3.3896 -5.7254 -0.5853 13 1 3.3716 -5.6746 -1.6739 14 7 3.4335 -7.1201 -0.1260 15 6 2.7338 -8.0061 -1.0658 16 6 2.8002 -9.4251 -0.5628 17 8 3.3736 -9.6738 0.4767 18 7 2.2225 -10.4178 -1.2680 19 6 2.2834 -11.7088 -0.8106 20 1 2.7940 -11.9303 0.1150 21 6 1.6883 -12.7323 -1.5378 22 7 1.0666 -12.4628 -2.6638 23 14 1.7707 -14.4913 -0.9142 24 1 0.5983 -14.7636 -0.0444 25 1 1.7591 -15.4264 -2.0678 26 1 3.0202 -14.6820 -0.1348 27 6 2.1784 -4.9775 0.0311 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5101 31 1 4.2058 1.7973 -0.0116 32 1 4.3718 -2.9344 -0.8800 33 1 4.3798 -2.9545 0.9057 34 1 5.4496 -4.9887 -0.6627 35 1 4.8228 -5.2464 0.9986 36 1 3.0524 -7.2066 0.8043 37 1 1.6915 -7.6979 -1.1483 38 1 3.2092 -7.9454 -2.0449 39 1 1.7636 -10.2189 -2.0991 40 1 0.6508 -13.1773 -3.1713 41 1 2.0043 -5.3108 1.0542 42 1 1.2871 -5.1339 -0.5765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181153806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:51 Heat of formation + Delta-G solvation = -13.206929 kcal Electronic energy + Delta-G solvation = -25919.580622 eV Core-core repulsion = 22026.736579 eV Total energy + Delta-G solvation = -3892.844042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79474 -39.91332 -38.43352 -37.66661 -34.88437 -33.83853 -32.27823 -31.36309 -31.05765 -29.42223 -28.22773 -26.17218 -25.42908 -24.26274 -23.39751 -21.61279 -20.95488 -19.36937 -18.91097 -18.84866 -17.94436 -17.09806 -16.74252 -16.31151 -15.88121 -15.62457 -15.21023 -14.82701 -14.51649 -14.43328 -14.18999 -14.02745 -13.80534 -13.69307 -13.22191 -13.05513 -12.89423 -12.79447 -12.63964 -12.36193 -12.01351 -11.82538 -11.68536 -11.52146 -11.45019 -11.06165 -11.04782 -10.41004 -10.39070 -10.24218 -10.00740 -9.95223 -9.53675 -9.39915 -8.93044 -8.54585 -8.18867 -7.99312 -6.44085 -3.85143 -0.16438 0.78269 1.16052 2.05339 2.50475 2.80344 3.16460 3.25485 3.31204 3.72570 3.86332 3.93311 4.09168 4.21231 4.36965 4.52642 4.62378 4.70726 4.73728 4.90169 5.03138 5.11861 5.17856 5.23573 5.37493 5.42346 5.48033 5.54179 5.55149 5.70541 5.77601 5.80746 5.91254 5.91917 6.01980 6.22054 7.02784 7.05655 7.21162 7.48002 7.53074 7.72733 8.03122 8.57719 9.15046 9.50930 10.01750 10.73477 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029930 B = 0.001913 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.291877 B =14629.892865 C =15252.113239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.146 3.854 3 N -0.477 5.477 4 C 0.020 3.980 5 S 0.180 5.820 6 C -0.295 4.295 7 C 0.610 3.390 8 O -0.521 6.521 9 N -0.610 5.610 10 C 0.086 3.914 11 C -0.115 4.115 12 C 0.077 3.923 13 H 0.096 0.904 14 N -0.651 5.651 15 C 0.047 3.953 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.078 3.922 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.204 0.796 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.354 0.646 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.076 0.924 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 26.531 1.980 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.008 3.992 3 N -0.191 5.191 4 C -0.275 4.275 5 S 0.436 5.564 6 C -0.419 4.419 7 C 0.398 3.602 8 O -0.399 6.399 9 N -0.344 5.344 10 C -0.038 4.038 11 C -0.153 4.153 12 C -0.035 4.035 13 H 0.114 0.886 14 N -0.282 5.282 15 C -0.085 4.085 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.198 5.198 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.046 4.046 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.220 0.780 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.175 0.825 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.867 26.078 2.280 27.063 hybrid contribution -1.883 -0.292 -0.113 1.908 sum 4.984 25.786 2.167 26.353 Atomic orbital electron populations 1.20684 0.85864 1.04597 1.03826 1.20763 0.98839 0.85005 0.94602 1.66193 1.05085 1.31375 1.16471 1.28946 0.95483 1.02088 1.01011 1.84231 1.05314 1.01484 1.65410 1.25410 0.96340 0.98782 1.21383 1.16283 0.85336 0.81760 0.76841 1.90819 1.13787 1.84570 1.50770 1.48179 1.06845 1.06352 1.73019 1.22301 0.79876 0.99588 1.02057 1.22625 0.98370 0.90650 1.03677 1.22874 0.92484 0.88190 0.99934 0.88620 1.60148 1.59558 1.02401 1.06125 1.21772 0.96909 0.92941 0.96876 1.19746 0.84790 0.86056 0.86920 1.90529 1.47412 1.83735 1.25165 1.41860 1.48516 1.06624 1.22834 1.19702 1.33259 0.82154 1.07841 0.87877 1.25280 0.96547 1.00479 0.95655 1.69613 1.35973 1.34128 1.14474 0.85847 0.78897 0.81373 0.78111 1.20403 1.20911 1.19384 1.23261 1.00065 0.79273 1.02008 0.89998 0.90645 0.88135 0.77985 0.90682 0.90657 0.89040 0.89349 0.82527 0.93497 0.89333 0.77421 0.91827 0.90630 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.69 36.01 0.35 -0.55 16 2 C 0.15 1.57 6.79 -83.89 -0.57 1.00 16 3 N -0.48 -4.75 10.50 -11.53 -0.12 -4.87 16 4 C 0.02 0.13 12.22 51.75 0.63 0.76 16 5 S 0.18 1.18 18.69 -107.50 -2.01 -0.83 16 6 C -0.30 -3.09 6.40 -37.10 -0.24 -3.33 16 7 C 0.61 7.57 7.81 -12.85 -0.10 7.47 16 8 O -0.52 -7.91 14.53 5.20 0.08 -7.83 16 9 N -0.61 -6.52 3.33 -171.91 -0.57 -7.09 16 10 C 0.09 0.67 5.19 -3.06 -0.02 0.65 16 11 C -0.11 -0.97 6.64 -24.90 -0.17 -1.13 16 12 C 0.08 0.83 3.40 -65.45 -0.22 0.61 16 13 H 0.10 0.99 7.83 -51.93 -0.41 0.58 16 14 N -0.65 -9.39 6.04 -105.60 -0.64 -10.02 16 15 C 0.05 0.78 6.03 -4.97 -0.03 0.75 16 16 C 0.44 10.03 7.82 -10.99 -0.09 9.95 16 17 O -0.58 -15.41 15.78 5.55 0.09 -15.32 16 18 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.08 0.88 6.51 -2.41 -0.02 0.86 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.13 6.01 -51.93 -0.31 0.81 16 31 H 0.20 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.08 0.49 6.88 -51.93 -0.36 0.14 16 33 H 0.08 0.51 7.02 -51.93 -0.36 0.14 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.35 5.33 7.89 -39.29 -0.31 5.02 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 39 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 42 H 0.08 1.02 8.03 -51.93 -0.42 0.61 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -33.73 363.38 -8.12 -41.85 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.36 Total: 11.27 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.70 Total: 9.13 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.66 Total: -59.60 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.16 Total: -23.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.01 Total: -0.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.73 -8.12 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181153806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.647 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds