Wall clock time and date at job start Tue Mar 31 2020 20:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30941 * 122.90474 * 2 1 4 4 C 1.29428 * 117.35997 * 180.02562 * 3 2 1 5 5 S 1.70946 * 110.39363 * 359.73152 * 4 3 2 6 6 C 1.35662 * 122.90261 * 180.02562 * 2 1 3 7 7 C 1.46685 * 126.13217 * 359.96499 * 6 2 1 8 8 O 1.21691 * 119.99851 * 359.97438 * 7 6 2 9 9 N 1.34774 * 120.00102 * 179.97438 * 7 6 2 10 10 C 1.46504 * 119.99770 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.85304 * 336.19460 * 10 9 7 12 12 C 1.53777 * 113.68879 * 107.46877 * 10 9 7 13 13 C 1.53784 * 87.08116 * 139.98991 * 12 10 9 14 14 H 1.08998 * 113.69248 * 89.12799 * 13 12 10 15 15 N 1.46905 * 113.61317 * 220.01476 * 13 12 10 16 16 C 1.46892 * 110.99935 * 252.49796 * 15 13 12 17 17 C 1.50706 * 109.47092 * 179.97438 * 16 15 13 18 18 O 1.21292 * 119.99873 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00146 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99970 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99992 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00025 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99490 * 0.27571 * 22 20 19 24 24 Si 1.86800 * 119.99850 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47035 * 60.00382 * 24 22 20 26 26 H 1.48503 * 109.46845 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47237 * 300.00138 * 24 22 20 28 28 C 1.53777 * 87.08220 * 334.56241 * 13 12 10 29 29 H 1.08997 * 109.46861 * 269.95559 * 1 2 3 30 30 H 1.08993 * 109.47034 * 29.95591 * 1 2 3 31 31 H 1.08993 * 109.47107 * 149.95845 * 1 2 3 32 32 H 1.08006 * 124.80126 * 180.02562 * 4 3 2 33 33 H 0.96996 * 120.00187 * 359.97438 * 9 7 6 34 34 H 1.08994 * 113.62117 * 25.44124 * 12 10 9 35 35 H 1.09006 * 113.60993 * 254.53863 * 12 10 9 36 36 H 1.00896 * 110.99866 * 128.53884 * 15 13 12 37 37 H 1.09001 * 109.47511 * 60.00413 * 16 15 13 38 38 H 1.09000 * 109.47198 * 299.99775 * 16 15 13 39 39 H 0.96999 * 120.00043 * 359.97438 * 19 17 16 40 40 H 0.96991 * 120.00673 * 359.71788 * 23 22 20 41 41 H 1.09000 * 113.61436 * 139.97849 * 28 13 12 42 42 H 1.09000 * 113.61730 * 270.80711 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 -0.0005 5 16 3.9447 -0.6781 0.0064 6 6 2.2440 -1.1390 -0.0005 7 6 1.7191 -2.5088 -0.0004 8 8 0.5173 -2.6998 0.0007 9 7 2.5679 -3.5556 -0.0015 10 6 2.0436 -4.9237 -0.0008 11 1 1.0346 -4.9901 0.4059 12 6 2.2156 -5.6518 -1.3443 13 6 2.5693 -6.9069 -0.5291 14 1 1.7048 -7.5166 -0.2663 15 7 3.6676 -7.6934 -1.1064 16 6 3.1670 -8.9408 -1.6990 17 6 4.3194 -9.7187 -2.2804 18 8 5.4468 -9.2771 -2.2085 19 7 4.0972 -10.9046 -2.8810 20 6 5.1457 -11.6124 -3.4094 21 1 6.1496 -11.2196 -3.3446 22 6 4.9167 -12.8353 -4.0282 23 7 3.6944 -13.3107 -4.1117 24 14 6.3452 -13.7995 -4.7487 25 1 7.3194 -14.1181 -3.6742 26 1 5.8392 -15.0608 -5.3473 27 1 7.0126 -12.9864 -5.7969 28 6 3.0165 -5.9559 0.5935 29 1 -0.3633 -0.0008 1.0276 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8895 -0.5144 32 1 4.2058 1.7975 -0.0002 33 1 3.5259 -3.4034 -0.0027 34 1 3.0433 -5.2729 -1.9436 35 1 1.2894 -5.7462 -1.9114 36 1 4.3796 -7.8810 -0.4165 37 1 2.4522 -8.7070 -2.4881 38 1 2.6768 -9.5374 -0.9297 39 1 3.1956 -11.2575 -2.9389 40 1 2.9526 -12.8099 -3.7379 41 1 2.7371 -6.2956 1.5908 42 1 4.0636 -5.6610 0.5247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265529253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:29 Heat of formation + Delta-G solvation = -1.535396 kcal Electronic energy + Delta-G solvation = -25291.755077 eV Core-core repulsion = 21399.417151 eV Total energy + Delta-G solvation = -3892.337927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85957 -39.99317 -38.72735 -38.07584 -34.86742 -34.18595 -32.81242 -32.22063 -31.05975 -28.83793 -26.81053 -25.89681 -25.50935 -24.33677 -23.34912 -21.55291 -20.47811 -19.76948 -19.31459 -18.87980 -17.92415 -17.18483 -16.86716 -16.35053 -15.87517 -15.64033 -15.29489 -15.23457 -14.76424 -14.53074 -14.30594 -14.03062 -13.85365 -13.67498 -13.42839 -12.92847 -12.88459 -12.74190 -12.61805 -12.23228 -11.89570 -11.79543 -11.33968 -11.24729 -11.09812 -10.94936 -10.73941 -10.52151 -10.21500 -10.11554 -10.05495 -9.87945 -9.56123 -9.43970 -9.25761 -8.53450 -8.18732 -8.04559 -6.76581 -3.89863 -0.23719 0.70017 1.06998 1.99126 2.70501 2.75268 3.30041 3.34043 3.54437 3.66924 3.82831 4.10272 4.24207 4.32708 4.37070 4.42323 4.55294 4.67065 4.72099 4.78396 5.03843 5.22946 5.30263 5.31317 5.35905 5.46747 5.48172 5.56945 5.65264 5.71778 5.82057 5.89181 5.91474 5.97929 6.04731 6.28264 6.99747 7.12420 7.15822 7.53826 7.74413 7.79337 8.06680 8.58715 8.78314 9.46202 9.86070 10.66818 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.001687 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.770573 B =16593.289202 C =17136.223630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.147 3.853 3 N -0.476 5.476 4 C 0.039 3.961 5 S 0.164 5.836 6 C -0.299 4.299 7 C 0.599 3.401 8 O -0.522 6.522 9 N -0.710 5.710 10 C 0.123 3.877 11 H 0.119 0.881 12 C -0.137 4.137 13 C 0.062 3.938 14 H 0.077 0.923 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.575 5.575 20 C -0.383 4.383 21 H 0.099 0.901 22 C -0.010 4.010 23 N -0.900 5.900 24 Si 1.092 2.908 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.284 1.284 28 C -0.149 4.149 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.207 0.793 33 H 0.400 0.600 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.376 0.624 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 25.554 11.327 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.009 3.991 3 N -0.190 5.190 4 C -0.256 4.256 5 S 0.419 5.581 6 C -0.423 4.423 7 C 0.385 3.615 8 O -0.400 6.400 9 N -0.360 5.360 10 C 0.018 3.982 11 H 0.136 0.864 12 C -0.177 4.177 13 C -0.049 4.049 14 H 0.095 0.905 15 N -0.286 5.286 16 C -0.083 4.083 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.213 5.213 20 C -0.512 4.512 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.540 5.540 24 Si 0.918 3.082 25 H -0.210 1.210 26 H -0.204 1.204 27 H -0.210 1.210 28 C -0.187 4.187 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.224 0.776 33 H 0.234 0.766 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.172 0.828 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.209 0.791 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.114 24.638 9.973 26.762 hybrid contribution -1.377 0.966 1.545 2.284 sum -4.490 25.604 11.518 28.432 Atomic orbital electron populations 1.20688 0.85801 1.04680 1.03818 1.20792 0.98882 0.84914 0.94527 1.66150 1.04907 1.31265 1.16665 1.28767 0.95306 1.00435 1.01101 1.84026 1.05218 1.03546 1.65284 1.25527 0.96363 0.99156 1.21286 1.16679 0.86215 0.82418 0.76233 1.90795 1.14208 1.84914 1.50108 1.45873 1.09444 1.05846 1.74843 1.22470 0.99061 0.78373 0.98309 0.86359 1.23591 1.02517 0.95128 0.96428 1.22797 0.94441 0.93409 0.94234 0.90543 1.60191 1.11287 1.19463 1.37689 1.21743 0.96980 0.90503 0.99116 1.19742 0.89911 0.82921 0.84594 1.90522 1.23833 1.69497 1.62309 1.41941 1.09731 1.18140 1.51521 1.20533 0.90359 1.03638 1.36678 0.88333 1.26524 1.02753 0.95329 0.96611 1.70897 0.99037 1.40208 1.43816 0.83127 0.72915 0.75799 0.76398 1.21035 1.20405 1.20982 1.23638 1.00431 0.95918 0.98740 0.89988 0.90635 0.88042 0.77617 0.76560 0.88679 0.91087 0.82833 0.89605 0.93814 0.79132 0.92756 0.90552 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 9.69 36.01 0.35 -0.46 16 2 C 0.15 1.45 6.79 -83.89 -0.57 0.88 16 3 N -0.48 -4.39 10.50 -11.53 -0.12 -4.51 16 4 C 0.04 0.24 12.22 51.75 0.63 0.88 16 5 S 0.16 1.01 22.35 -107.50 -2.40 -1.39 16 6 C -0.30 -2.82 6.48 -37.09 -0.24 -3.06 16 7 C 0.60 6.44 7.78 -12.85 -0.10 6.34 16 8 O -0.52 -6.91 13.87 5.20 0.07 -6.84 16 9 N -0.71 -6.40 5.35 -54.32 -0.29 -6.69 16 10 C 0.12 1.16 4.24 -67.11 -0.28 0.87 16 11 H 0.12 1.18 7.46 -51.93 -0.39 0.80 16 12 C -0.14 -1.50 7.68 -25.92 -0.20 -1.70 16 13 C 0.06 0.70 4.14 -66.90 -0.28 0.42 16 14 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 15 N -0.65 -9.91 6.18 -107.13 -0.66 -10.57 16 16 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 17 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 18 O -0.58 -15.63 15.78 5.55 0.09 -15.54 16 19 N -0.58 -14.42 5.28 -10.96 -0.06 -14.48 16 20 C -0.38 -10.75 9.68 -14.93 -0.14 -10.90 16 21 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 22 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 23 N -0.90 -25.20 13.68 55.50 0.76 -24.44 16 24 Si 1.09 24.19 29.92 -169.99 -5.09 19.11 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 C -0.15 -1.32 7.40 -25.92 -0.19 -1.51 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.10 1.02 6.01 -51.93 -0.31 0.71 16 32 H 0.21 0.49 8.06 -52.48 -0.42 0.06 16 33 H 0.40 2.92 7.91 -40.82 -0.32 2.59 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.35 5.45 8.25 -39.29 -0.32 5.12 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.04 0.67 8.13 -51.93 -0.42 0.24 16 39 H 0.38 8.69 6.73 -40.82 -0.27 8.42 16 40 H 0.26 7.02 6.77 -40.82 -0.28 6.74 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -35.02 371.01 -8.63 -43.65 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.28 Total: 13.64 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.24 Total: 2.48 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.37 Total: -60.69 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.16 Total: -22.38 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.09 Total: 19.11 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.40 Total: -1.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.02 -8.63 -43.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265529253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.116 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds