Wall clock time and date at job start Tue Mar 31 2020 20:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27576 * 126.41436 * 2 1 4 4 N 1.39146 * 113.16085 * 180.02562 * 3 2 1 5 5 C 1.39503 * 124.44039 * 179.97438 * 4 3 2 6 6 C 1.39538 * 120.03104 * 0.02562 * 5 4 3 7 7 C 1.38337 * 118.01479 * 180.02562 * 6 5 4 8 8 C 1.39943 * 117.96249 * 0.25102 * 7 6 5 9 9 C 1.48182 * 120.11553 * 179.72741 * 8 7 6 10 10 C 1.39343 * 120.16571 * 359.73276 * 9 8 7 11 11 C 1.37991 * 119.93925 * 179.69928 * 10 9 8 12 12 C 1.38455 * 120.27821 * 0.59219 * 11 10 9 13 13 C 1.38103 * 120.33638 * 359.68431 * 12 11 10 14 14 C 1.38763 * 120.05282 * 0.02562 * 13 12 11 15 15 O 1.35652 * 120.14104 * 179.97438 * 14 13 12 16 16 C 1.34811 * 116.99621 * 354.39798 * 15 14 13 17 17 H 1.08004 * 120.00419 * 5.06616 * 16 15 14 18 18 C 1.38647 * 120.00096 * 185.06409 * 16 15 14 19 19 N 1.31563 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00311 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46702 * 60.00323 * 20 18 16 22 22 H 1.48503 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47058 * 299.99958 * 20 18 16 24 24 N 1.32701 * 119.76953 * 359.48765 * 8 7 6 25 25 N 1.28353 * 122.10955 * 0.53783 * 24 8 7 26 26 C 1.34958 * 111.12282 * 0.22796 * 4 3 2 27 27 O 1.21294 * 127.49674 * 179.74674 * 26 4 3 28 28 C 1.51436 * 126.41646 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47148 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47047 * 119.97394 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.97611 * 1 2 3 32 32 H 1.07995 * 120.98994 * 0.02562 * 6 5 4 33 33 H 1.08003 * 121.01436 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.02366 * 359.96891 * 10 9 8 35 35 H 1.08005 * 119.85776 * 180.31789 * 11 10 9 36 36 H 1.08003 * 119.83513 * 179.69537 * 12 11 10 37 37 H 1.08002 * 119.97549 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00004 * 180.02562 * 19 18 16 39 39 H 1.09003 * 110.60626 * 298.47738 * 28 2 1 40 40 H 1.09001 * 110.61162 * 61.28996 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0006 5 6 4.6505 1.6466 -0.0012 6 6 4.3538 3.0101 -0.0008 7 6 5.4090 3.9047 -0.0020 8 6 6.7088 3.3862 -0.0090 9 6 7.8743 4.3013 -0.0167 10 6 7.6810 5.6812 -0.0226 11 6 8.7697 6.5291 -0.0234 12 6 10.0551 6.0147 -0.0308 13 6 10.2599 4.6490 -0.0308 14 6 9.1752 3.7836 -0.0239 15 8 9.3743 2.4418 -0.0245 16 6 10.6459 2.0119 -0.1491 17 1 11.4580 2.7237 -0.1603 18 6 10.9112 0.6558 -0.2628 19 7 9.9219 -0.2114 -0.2495 20 14 12.6732 0.0599 -0.4347 21 1 13.4561 0.4801 0.7552 22 1 12.6870 -1.4215 -0.5378 23 1 13.2773 0.6473 -1.6575 24 7 6.8940 2.0722 -0.0039 25 7 5.9127 1.2448 -0.0028 26 6 3.8035 -0.6292 -0.0060 27 8 4.8579 -1.2288 -0.0122 28 6 2.4060 -1.2186 -0.0005 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3633 -0.5142 0.8898 32 1 3.3309 3.3566 0.0005 33 1 5.2349 4.9706 -0.0021 34 1 6.6800 6.0867 -0.0220 35 1 8.6184 7.5985 -0.0228 36 1 10.9020 6.6849 -0.0364 37 1 11.2651 4.2541 -0.0362 38 1 10.1075 -1.1602 -0.3287 39 1 2.2423 -1.8166 0.8960 40 1 2.2394 -1.8180 -0.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:44 Heat of formation + Delta-G solvation = 109.229518 kcal Electronic energy + Delta-G solvation = -27974.953665 eV Core-core repulsion = 23951.974914 eV Total energy + Delta-G solvation = -4022.978751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62315 -40.19701 -38.82347 -37.53784 -36.39769 -34.54951 -32.97901 -32.31133 -31.66425 -29.70377 -29.50815 -28.96742 -27.71003 -25.43844 -24.39433 -23.91598 -21.74107 -21.23180 -20.74178 -19.85387 -18.12482 -17.86775 -17.25473 -16.69885 -16.68098 -15.65836 -15.29131 -14.97955 -14.61837 -14.55992 -14.37425 -14.04161 -13.95901 -13.92083 -13.57710 -13.52913 -13.25405 -12.88186 -12.78534 -12.48016 -12.42538 -12.27957 -11.63678 -11.41086 -11.36351 -11.06990 -10.87452 -10.73810 -10.48861 -10.40758 -10.28378 -9.83136 -9.81298 -9.30506 -8.81980 -8.78724 -8.68303 -7.80446 -7.06503 -6.34150 -3.92993 0.99287 1.36100 1.37181 2.00043 2.19751 2.38841 2.80132 3.16982 3.19057 3.21813 3.54851 3.74193 3.99646 4.17764 4.48610 4.66779 4.69611 4.86328 4.88308 4.98708 5.03528 5.05519 5.12156 5.15385 5.19149 5.26428 5.44672 5.57515 5.64547 5.70452 5.78143 5.93855 6.09028 6.15626 6.25143 6.48820 6.63711 6.69093 6.83143 7.08289 7.17982 7.33521 7.38078 7.47753 7.76908 7.84481 8.00949 9.02479 9.49146 9.73741 10.76769 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.003718 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.278858 B = 7528.178244 C = 9994.496396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.097 3.903 3 N -0.230 5.230 4 N -0.405 5.405 5 C 0.272 3.728 6 C -0.127 4.127 7 C -0.110 4.110 8 C 0.114 3.886 9 C -0.148 4.148 10 C -0.044 4.044 11 C -0.227 4.227 12 C -0.057 4.057 13 C -0.235 4.235 14 C 0.170 3.830 15 O -0.115 6.115 16 C -0.402 4.402 17 H 0.092 0.908 18 C 0.046 3.954 19 N -0.816 5.816 20 Si 0.937 3.063 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 N -0.154 5.154 25 N -0.223 5.223 26 C 0.489 3.511 27 O -0.431 6.431 28 C -0.172 4.172 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.272 0.728 39 H 0.137 0.863 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.369 3.903 0.303 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 N -0.038 5.038 4 N -0.220 5.220 5 C 0.038 3.962 6 C -0.158 4.158 7 C -0.139 4.139 8 C -0.028 4.028 9 C -0.152 4.152 10 C -0.064 4.064 11 C -0.246 4.246 12 C -0.076 4.076 13 C -0.254 4.254 14 C 0.110 3.890 15 O -0.012 6.012 16 C -0.478 4.478 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.445 5.445 20 Si 0.761 3.239 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 N 0.002 4.998 25 N -0.071 5.071 26 C 0.274 3.726 27 O -0.295 6.295 28 C -0.214 4.214 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.155 0.845 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.672 2.696 0.308 16.892 hybrid contribution 0.008 0.217 -0.092 0.235 sum -16.664 2.912 0.216 16.918 Atomic orbital electron populations 1.20384 0.84178 1.04821 1.04088 1.25439 0.97508 0.90666 0.96028 1.74620 0.87679 1.26956 1.14510 1.46645 1.01691 1.05617 1.68003 1.19852 0.88493 0.87152 1.00689 1.21675 1.01247 0.91108 1.01727 1.22205 0.91734 1.01239 0.98772 1.21510 0.92692 0.92989 0.95659 1.17251 0.88478 0.91292 1.18169 1.20644 0.98210 0.90963 0.96578 1.20426 0.92493 0.98302 1.13418 1.20859 0.96416 0.94486 0.95852 1.21139 0.99322 0.93240 1.11743 1.19323 0.92040 0.85399 0.92212 1.84208 1.29452 1.14759 1.72819 1.21425 0.81429 0.92328 1.52610 0.89034 1.25369 0.99675 0.94912 0.96434 1.70162 1.31049 1.02518 1.40807 0.85859 0.80646 0.78209 0.79159 1.19474 1.20203 1.19477 1.74078 1.18745 1.00096 1.06897 1.73593 0.94099 1.29326 1.10047 1.21465 0.91600 0.82274 0.77291 1.90956 1.30448 1.64797 1.43312 1.22139 0.92369 0.98976 1.07887 0.89668 0.89105 0.89105 0.83253 0.83314 0.86749 0.87285 0.87312 0.85202 0.91746 0.84493 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.50 36.01 0.38 0.11 16 2 C 0.10 0.83 7.59 -78.72 -0.60 0.23 16 3 N -0.23 -2.93 11.22 35.54 0.40 -2.53 16 4 N -0.40 -7.00 3.71 -10.89 -0.04 -7.04 16 5 C 0.27 5.53 7.59 -154.32 -1.17 4.35 16 6 C -0.13 -2.13 9.73 -39.06 -0.38 -2.51 16 7 C -0.11 -1.89 9.54 -38.91 -0.37 -2.26 16 8 C 0.11 2.53 6.81 -82.77 -0.56 1.97 16 9 C -0.15 -3.26 5.89 -104.74 -0.62 -3.88 16 10 C -0.04 -0.79 9.43 -39.26 -0.37 -1.16 16 11 C -0.23 -3.82 10.03 -39.59 -0.40 -4.22 16 12 C -0.06 -1.04 10.03 -39.55 -0.40 -1.43 16 13 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 14 C 0.17 4.25 6.65 -38.72 -0.26 3.99 16 15 O -0.12 -3.37 7.62 0.40 0.00 -3.37 16 16 C -0.40 -11.43 9.49 30.88 0.29 -11.14 16 17 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 18 C 0.05 1.28 5.49 -17.52 -0.10 1.19 16 19 N -0.82 -24.98 13.67 55.48 0.76 -24.22 16 20 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 24 N -0.15 -4.07 9.34 33.36 0.31 -3.76 16 25 N -0.22 -5.64 10.08 31.33 0.32 -5.32 16 26 C 0.49 8.40 8.36 -10.42 -0.09 8.32 16 27 O -0.43 -9.66 16.79 5.55 0.09 -9.57 16 28 C -0.17 -1.62 6.93 -28.19 -0.20 -1.82 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.15 1.97 7.67 -52.49 -0.40 1.57 16 33 H 0.15 1.90 6.29 -52.48 -0.33 1.57 16 34 H 0.11 1.59 6.24 -52.48 -0.33 1.26 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 37 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 38 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 39 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.14 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -38.98 352.72 -6.78 -45.77 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.72 Total: 2.53 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -5.19 Total: -13.76 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 1.74 Total: -42.88 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.10 Total: -12.93 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.98 -6.78 -45.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.996 kcal (2) G-P(sol) polarization free energy of solvation -38.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds