Wall clock time and date at job start Tue Mar 31 2020 20:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29513 * 121.53086 * 2 1 4 4 S 1.69477 * 107.84866 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.02299 * 359.97438 * 4 3 2 6 6 C 1.37901 * 105.36790 * 359.97438 * 5 4 3 7 7 C 1.47341 * 123.08970 * 179.72657 * 6 5 4 8 8 O 1.21612 * 119.99897 * 173.45451 * 7 6 5 9 9 N 1.34775 * 119.99683 * 353.45929 * 7 6 5 10 10 C 1.47019 * 125.65123 * 4.85175 * 9 7 6 11 11 C 1.54324 * 107.27389 * 181.02415 * 10 9 7 12 12 C 1.55163 * 102.94267 * 22.19240 * 11 10 9 13 13 H 1.09002 * 111.00229 * 82.56864 * 12 11 10 14 14 N 1.46897 * 111.00571 * 206.38956 * 12 11 10 15 15 C 1.46893 * 110.99815 * 204.99931 * 14 12 11 16 16 C 1.50709 * 109.47368 * 179.97438 * 15 14 12 17 17 O 1.21298 * 119.99117 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00514 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00352 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00065 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00216 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99783 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46978 * 120.00320 * 23 21 19 26 26 H 1.48503 * 109.46909 * 239.99635 * 23 21 19 27 27 C 1.47428 * 125.64533 * 184.54342 * 9 7 6 28 28 H 1.09004 * 109.47072 * 269.97363 * 1 2 3 29 29 H 1.09000 * 109.47387 * 29.97524 * 1 2 3 30 30 H 1.09003 * 109.46980 * 149.98199 * 1 2 3 31 31 H 1.07998 * 127.31718 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.88288 * 300.44152 * 10 9 7 33 33 H 1.08999 * 109.88525 * 61.60539 * 10 9 7 34 34 H 1.09002 * 110.72275 * 140.55242 * 11 10 9 35 35 H 1.08994 * 110.71979 * 263.83025 * 11 10 9 36 36 H 1.00901 * 111.00177 * 81.04017 * 14 12 11 37 37 H 1.09001 * 109.47467 * 299.99278 * 15 14 12 38 38 H 1.08999 * 109.47845 * 60.00014 * 15 14 12 39 39 H 0.97006 * 119.99749 * 359.97438 * 18 16 15 40 40 H 0.97000 * 119.99637 * 179.97438 * 22 21 19 41 41 H 1.08998 * 110.36756 * 274.74232 * 27 9 7 42 42 H 1.08997 * 110.36571 * 37.06886 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7030 -0.0007 5 6 3.6017 -1.0018 -0.0003 6 6 2.2352 -1.1868 0.0010 7 6 1.6036 -2.5180 -0.0041 8 8 0.3978 -2.6194 0.1174 9 7 2.3623 -3.6232 -0.1433 10 6 3.8312 -3.6530 -0.1977 11 6 4.2529 -5.1251 -0.3890 12 6 2.9822 -5.7742 -0.9987 13 1 2.9349 -5.6051 -2.0745 14 7 2.9247 -7.2094 -0.6909 15 6 2.1251 -7.9304 -1.6902 16 6 2.0894 -9.3964 -1.3424 17 8 2.6731 -9.8006 -0.3589 18 7 1.4099 -10.2582 -2.1246 19 6 1.3779 -11.5918 -1.8085 20 1 1.8969 -11.9518 -0.9324 21 6 0.6768 -12.4803 -2.6146 22 7 0.0441 -12.0421 -3.6797 23 14 0.6326 -14.2973 -2.1834 24 1 1.4169 -14.5312 -0.9443 25 1 -0.7741 -14.7202 -1.9655 26 1 1.2193 -15.0848 -3.2974 27 6 1.8568 -5.0032 -0.2599 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 4.3657 -1.7651 -0.0009 32 1 4.1832 -3.0543 -1.0378 33 1 4.2446 -3.2671 0.7341 34 1 5.0928 -5.1990 -1.0798 35 1 4.4984 -5.5835 0.5688 36 1 2.5670 -7.3656 0.2396 37 1 1.1099 -7.5338 -1.6982 38 1 2.5732 -7.8020 -2.6755 39 1 0.9434 -9.9349 -2.9112 40 1 -0.4450 -12.6624 -4.2427 41 1 1.6874 -5.4299 0.7287 42 1 0.9373 -5.0222 -0.8449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182067874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:49 Heat of formation + Delta-G solvation = -7.429587 kcal Electronic energy + Delta-G solvation = -25976.868522 eV Core-core repulsion = 22084.275003 eV Total energy + Delta-G solvation = -3892.593518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98244 -39.18768 -38.27059 -37.56352 -35.02289 -33.87845 -32.38296 -31.28054 -30.86847 -29.88288 -28.78106 -26.39344 -25.37798 -23.98120 -22.94685 -21.46122 -20.86986 -19.91122 -19.35133 -18.08180 -17.89920 -17.20414 -16.70409 -16.03664 -15.84271 -15.54720 -15.18485 -14.99911 -14.52390 -14.39044 -14.14630 -13.87111 -13.79648 -13.52066 -13.16471 -13.01165 -12.77455 -12.71941 -12.67204 -12.35809 -11.95435 -11.82767 -11.59272 -11.52268 -11.36872 -11.13110 -11.08341 -11.03279 -10.36560 -10.25564 -10.19510 -10.11079 -9.55534 -9.24224 -8.95700 -8.55432 -8.19696 -8.00129 -6.45002 -3.85971 -0.02927 0.91346 1.30776 1.44035 2.52074 2.84812 3.14334 3.25357 3.32369 3.85253 3.90011 4.00968 4.09858 4.20043 4.34991 4.48551 4.56674 4.66354 4.81817 4.88138 5.00059 5.04194 5.09168 5.13819 5.22605 5.31466 5.39405 5.46975 5.54274 5.69169 5.75473 5.78713 5.86412 5.90681 5.95929 6.21084 6.23818 7.04876 7.08889 7.47067 7.52527 7.76904 8.02538 8.56843 9.14369 9.50134 10.00870 10.72646 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.001861 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.058041 B =15040.773813 C =15641.334659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.166 3.834 3 N -0.470 5.470 4 S 0.285 5.715 5 C -0.190 4.190 6 C -0.207 4.207 7 C 0.598 3.402 8 O -0.527 6.527 9 N -0.606 5.606 10 C 0.088 3.912 11 C -0.122 4.122 12 C 0.077 3.923 13 H 0.095 0.905 14 N -0.651 5.651 15 C 0.048 3.952 16 C 0.439 3.561 17 O -0.584 6.584 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.078 3.922 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.208 0.792 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.354 0.646 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.075 0.925 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 24.890 4.169 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.011 4.011 3 N -0.290 5.290 4 S 0.440 5.560 5 C -0.339 4.339 6 C -0.228 4.228 7 C 0.385 3.615 8 O -0.404 6.404 9 N -0.340 5.340 10 C -0.035 4.035 11 C -0.160 4.160 12 C -0.035 4.035 13 H 0.113 0.887 14 N -0.283 5.283 15 C -0.085 4.085 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.047 4.047 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.224 0.776 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.175 0.825 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.470 26.437 4.460 28.116 hybrid contribution -1.902 -2.073 -0.133 2.816 sum 6.568 24.364 4.327 25.602 Atomic orbital electron populations 1.20880 0.85248 1.04898 1.04407 1.21465 0.99643 0.86595 0.93425 1.76495 1.00281 1.26145 1.26108 1.84117 1.10844 0.95930 1.65073 1.28400 1.00177 1.04963 1.00331 1.20334 0.92230 0.95795 1.14456 1.16950 0.85757 0.82025 0.76763 1.90773 1.13516 1.85992 1.50167 1.48151 1.07173 1.06507 1.72169 1.22567 0.80514 0.99200 1.01259 1.22705 0.98346 0.91742 1.03224 1.22870 0.93023 0.87817 0.99781 0.88682 1.60147 1.56527 1.04952 1.06643 1.21768 0.96027 0.94128 0.96562 1.19753 0.84540 0.86970 0.86258 1.90531 1.48342 1.78768 1.29197 1.41867 1.45376 1.07527 1.25083 1.19753 1.30250 0.82150 1.10754 0.87819 1.25281 0.96437 1.00711 0.95556 1.69620 1.33364 1.36140 1.15050 0.85792 0.77988 0.81895 0.78621 1.19194 1.20753 1.20724 1.23258 0.99304 0.80690 1.01421 0.89583 0.90705 0.87513 0.77584 0.90622 0.90694 0.89149 0.89421 0.82530 0.93501 0.89353 0.77427 0.91874 0.90692 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.43 36.01 0.34 -0.54 16 2 C 0.17 1.72 6.75 -83.20 -0.56 1.16 16 3 N -0.47 -4.88 11.97 32.50 0.39 -4.49 16 4 S 0.28 2.07 23.69 -107.50 -2.55 -0.48 16 5 C -0.19 -1.30 9.70 30.61 0.30 -1.01 16 6 C -0.21 -2.01 5.85 -105.95 -0.62 -2.63 16 7 C 0.60 6.87 7.78 -12.56 -0.10 6.77 16 8 O -0.53 -7.52 14.14 5.27 0.07 -7.44 16 9 N -0.61 -5.91 3.32 -171.67 -0.57 -6.48 16 10 C 0.09 0.57 4.91 -3.07 -0.02 0.55 16 11 C -0.12 -0.93 6.65 -24.89 -0.17 -1.10 16 12 C 0.08 0.79 3.40 -65.44 -0.22 0.57 16 13 H 0.10 0.94 7.83 -51.93 -0.41 0.53 16 14 N -0.65 -9.20 6.04 -105.59 -0.64 -9.84 16 15 C 0.05 0.77 6.03 -4.98 -0.03 0.74 16 16 C 0.44 9.96 7.82 -10.98 -0.09 9.87 16 17 O -0.58 -15.33 15.78 5.54 0.09 -15.24 16 18 N -0.56 -13.89 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 23 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 C 0.08 0.82 6.49 -2.40 -0.02 0.81 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.11 1.13 5.81 -51.93 -0.30 0.83 16 31 H 0.21 0.83 4.03 -52.49 -0.21 0.62 16 32 H 0.08 0.36 6.68 -51.93 -0.35 0.02 16 33 H 0.08 0.37 6.93 -51.93 -0.36 0.01 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 5.24 7.89 -39.29 -0.31 4.93 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 39 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.07 0.83 7.76 -51.93 -0.40 0.42 16 42 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -33.21 361.30 -8.66 -41.87 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.12 Total: 10.99 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.42 Total: 7.32 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.15 Total: -58.25 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.16 Total: -22.68 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.55 Total: -0.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.21 -8.66 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182067874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.444 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds