Wall clock time and date at job start Tue Mar 31 2020 20:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29513 * 121.53086 * 2 1 4 4 S 1.69477 * 107.84866 * 180.02562 * 3 2 1 5 5 C 1.72018 * 96.02299 * 359.97438 * 4 3 2 6 6 C 1.37901 * 105.36790 * 359.97438 * 5 4 3 7 7 C 1.47341 * 123.08970 * 179.72657 * 6 5 4 8 8 O 1.21612 * 119.99897 * 173.45451 * 7 6 5 9 9 N 1.34775 * 119.99683 * 353.45929 * 7 6 5 10 10 C 1.47019 * 125.65123 * 4.85175 * 9 7 6 11 11 C 1.54324 * 107.27389 * 181.02415 * 10 9 7 12 12 C 1.55163 * 102.94267 * 22.19240 * 11 10 9 13 13 H 1.09002 * 111.00229 * 82.56864 * 12 11 10 14 14 N 1.46897 * 111.00571 * 206.38956 * 12 11 10 15 15 C 1.46893 * 110.99815 * 204.99931 * 14 12 11 16 16 C 1.50709 * 109.47368 * 179.97438 * 15 14 12 17 17 O 1.21298 * 119.99117 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00514 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00352 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00065 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00216 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99783 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47200 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46978 * 120.00320 * 23 21 19 26 26 H 1.48503 * 109.46909 * 239.99635 * 23 21 19 27 27 C 1.47428 * 125.64533 * 184.54342 * 9 7 6 28 28 H 1.09004 * 109.47072 * 269.97363 * 1 2 3 29 29 H 1.09000 * 109.47387 * 29.97524 * 1 2 3 30 30 H 1.09003 * 109.46980 * 149.98199 * 1 2 3 31 31 H 1.07998 * 127.31718 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.88288 * 300.44152 * 10 9 7 33 33 H 1.08999 * 109.88525 * 61.60539 * 10 9 7 34 34 H 1.09002 * 110.72275 * 140.55242 * 11 10 9 35 35 H 1.08994 * 110.71979 * 263.83025 * 11 10 9 36 36 H 1.00901 * 111.00177 * 81.04017 * 14 12 11 37 37 H 1.09001 * 109.47467 * 299.99278 * 15 14 12 38 38 H 1.08999 * 109.47845 * 60.00014 * 15 14 12 39 39 H 0.97006 * 119.99749 * 359.97438 * 18 16 15 40 40 H 0.97000 * 119.99637 * 179.97438 * 22 21 19 41 41 H 1.08998 * 110.36756 * 274.74232 * 27 9 7 42 42 H 1.08997 * 110.36571 * 37.06886 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7030 -0.0007 5 6 3.6017 -1.0018 -0.0003 6 6 2.2352 -1.1868 0.0010 7 6 1.6036 -2.5180 -0.0041 8 8 0.3978 -2.6194 0.1174 9 7 2.3623 -3.6232 -0.1433 10 6 3.8312 -3.6530 -0.1977 11 6 4.2529 -5.1251 -0.3890 12 6 2.9822 -5.7742 -0.9987 13 1 2.9349 -5.6051 -2.0745 14 7 2.9247 -7.2094 -0.6909 15 6 2.1251 -7.9304 -1.6902 16 6 2.0894 -9.3964 -1.3424 17 8 2.6731 -9.8006 -0.3589 18 7 1.4099 -10.2582 -2.1246 19 6 1.3779 -11.5918 -1.8085 20 1 1.8969 -11.9518 -0.9324 21 6 0.6768 -12.4803 -2.6146 22 7 0.0441 -12.0421 -3.6797 23 14 0.6326 -14.2973 -2.1834 24 1 1.4169 -14.5312 -0.9443 25 1 -0.7741 -14.7202 -1.9655 26 1 1.2193 -15.0848 -3.2974 27 6 1.8568 -5.0032 -0.2599 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 4.3657 -1.7651 -0.0009 32 1 4.1832 -3.0543 -1.0378 33 1 4.2446 -3.2671 0.7341 34 1 5.0928 -5.1990 -1.0798 35 1 4.4984 -5.5835 0.5688 36 1 2.5670 -7.3656 0.2396 37 1 1.1099 -7.5338 -1.6982 38 1 2.5732 -7.8020 -2.6755 39 1 0.9434 -9.9349 -2.9112 40 1 -0.4450 -12.6624 -4.2427 41 1 1.6874 -5.4299 0.7287 42 1 0.9373 -5.0222 -0.8449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182067874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:48 Heat of formation + Delta-G solvation = -32.894236 kcal Electronic energy + Delta-G solvation = -25977.972752 eV Core-core repulsion = 22084.275003 eV Total energy + Delta-G solvation = -3893.697748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74025 -40.27618 -39.66247 -38.49945 -36.27971 -35.65576 -33.33100 -33.09175 -31.65689 -30.60273 -29.72154 -27.80056 -26.36786 -25.43780 -23.68865 -22.20188 -21.69296 -21.10021 -20.58108 -19.92458 -18.72917 -18.09515 -17.70905 -17.27759 -16.94462 -16.53745 -16.36749 -16.08688 -15.87855 -15.67868 -15.28846 -15.04689 -14.71171 -14.45253 -14.19835 -14.04878 -13.91277 -13.52109 -13.49414 -13.39037 -13.32847 -13.21004 -12.89683 -12.56289 -12.44090 -12.39429 -12.12304 -12.06877 -11.79863 -11.71648 -11.50989 -10.95667 -10.84900 -10.34407 -10.01287 -9.95927 -9.63629 -9.37106 -8.46634 -5.95168 -0.64507 0.32427 0.65755 0.68598 1.36986 1.42552 1.56539 1.75884 2.05660 2.06825 2.29465 2.88571 3.20868 3.32051 3.40608 3.51836 3.69228 3.80605 3.87145 4.02166 4.19322 4.20982 4.29548 4.33251 4.39446 4.45041 4.54712 4.59046 4.61862 4.65734 4.73047 4.76837 5.03605 5.16870 5.17855 5.25087 5.41848 5.54232 5.88276 6.08365 6.31097 6.34850 6.59903 6.96178 7.12996 7.56757 8.11535 8.70895 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.001861 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.058041 B =15040.773813 C =15641.334659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.155 3.845 3 N -0.505 5.505 4 S 0.331 5.669 5 C -0.165 4.165 6 C -0.232 4.232 7 C 0.594 3.406 8 O -0.568 6.568 9 N -0.605 5.605 10 C 0.084 3.916 11 C -0.114 4.114 12 C 0.080 3.920 13 H 0.105 0.895 14 N -0.660 5.660 15 C 0.062 3.938 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.080 3.920 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.347 0.653 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.066 0.934 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 25.904 3.734 27.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.022 4.022 3 N -0.327 5.327 4 S 0.487 5.513 5 C -0.314 4.314 6 C -0.253 4.253 7 C 0.382 3.618 8 O -0.449 6.449 9 N -0.338 5.338 10 C -0.038 4.038 11 C -0.152 4.152 12 C -0.031 4.031 13 H 0.123 0.877 14 N -0.291 5.291 15 C -0.070 4.070 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.196 1.196 27 C -0.045 4.045 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.255 0.745 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.497 27.475 4.004 29.683 hybrid contribution -2.419 -2.299 0.033 3.337 sum 8.079 25.176 4.038 26.747 Atomic orbital electron populations 1.20798 0.85643 1.04457 1.04247 1.21533 0.99900 0.87007 0.93754 1.76338 1.02441 1.26779 1.27112 1.83973 1.08333 0.95455 1.63524 1.28780 0.99516 1.05761 0.97362 1.20179 0.93335 0.94592 1.17169 1.17238 0.85450 0.82893 0.76243 1.90751 1.15306 1.86626 1.52179 1.48184 1.08628 1.05570 1.71382 1.22852 0.78354 0.98930 1.03674 1.22691 0.97392 0.91951 1.03168 1.22938 0.94341 0.85384 1.00471 0.87696 1.60197 1.55896 1.07239 1.05768 1.21628 0.97823 0.89595 0.97951 1.20875 0.82398 0.89337 0.84861 1.90499 1.49483 1.80225 1.30709 1.41950 1.46264 1.07161 1.25737 1.19700 1.31601 0.83962 1.10884 0.90229 1.26048 0.95619 1.04519 0.95244 1.69679 1.33460 1.37551 1.15461 0.84870 0.78220 0.76962 0.78292 1.19706 1.19777 1.19608 1.23114 0.99007 0.81615 1.00778 0.89659 0.89910 0.89045 0.74474 0.87926 0.88262 0.87327 0.89931 0.83263 0.91755 0.87222 0.76976 0.91339 0.91549 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.43 71.24 0.67 -1.10 16 2 C 0.15 3.13 6.75 43.14 0.29 3.42 16 3 N -0.51 -9.91 11.97 -51.09 -0.61 -10.52 16 4 S 0.33 3.88 23.69 -56.49 -1.34 2.54 16 5 C -0.17 -1.70 9.70 67.74 0.66 -1.05 16 6 C -0.23 -4.16 5.85 -20.72 -0.12 -4.28 16 7 C 0.59 13.26 7.78 86.64 0.67 13.93 16 8 O -0.57 -16.76 14.14 -4.07 -0.06 -16.82 16 9 N -0.61 -10.74 3.32 -815.31 -2.71 -13.45 16 10 C 0.08 0.76 4.91 86.73 0.43 1.18 16 11 C -0.11 -1.37 6.65 31.78 0.21 -1.16 16 12 C 0.08 1.47 3.40 46.39 0.16 1.63 16 13 H 0.10 1.77 7.83 -2.39 -0.02 1.75 16 14 N -0.66 -17.89 6.04 -487.99 -2.95 -20.84 16 15 C 0.06 1.96 6.03 85.56 0.52 2.47 16 16 C 0.44 20.03 7.82 87.66 0.69 20.72 16 17 O -0.62 -33.36 15.78 -3.08 -0.05 -33.41 16 18 N -0.57 -28.85 5.29 -306.98 -1.62 -30.47 16 19 C -0.33 -18.63 9.68 84.04 0.81 -17.81 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 22 N -0.92 -49.36 13.05 21.66 0.28 -49.08 16 23 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 C 0.08 1.64 6.49 86.93 0.56 2.20 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 2.08 5.81 -2.39 -0.01 2.07 16 31 H 0.24 0.68 4.03 -2.91 -0.01 0.67 16 32 H 0.10 0.45 6.68 -2.39 -0.02 0.43 16 33 H 0.10 0.49 6.93 -2.39 -0.02 0.47 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.35 10.22 7.89 -89.69 -0.71 9.51 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.11 3.02 8.09 -2.39 -0.02 3.00 16 39 H 0.40 18.94 7.90 -92.70 -0.73 18.20 16 40 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.07 1.47 7.76 -2.39 -0.02 1.45 16 42 H 0.07 1.56 8.08 -2.39 -0.02 1.54 16 Total: -1.00 -74.44 361.30 -1.35 -75.79 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.34 Total: 31.76 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.01 Total: 19.84 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -7.61 Total: -124.37 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.11 Total: -50.23 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 3.88 SS G_CDS: -1.34 Total: 2.54 kcal Total: -74.44 -1.35 -75.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182067874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.899 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds