Wall clock time and date at job start Tue Mar 31 2020 20:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30941 * 122.90474 * 2 1 4 4 C 1.29428 * 117.35997 * 180.02562 * 3 2 1 5 5 S 1.70946 * 110.39363 * 359.73152 * 4 3 2 6 6 C 1.35662 * 122.90261 * 180.02562 * 2 1 3 7 7 C 1.46685 * 126.13217 * 359.96499 * 6 2 1 8 8 O 1.21691 * 119.99851 * 359.97438 * 7 6 2 9 9 N 1.34774 * 120.00102 * 179.97438 * 7 6 2 10 10 C 1.46504 * 119.99770 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.85304 * 336.19460 * 10 9 7 12 12 C 1.53777 * 113.68879 * 107.46877 * 10 9 7 13 13 C 1.53784 * 87.08116 * 139.98991 * 12 10 9 14 14 H 1.08998 * 113.69248 * 89.12799 * 13 12 10 15 15 N 1.46905 * 113.61317 * 220.01476 * 13 12 10 16 16 C 1.46892 * 110.99935 * 252.49796 * 15 13 12 17 17 C 1.50706 * 109.47092 * 179.97438 * 16 15 13 18 18 O 1.21292 * 119.99873 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00146 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99970 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99992 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00025 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99490 * 0.27571 * 22 20 19 24 24 Si 1.86800 * 119.99850 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47035 * 60.00382 * 24 22 20 26 26 H 1.48503 * 109.46845 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47237 * 300.00138 * 24 22 20 28 28 C 1.53777 * 87.08220 * 334.56241 * 13 12 10 29 29 H 1.08997 * 109.46861 * 269.95559 * 1 2 3 30 30 H 1.08993 * 109.47034 * 29.95591 * 1 2 3 31 31 H 1.08993 * 109.47107 * 149.95845 * 1 2 3 32 32 H 1.08006 * 124.80126 * 180.02562 * 4 3 2 33 33 H 0.96996 * 120.00187 * 359.97438 * 9 7 6 34 34 H 1.08994 * 113.62117 * 25.44124 * 12 10 9 35 35 H 1.09006 * 113.60993 * 254.53863 * 12 10 9 36 36 H 1.00896 * 110.99866 * 128.53884 * 15 13 12 37 37 H 1.09001 * 109.47511 * 60.00413 * 16 15 13 38 38 H 1.09000 * 109.47198 * 299.99775 * 16 15 13 39 39 H 0.96999 * 120.00043 * 359.97438 * 19 17 16 40 40 H 0.96991 * 120.00673 * 359.71788 * 23 22 20 41 41 H 1.09000 * 113.61436 * 139.97849 * 28 13 12 42 42 H 1.09000 * 113.61730 * 270.80711 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5066 0.9743 -0.0005 5 16 3.9447 -0.6781 0.0064 6 6 2.2440 -1.1390 -0.0005 7 6 1.7191 -2.5088 -0.0004 8 8 0.5173 -2.6998 0.0007 9 7 2.5679 -3.5556 -0.0015 10 6 2.0436 -4.9237 -0.0008 11 1 1.0346 -4.9901 0.4059 12 6 2.2156 -5.6518 -1.3443 13 6 2.5693 -6.9069 -0.5291 14 1 1.7048 -7.5166 -0.2663 15 7 3.6676 -7.6934 -1.1064 16 6 3.1670 -8.9408 -1.6990 17 6 4.3194 -9.7187 -2.2804 18 8 5.4468 -9.2771 -2.2085 19 7 4.0972 -10.9046 -2.8810 20 6 5.1457 -11.6124 -3.4094 21 1 6.1496 -11.2196 -3.3446 22 6 4.9167 -12.8353 -4.0282 23 7 3.6944 -13.3107 -4.1117 24 14 6.3452 -13.7995 -4.7487 25 1 7.3194 -14.1181 -3.6742 26 1 5.8392 -15.0608 -5.3473 27 1 7.0126 -12.9864 -5.7969 28 6 3.0165 -5.9559 0.5935 29 1 -0.3633 -0.0008 1.0276 30 1 -0.3633 0.8903 -0.5131 31 1 -0.3633 -0.8895 -0.5144 32 1 4.2058 1.7975 -0.0002 33 1 3.5259 -3.4034 -0.0027 34 1 3.0433 -5.2729 -1.9436 35 1 1.2894 -5.7462 -1.9114 36 1 4.3796 -7.8810 -0.4165 37 1 2.4522 -8.7070 -2.4881 38 1 2.6768 -9.5374 -0.9297 39 1 3.1956 -11.2575 -2.9389 40 1 2.9526 -12.8099 -3.7379 41 1 2.7371 -6.2956 1.5908 42 1 4.0636 -5.6610 0.5247 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265529253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:28 Heat of formation + Delta-G solvation = -29.389571 kcal Electronic energy + Delta-G solvation = -25292.962925 eV Core-core repulsion = 21399.417151 eV Total energy + Delta-G solvation = -3893.545775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.58373 -40.78533 -40.23370 -39.26347 -36.50484 -35.60944 -33.88261 -33.08910 -32.86674 -29.57575 -28.27460 -26.73424 -26.17263 -25.93350 -24.42530 -22.38419 -21.57349 -21.22048 -20.16886 -19.96810 -19.48302 -18.20234 -17.86196 -17.48851 -16.89336 -16.69431 -16.54544 -16.24291 -16.09190 -15.55543 -15.40204 -15.25841 -15.07556 -14.61175 -14.55107 -14.43234 -13.56551 -13.49706 -13.43378 -13.37343 -13.31826 -13.17804 -12.77345 -12.40933 -12.27320 -12.02821 -11.91594 -11.88672 -11.60216 -11.51829 -11.25931 -10.77920 -10.68303 -10.40431 -10.16297 -10.11228 -9.87513 -9.39058 -8.92584 -6.06703 -0.83144 0.15632 0.51502 1.33789 1.52848 1.54997 1.83087 1.95497 2.00442 2.01034 2.41393 2.85057 3.16008 3.16872 3.39281 3.47637 3.58009 3.69978 3.88449 3.96691 4.01204 4.12668 4.16039 4.34526 4.46418 4.52837 4.66022 4.69889 4.75937 4.79539 4.83379 4.94044 5.01597 5.07666 5.27131 5.45451 5.60424 5.94761 6.03128 6.30402 6.36178 6.54060 6.57988 6.74398 6.98459 7.44369 7.92143 8.55061 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.001687 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.770573 B =16593.289202 C =17136.223630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.135 3.865 3 N -0.505 5.505 4 C 0.048 3.952 5 S 0.215 5.785 6 C -0.330 4.330 7 C 0.597 3.403 8 O -0.555 6.555 9 N -0.702 5.702 10 C 0.130 3.870 11 H 0.115 0.885 12 C -0.139 4.139 13 C 0.059 3.941 14 H 0.090 0.910 15 N -0.667 5.667 16 C 0.064 3.936 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.587 5.587 20 C -0.411 4.411 21 H 0.074 0.926 22 C -0.043 4.043 23 N -0.917 5.917 24 Si 1.134 2.866 25 H -0.272 1.272 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.133 4.133 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.245 0.755 33 H 0.409 0.591 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.348 0.652 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.384 0.616 40 H 0.259 0.741 41 H 0.094 0.906 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 26.461 12.088 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.003 4.003 3 N -0.220 5.220 4 C -0.247 4.247 5 S 0.471 5.529 6 C -0.454 4.454 7 C 0.383 3.617 8 O -0.435 6.435 9 N -0.352 5.352 10 C 0.025 3.975 11 H 0.133 0.867 12 C -0.179 4.179 13 C -0.051 4.051 14 H 0.108 0.892 15 N -0.300 5.300 16 C -0.068 4.068 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.226 5.226 20 C -0.540 4.540 21 H 0.092 0.908 22 C -0.241 4.241 23 N -0.556 5.556 24 Si 0.954 3.046 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.199 1.199 28 C -0.172 4.172 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.261 0.739 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.219 0.781 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.381 25.563 10.750 27.834 hybrid contribution -1.558 0.812 1.333 2.206 sum -3.939 26.376 12.084 29.278 Atomic orbital electron populations 1.20623 0.86060 1.04194 1.03864 1.20942 0.99286 0.85482 0.94637 1.66194 1.06185 1.31165 1.18444 1.29480 0.94988 1.01771 0.98426 1.83813 1.02149 1.02853 1.64076 1.25489 0.98721 0.98352 1.22881 1.16904 0.85933 0.83203 0.75642 1.90772 1.15558 1.85536 1.51680 1.45791 1.09809 1.05414 1.74207 1.22334 0.99232 0.78647 0.97328 0.86680 1.23568 1.01831 0.95472 0.96981 1.22917 0.93838 0.93152 0.95176 0.89185 1.60172 1.12706 1.18616 1.38468 1.21608 0.94252 0.90907 1.00078 1.20898 0.91121 0.82243 0.82817 1.90492 1.26189 1.70271 1.63334 1.42010 1.09555 1.18870 1.52208 1.20528 0.90333 1.04753 1.38367 0.90809 1.27840 1.04321 0.95820 0.96160 1.70968 0.99478 1.40571 1.44600 0.82628 0.70705 0.74899 0.76413 1.19688 1.19805 1.19884 1.23554 1.00442 0.94391 0.98773 0.89702 0.89898 0.89610 0.73887 0.75498 0.89893 0.91485 0.83160 0.88170 0.91169 0.78148 0.92997 0.88776 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.69 71.24 0.69 -0.93 16 2 C 0.14 2.62 6.79 42.10 0.29 2.91 16 3 N -0.51 -8.68 10.50 -190.40 -2.00 -10.68 16 4 C 0.05 0.47 12.22 130.60 1.60 2.07 16 5 S 0.22 2.18 22.35 -56.49 -1.26 0.92 16 6 C -0.33 -5.99 6.48 23.88 0.15 -5.84 16 7 C 0.60 12.66 7.78 86.45 0.67 13.33 16 8 O -0.55 -14.98 13.87 -4.32 -0.06 -15.04 16 9 N -0.70 -11.92 5.35 -443.99 -2.38 -14.29 16 10 C 0.13 2.28 4.24 45.52 0.19 2.47 16 11 H 0.12 2.18 7.46 -2.39 -0.02 2.16 16 12 C -0.14 -2.89 7.68 31.12 0.24 -2.65 16 13 C 0.06 1.22 4.14 45.44 0.19 1.41 16 14 H 0.09 1.66 7.87 -2.39 -0.02 1.64 16 15 N -0.67 -19.23 6.18 -492.85 -3.05 -22.28 16 16 C 0.06 2.09 6.01 85.56 0.51 2.60 16 17 C 0.44 20.59 7.82 87.66 0.69 21.28 16 18 O -0.62 -33.73 15.78 -3.07 -0.05 -33.78 16 19 N -0.59 -29.64 5.28 -306.98 -1.62 -31.26 16 20 C -0.41 -23.39 9.68 84.04 0.81 -22.57 16 21 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 22 C -0.04 -2.34 5.50 84.93 0.47 -1.88 16 23 N -0.92 -51.11 13.68 21.66 0.30 -50.81 16 24 Si 1.13 48.27 29.92 68.60 2.05 50.33 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 C -0.13 -2.06 7.40 31.12 0.23 -1.83 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.84 6.01 -2.39 -0.01 1.82 16 32 H 0.25 0.24 8.06 -2.91 -0.02 0.22 16 33 H 0.41 5.32 7.91 -92.71 -0.73 4.59 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.35 10.36 8.25 -89.70 -0.74 9.62 16 37 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 39 H 0.38 17.81 6.73 -92.71 -0.62 17.18 16 40 H 0.26 13.96 6.77 -92.72 -0.63 13.33 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 1.51 8.12 -2.39 -0.02 1.49 16 Total: -1.00 -76.90 371.01 -2.19 -79.09 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.86 Total: 37.45 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.73 Total: 10.35 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -8.75 Total: -129.32 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.11 Total: -48.82 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.05 Total: 50.33 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.26 Total: 0.92 kcal Total: -76.90 -2.19 -79.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265529253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.704 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds