Wall clock time and date at job start Tue Mar 31 2020 20:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30936 * 122.90842 * 2 1 4 4 C 1.29431 * 117.36647 * 180.31152 * 3 2 1 5 5 S 1.70948 * 110.38696 * 359.70093 * 4 3 2 6 6 C 1.35660 * 122.90054 * 179.75875 * 2 1 3 7 7 C 1.46682 * 126.13285 * 0.02562 * 6 2 1 8 8 O 1.21693 * 119.99899 * 359.71351 * 7 6 2 9 9 N 1.34773 * 120.00215 * 179.97438 * 7 6 2 10 10 C 1.47027 * 125.64926 * 359.75226 * 9 7 6 11 11 C 1.54324 * 107.27233 * 181.01722 * 10 9 7 12 12 C 1.55156 * 102.94272 * 22.19672 * 11 10 9 13 13 H 1.08998 * 111.00413 * 82.56454 * 12 11 10 14 14 N 1.46897 * 111.00289 * 206.42217 * 12 11 10 15 15 C 1.46901 * 110.99997 * 204.99618 * 14 12 11 16 16 C 1.50701 * 109.47545 * 179.97438 * 15 14 12 17 17 O 1.21294 * 119.99452 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00129 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99800 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00366 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00118 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99916 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00244 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47231 * 89.99740 * 23 21 19 25 25 H 1.48501 * 109.46945 * 210.00085 * 23 21 19 26 26 H 1.48499 * 109.46668 * 329.99886 * 23 21 19 27 27 C 1.47430 * 125.65196 * 179.44094 * 9 7 6 28 28 H 1.09001 * 109.46959 * 270.24385 * 1 2 3 29 29 H 1.09003 * 109.46870 * 30.23700 * 1 2 3 30 30 H 1.08997 * 109.47372 * 150.24002 * 1 2 3 31 31 H 1.07995 * 124.80582 * 179.70501 * 4 3 2 32 32 H 1.09000 * 109.87929 * 300.44156 * 10 9 7 33 33 H 1.09004 * 109.88144 * 61.60465 * 10 9 7 34 34 H 1.09003 * 110.71776 * 140.55450 * 11 10 9 35 35 H 1.08994 * 110.72184 * 263.82631 * 11 10 9 36 36 H 1.00899 * 111.00205 * 81.04919 * 14 12 11 37 37 H 1.09007 * 109.47033 * 299.99978 * 15 14 12 38 38 H 1.09005 * 109.47233 * 59.99753 * 15 14 12 39 39 H 0.96998 * 120.00418 * 359.97438 * 18 16 15 40 40 H 0.96999 * 120.00012 * 180.02562 * 22 21 19 41 41 H 1.08999 * 110.36600 * 274.74978 * 27 9 7 42 42 H 1.09003 * 110.36161 * 37.06595 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5067 0.9743 -0.0062 5 16 3.9447 -0.6781 -0.0048 6 6 2.2439 -1.1390 0.0048 7 6 1.7191 -2.5087 0.0100 8 8 0.5172 -2.6997 0.0156 9 7 2.5678 -3.5556 0.0140 10 6 4.0355 -3.4689 0.0084 11 6 4.5797 -4.9129 -0.0102 12 6 3.3896 -5.7254 -0.5853 13 1 3.3716 -5.6746 -1.6739 14 7 3.4335 -7.1201 -0.1260 15 6 2.7338 -8.0061 -1.0658 16 6 2.8002 -9.4251 -0.5628 17 8 3.3736 -9.6738 0.4767 18 7 2.2225 -10.4178 -1.2680 19 6 2.2834 -11.7088 -0.8106 20 1 2.7940 -11.9303 0.1150 21 6 1.6883 -12.7323 -1.5378 22 7 1.0666 -12.4628 -2.6638 23 14 1.7707 -14.4913 -0.9142 24 1 0.5983 -14.7636 -0.0444 25 1 1.7591 -15.4264 -2.0678 26 1 3.0202 -14.6820 -0.1348 27 6 2.1784 -4.9775 0.0311 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5101 31 1 4.2058 1.7973 -0.0116 32 1 4.3718 -2.9344 -0.8800 33 1 4.3798 -2.9545 0.9057 34 1 5.4496 -4.9887 -0.6627 35 1 4.8228 -5.2464 0.9986 36 1 3.0524 -7.2066 0.8043 37 1 1.6915 -7.6979 -1.1483 38 1 3.2092 -7.9454 -2.0449 39 1 1.7636 -10.2189 -2.0991 40 1 0.6508 -13.1773 -3.1713 41 1 2.0043 -5.3108 1.0542 42 1 1.2871 -5.1339 -0.5765 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181153806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:50 Heat of formation + Delta-G solvation = -39.601661 kcal Electronic energy + Delta-G solvation = -25920.725183 eV Core-core repulsion = 22026.736579 eV Total energy + Delta-G solvation = -3893.988604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58764 -40.70015 -40.08692 -38.74587 -36.24421 -35.60371 -33.28081 -32.99235 -32.07644 -30.24525 -29.21264 -27.62834 -26.13603 -25.71738 -24.37300 -22.37173 -21.84373 -21.11191 -19.94041 -19.63373 -19.55296 -18.01161 -17.77512 -17.33727 -17.06796 -16.79691 -16.39767 -16.19894 -15.82397 -15.53827 -15.33758 -15.12393 -14.84790 -14.61335 -14.30815 -14.16430 -13.96131 -13.68568 -13.53991 -13.49731 -13.37065 -13.22766 -12.89872 -12.72125 -12.47087 -12.41144 -12.33237 -12.11648 -11.79981 -11.50456 -11.26922 -10.67014 -10.61092 -10.34911 -10.13624 -10.01553 -9.66803 -9.39876 -8.46562 -5.95272 -0.81528 0.18148 0.56288 1.33009 1.38310 1.42303 1.54936 1.67515 1.98385 2.05328 2.29269 2.86161 3.15015 3.20770 3.28605 3.46127 3.63923 3.73249 3.97512 3.98956 4.12658 4.16901 4.24896 4.32125 4.42477 4.50819 4.57774 4.63934 4.68495 4.71040 4.72206 4.82050 4.99621 5.11917 5.17193 5.25642 5.41421 5.86224 6.06818 6.20903 6.29709 6.57294 6.59642 6.84571 7.12629 7.56375 8.11108 8.70715 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029930 B = 0.001913 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.291877 B =14629.892865 C =15252.113239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.135 3.865 3 N -0.507 5.507 4 C 0.027 3.973 5 S 0.247 5.753 6 C -0.331 4.331 7 C 0.604 3.396 8 O -0.563 6.563 9 N -0.610 5.610 10 C 0.085 3.915 11 C -0.107 4.107 12 C 0.081 3.919 13 H 0.106 0.894 14 N -0.659 5.659 15 C 0.062 3.938 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.080 3.920 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.348 0.652 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.069 0.931 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 27.942 1.523 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.004 4.004 3 N -0.222 5.222 4 C -0.266 4.266 5 S 0.504 5.496 6 C -0.454 4.454 7 C 0.393 3.607 8 O -0.445 6.445 9 N -0.343 5.343 10 C -0.038 4.038 11 C -0.145 4.145 12 C -0.030 4.030 13 H 0.124 0.876 14 N -0.290 5.290 15 C -0.070 4.070 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.045 4.045 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.168 0.832 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.919 27.511 1.803 28.977 hybrid contribution -2.417 -0.631 0.056 2.499 sum 6.502 26.880 1.859 27.718 Atomic orbital electron populations 1.20603 0.86417 1.04082 1.03667 1.20868 0.99136 0.85660 0.94747 1.66240 1.06468 1.31134 1.18368 1.29675 0.95088 1.03660 0.98177 1.83854 1.01409 1.00430 1.63879 1.25336 0.99327 0.97582 1.23199 1.16621 0.85038 0.82783 0.76280 1.90787 1.15574 1.85366 1.52733 1.48233 1.08072 1.05665 1.72293 1.22498 0.77915 0.99648 1.03739 1.22615 0.97874 0.90198 1.03804 1.22922 0.93378 0.86163 1.00520 0.87578 1.60190 1.59159 1.04119 1.05503 1.21636 0.98640 0.88997 0.97764 1.20845 0.82642 0.88098 0.85869 1.90497 1.48600 1.84953 1.26830 1.41942 1.49352 1.06461 1.23320 1.19667 1.34681 0.84023 1.07858 0.90203 1.26055 0.95734 1.03941 0.95694 1.69675 1.36051 1.35405 1.15011 0.84924 0.78729 0.76783 0.77893 1.19759 1.19602 1.19656 1.23148 0.99850 0.80080 1.01426 0.90041 0.89693 0.89954 0.74124 0.88773 0.89077 0.87101 0.89620 0.83190 0.91736 0.87170 0.76977 0.91330 0.91267 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.69 71.24 0.69 -1.15 16 2 C 0.14 2.86 6.79 42.10 0.29 3.14 16 3 N -0.51 -9.26 10.50 -190.41 -2.00 -11.26 16 4 C 0.03 0.28 12.22 130.60 1.60 1.88 16 5 S 0.25 2.46 18.69 -56.49 -1.06 1.40 16 6 C -0.33 -6.61 6.40 23.88 0.15 -6.46 16 7 C 0.60 15.01 7.81 86.45 0.68 15.68 16 8 O -0.56 -17.96 14.53 -4.33 -0.06 -18.03 16 9 N -0.61 -12.44 3.33 -816.01 -2.71 -15.15 16 10 C 0.09 1.08 5.19 86.73 0.45 1.53 16 11 C -0.11 -1.50 6.64 31.78 0.21 -1.29 16 12 C 0.08 1.61 3.40 46.38 0.16 1.76 16 13 H 0.11 1.92 7.83 -2.39 -0.02 1.90 16 14 N -0.66 -18.30 6.04 -488.00 -2.95 -21.25 16 15 C 0.06 1.97 6.03 85.56 0.52 2.49 16 16 C 0.44 20.18 7.82 87.66 0.69 20.87 16 17 O -0.62 -33.50 15.78 -3.07 -0.05 -33.54 16 18 N -0.57 -28.99 5.29 -306.99 -1.62 -30.62 16 19 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.77 5.50 84.92 0.47 -0.31 16 22 N -0.92 -49.56 13.05 21.66 0.28 -49.27 16 23 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.08 1.76 6.51 86.93 0.57 2.32 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.01 6.01 -2.39 -0.01 1.99 16 31 H 0.24 0.30 8.06 -2.91 -0.02 0.27 16 32 H 0.09 0.88 6.88 -2.39 -0.02 0.86 16 33 H 0.09 0.91 7.02 -2.38 -0.02 0.90 16 34 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.35 10.42 7.89 -89.69 -0.71 9.71 16 37 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.11 3.09 8.09 -2.38 -0.02 3.07 16 39 H 0.40 19.05 7.90 -92.71 -0.73 18.32 16 40 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 41 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 42 H 0.07 1.70 8.03 -2.39 -0.02 1.69 16 Total: -1.00 -75.57 363.38 -1.23 -76.79 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: -0.35 Total: 33.58 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: 7.27 Total: 22.55 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -9.00 Total: -127.56 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.11 Total: -51.57 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.06 Total: 1.40 kcal Total: -75.57 -1.23 -76.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181153806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.191 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds