Wall clock time and date at job start Tue Mar 31 2020 20:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27576 * 126.41436 * 2 1 4 4 N 1.39146 * 113.16085 * 180.02562 * 3 2 1 5 5 C 1.39503 * 124.44039 * 179.97438 * 4 3 2 6 6 C 1.39538 * 120.03104 * 0.02562 * 5 4 3 7 7 C 1.38337 * 118.01479 * 180.02562 * 6 5 4 8 8 C 1.39943 * 117.96249 * 0.25102 * 7 6 5 9 9 C 1.48182 * 120.11553 * 179.72741 * 8 7 6 10 10 C 1.39343 * 120.16571 * 359.73276 * 9 8 7 11 11 C 1.37991 * 119.93925 * 179.69928 * 10 9 8 12 12 C 1.38455 * 120.27821 * 0.59219 * 11 10 9 13 13 C 1.38103 * 120.33638 * 359.68431 * 12 11 10 14 14 C 1.38763 * 120.05282 * 0.02562 * 13 12 11 15 15 O 1.35652 * 120.14104 * 179.97438 * 14 13 12 16 16 C 1.34811 * 116.99621 * 354.39798 * 15 14 13 17 17 H 1.08004 * 120.00419 * 5.06616 * 16 15 14 18 18 C 1.38647 * 120.00096 * 185.06409 * 16 15 14 19 19 N 1.31563 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00311 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46702 * 60.00323 * 20 18 16 22 22 H 1.48503 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47058 * 299.99958 * 20 18 16 24 24 N 1.32701 * 119.76953 * 359.48765 * 8 7 6 25 25 N 1.28353 * 122.10955 * 0.53783 * 24 8 7 26 26 C 1.34958 * 111.12282 * 0.22796 * 4 3 2 27 27 O 1.21294 * 127.49674 * 179.74674 * 26 4 3 28 28 C 1.51436 * 126.41646 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47148 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47047 * 119.97394 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.97611 * 1 2 3 32 32 H 1.07995 * 120.98994 * 0.02562 * 6 5 4 33 33 H 1.08003 * 121.01436 * 179.97438 * 7 6 5 34 34 H 1.08003 * 120.02366 * 359.96891 * 10 9 8 35 35 H 1.08005 * 119.85776 * 180.31789 * 11 10 9 36 36 H 1.08003 * 119.83513 * 179.69537 * 12 11 10 37 37 H 1.08002 * 119.97549 * 180.02562 * 13 12 11 38 38 H 0.96996 * 120.00004 * 180.02562 * 19 18 16 39 39 H 1.09003 * 110.60626 * 298.47738 * 28 2 1 40 40 H 1.09001 * 110.61162 * 61.28996 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0267 0.0000 4 7 3.6187 0.7077 -0.0006 5 6 4.6505 1.6466 -0.0012 6 6 4.3538 3.0101 -0.0008 7 6 5.4090 3.9047 -0.0020 8 6 6.7088 3.3862 -0.0090 9 6 7.8743 4.3013 -0.0167 10 6 7.6810 5.6812 -0.0226 11 6 8.7697 6.5291 -0.0234 12 6 10.0551 6.0147 -0.0308 13 6 10.2599 4.6490 -0.0308 14 6 9.1752 3.7836 -0.0239 15 8 9.3743 2.4418 -0.0245 16 6 10.6459 2.0119 -0.1491 17 1 11.4580 2.7237 -0.1603 18 6 10.9112 0.6558 -0.2628 19 7 9.9219 -0.2114 -0.2495 20 14 12.6732 0.0599 -0.4347 21 1 13.4561 0.4801 0.7552 22 1 12.6870 -1.4215 -0.5378 23 1 13.2773 0.6473 -1.6575 24 7 6.8940 2.0722 -0.0039 25 7 5.9127 1.2448 -0.0028 26 6 3.8035 -0.6292 -0.0060 27 8 4.8579 -1.2288 -0.0122 28 6 2.4060 -1.2186 -0.0005 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5134 -0.8902 31 1 -0.3633 -0.5142 0.8898 32 1 3.3309 3.3566 0.0005 33 1 5.2349 4.9706 -0.0021 34 1 6.6800 6.0867 -0.0220 35 1 8.6184 7.5985 -0.0228 36 1 10.9020 6.6849 -0.0364 37 1 11.2651 4.2541 -0.0362 38 1 10.1075 -1.1602 -0.3287 39 1 2.2423 -1.8166 0.8960 40 1 2.2394 -1.8180 -0.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585034.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:43 Heat of formation + Delta-G solvation = 79.666756 kcal Electronic energy + Delta-G solvation = -27976.235603 eV Core-core repulsion = 23951.974914 eV Total energy + Delta-G solvation = -4024.260689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.80631 -41.68940 -40.51181 -38.84967 -38.09958 -35.78324 -34.50769 -34.28036 -32.92883 -31.02569 -30.52310 -30.37735 -28.80361 -27.38747 -25.90362 -25.36159 -23.25072 -22.65561 -22.13381 -20.91580 -19.80329 -19.30380 -18.94518 -18.20500 -17.80951 -17.29775 -16.41798 -16.35148 -16.08973 -16.06448 -16.03973 -15.53053 -15.34845 -15.19025 -14.85444 -14.73050 -14.42663 -14.22102 -13.89506 -13.75964 -13.50565 -13.24694 -13.18475 -13.00214 -12.76872 -12.54183 -12.37462 -12.28945 -12.15209 -11.90246 -11.57798 -11.31084 -11.18780 -10.99981 -10.77564 -10.29154 -10.05081 -9.34885 -8.78139 -8.35944 -6.06688 -0.48539 -0.07984 0.51204 0.69338 0.81296 0.84228 1.29828 1.42977 1.47655 1.52364 2.16952 2.61291 2.61859 2.93412 2.95112 3.18942 3.28290 3.44189 3.47589 3.56560 3.70175 3.90167 4.09410 4.21674 4.25581 4.28834 4.39281 4.54201 4.55934 4.67327 4.72226 4.90204 4.91829 4.94891 5.05120 5.11674 5.19494 5.21790 5.34945 5.48019 5.64853 5.70402 5.76276 6.01809 6.23680 6.39515 6.63592 7.00550 7.86808 7.93213 8.80660 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.003718 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.278858 B = 7528.178244 C = 9994.496396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.141 3.859 3 N -0.267 5.267 4 N -0.419 5.419 5 C 0.269 3.731 6 C -0.113 4.113 7 C -0.086 4.086 8 C 0.085 3.915 9 C -0.161 4.161 10 C -0.038 4.038 11 C -0.197 4.197 12 C -0.051 4.051 13 C -0.259 4.259 14 C 0.130 3.870 15 O -0.176 6.176 16 C -0.426 4.426 17 H 0.102 0.898 18 C -0.021 4.021 19 N -0.891 5.891 20 Si 1.015 2.985 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.255 1.255 24 N -0.220 5.220 25 N -0.294 5.294 26 C 0.462 3.538 27 O -0.509 6.509 28 C -0.157 4.157 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.195 0.805 33 H 0.207 0.793 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.118 0.882 38 H 0.265 0.735 39 H 0.172 0.828 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.630 8.175 0.278 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 N -0.075 5.075 4 N -0.231 5.231 5 C 0.032 3.968 6 C -0.143 4.143 7 C -0.114 4.114 8 C -0.060 4.060 9 C -0.164 4.164 10 C -0.057 4.057 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.278 4.278 14 C 0.075 3.925 15 O -0.078 6.078 16 C -0.502 4.502 17 H 0.120 0.880 18 C -0.221 4.221 19 N -0.525 5.525 20 Si 0.834 3.166 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.180 1.180 24 N -0.062 5.062 25 N -0.140 5.140 26 C 0.251 3.749 27 O -0.378 6.378 28 C -0.198 4.198 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.212 0.788 33 H 0.224 0.776 34 H 0.185 0.815 35 H 0.182 0.818 36 H 0.167 0.833 37 H 0.136 0.864 38 H 0.074 0.926 39 H 0.189 0.811 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.980 7.047 0.287 22.134 hybrid contribution 0.809 -0.694 -0.064 1.068 sum -20.171 6.353 0.223 21.149 Atomic orbital electron populations 1.20766 0.79481 1.06210 1.06805 1.26502 0.99312 0.88934 0.90270 1.74802 0.85065 1.27984 1.19617 1.47079 1.03296 1.05210 1.67529 1.20324 0.88198 0.89729 0.98541 1.22153 1.03193 0.89244 0.99742 1.22718 0.89207 1.03842 0.95635 1.21932 0.95196 0.92170 0.96692 1.17887 0.87502 0.93518 1.17511 1.21247 1.01366 0.88580 0.94541 1.21145 0.91162 1.00877 1.08363 1.21363 0.98998 0.92942 0.93624 1.21277 0.98141 0.95077 1.13351 1.20172 0.94545 0.85060 0.92700 1.84247 1.29322 1.16913 1.77323 1.21893 0.82257 0.93025 1.53048 0.88047 1.26651 1.04603 0.94816 0.96002 1.70407 1.33908 1.02261 1.45971 0.84721 0.74563 0.77342 0.79929 1.17916 1.20183 1.17957 1.73947 1.20711 1.02468 1.09034 1.73406 0.96271 1.30658 1.13616 1.22936 0.93699 0.82730 0.75522 1.90909 1.33876 1.66257 1.46802 1.22304 0.87042 0.99546 1.10951 0.89017 0.86140 0.86115 0.78799 0.77632 0.81539 0.81847 0.83301 0.86400 0.92606 0.81105 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.08 10.50 71.24 0.75 0.67 16 2 C 0.14 1.88 7.59 46.83 0.36 2.23 16 3 N -0.27 -6.22 11.22 -40.84 -0.46 -6.68 16 4 N -0.42 -14.88 3.71 -306.66 -1.14 -16.02 16 5 C 0.27 11.50 7.59 132.97 1.01 12.51 16 6 C -0.11 -3.64 9.73 22.61 0.22 -3.42 16 7 C -0.09 -2.76 9.54 22.71 0.22 -2.54 16 8 C 0.09 3.95 6.81 42.07 0.29 4.24 16 9 C -0.16 -7.16 5.89 -19.94 -0.12 -7.28 16 10 C -0.04 -1.19 9.43 22.48 0.21 -0.98 16 11 C -0.20 -5.51 10.03 22.26 0.22 -5.28 16 12 C -0.05 -1.68 10.03 22.29 0.22 -1.45 16 13 C -0.26 -11.63 9.16 22.36 0.20 -11.42 16 14 C 0.13 6.93 6.65 22.83 0.15 7.08 16 15 O -0.18 -11.44 7.62 -21.47 -0.16 -11.60 16 16 C -0.43 -26.76 9.49 67.92 0.64 -26.12 16 17 H 0.10 5.77 5.21 -2.91 -0.02 5.75 16 18 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 19 N -0.89 -61.39 13.67 21.61 0.30 -61.09 16 20 Si 1.02 47.04 29.55 68.60 2.03 49.07 16 21 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 24 N -0.22 -12.84 9.34 -48.37 -0.45 -13.29 16 25 N -0.29 -16.42 10.08 -54.78 -0.55 -16.97 16 26 C 0.46 16.83 8.36 87.94 0.74 17.57 16 27 O -0.51 -25.44 16.79 -3.07 -0.05 -25.49 16 28 C -0.16 -2.62 6.93 29.65 0.21 -2.41 16 29 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H 0.19 4.37 7.67 -2.91 -0.02 4.35 16 33 H 0.21 3.99 6.29 -2.91 -0.02 3.97 16 34 H 0.17 3.38 6.24 -2.91 -0.02 3.36 16 35 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 36 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 38 H 0.27 17.14 8.31 -92.71 -0.77 16.37 16 39 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -109.56 352.72 6.41 -103.15 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.12 Total: 16.36 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 5.78 Total: -17.43 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -2.30 Total: -114.06 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.22 Total: -37.09 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -109.56 6.41 -103.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585034.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.815 kcal (2) G-P(sol) polarization free energy of solvation -109.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds