Wall clock time and date at job start Tue Mar 31 2020 20:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29415 * 125.69417 * 2 1 4 4 N 1.26404 * 116.47717 * 179.97438 * 3 2 1 5 5 C 1.29417 * 116.46934 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.68991 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47045 * 90.02907 * 6 5 4 8 8 C 1.42899 * 114.00207 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47077 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99935 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99769 * 180.02562 * 9 8 7 12 12 C 1.47868 * 126.94312 * 0.02562 * 11 9 8 13 13 C 1.56022 * 105.10268 * 181.98149 * 12 11 9 14 14 H 1.08998 * 116.24897 * 158.84081 * 13 12 11 15 15 C 1.57086 * 99.60620 * 32.80752 * 13 12 11 16 16 C 1.49284 * 126.94470 * 179.71034 * 11 9 8 17 17 H 1.09007 * 116.15228 * 16.72114 * 16 11 9 18 18 C 1.56015 * 104.09416 * 246.71776 * 16 11 9 19 19 N 1.47360 * 105.15155 * 288.60605 * 18 16 11 20 20 C 1.36930 * 126.79195 * 182.05782 * 19 18 16 21 21 H 1.08008 * 119.99976 * 180.28178 * 20 19 18 22 22 C 1.38811 * 120.00010 * 0.28850 * 20 19 18 23 23 N 1.31616 * 120.00371 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99797 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47259 * 59.99974 * 24 22 20 26 26 H 1.48506 * 109.47076 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47334 * 299.99486 * 24 22 20 28 28 S 1.71218 * 125.69662 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47034 * 90.02124 * 1 2 3 30 30 H 1.08992 * 109.46798 * 210.01843 * 1 2 3 31 31 H 1.08993 * 109.46994 * 330.02310 * 1 2 3 32 32 H 1.09001 * 109.47038 * 210.02577 * 6 5 4 33 33 H 1.08992 * 109.47386 * 330.02299 * 6 5 4 34 34 H 1.08994 * 109.46996 * 300.00346 * 8 7 6 35 35 H 1.09002 * 109.46850 * 59.99626 * 8 7 6 36 36 H 1.08991 * 110.32066 * 300.88630 * 12 11 9 37 37 H 1.09005 * 110.31696 * 62.97555 * 12 11 9 38 38 H 1.08997 * 112.36724 * 64.27786 * 15 13 12 39 39 H 1.09004 * 112.36482 * 191.62578 * 15 13 12 40 40 H 1.09002 * 110.31344 * 47.67617 * 18 16 11 41 41 H 1.09001 * 110.31593 * 169.85734 * 18 16 11 42 42 H 0.96998 * 120.00465 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8486 0.0005 5 6 3.8936 -0.3874 0.0004 6 6 5.3233 -0.8640 0.0004 7 8 5.7749 -1.0154 1.3477 8 6 7.1261 -1.4665 1.4606 9 6 7.4947 -1.5895 2.9167 10 8 6.6806 -1.3171 3.7733 11 7 8.7293 -2.0012 3.2668 12 6 9.8350 -2.3692 2.3565 13 6 11.0015 -2.8134 3.2925 14 1 11.7654 -3.4478 2.8430 15 6 10.1699 -3.4425 4.4674 16 6 9.2591 -2.1716 4.6521 17 1 8.5162 -2.2157 5.4486 18 6 10.3613 -1.0742 4.7750 19 7 11.4674 -1.5419 3.9211 20 6 12.6779 -0.9286 3.7380 21 1 13.4120 -1.3684 3.0789 22 6 12.9617 0.2584 4.3994 23 7 12.0671 0.7946 5.2022 24 14 14.6133 1.0947 4.1501 25 1 14.7847 1.4341 2.7145 26 1 14.6666 2.3372 4.9617 27 1 15.7015 0.1782 4.5753 28 16 2.5061 -1.3905 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3632 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5134 32 1 5.3866 -1.8230 -0.5138 33 1 5.9495 -0.1345 -0.5129 34 1 7.2264 -2.4380 0.9767 35 1 7.7901 -0.7497 0.9774 36 1 9.5342 -3.1932 1.7096 37 1 10.1346 -1.5089 1.7579 38 1 9.6045 -4.3194 4.1522 39 1 10.7819 -3.6461 5.3461 40 1 9.9832 -0.1164 4.4173 41 1 10.6955 -0.9876 5.8088 42 1 12.2652 1.6242 5.6641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267710385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:53 Heat of formation + Delta-G solvation = 54.715855 kcal Electronic energy + Delta-G solvation = -26390.463807 eV Core-core repulsion = 22500.565117 eV Total energy + Delta-G solvation = -3889.898690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57231 -40.14824 -38.58528 -37.20458 -33.72050 -33.68132 -31.73139 -30.78454 -29.33401 -28.65403 -27.74065 -26.48265 -25.23734 -24.55436 -23.43047 -20.78359 -20.26729 -19.89049 -19.65080 -18.53802 -17.48729 -17.06176 -16.39818 -16.36938 -16.00620 -15.63149 -15.45442 -14.96761 -14.44836 -14.17553 -13.89539 -13.67397 -13.52084 -13.34902 -13.23292 -12.93131 -12.34123 -12.26687 -12.11967 -11.88636 -11.69577 -11.34843 -11.05887 -10.87837 -10.82176 -10.76553 -10.62725 -10.54317 -10.31037 -10.13032 -10.10359 -10.00540 -9.93038 -9.67727 -9.43398 -8.72792 -8.06653 -6.96899 -5.79242 -3.14830 0.03236 0.55859 1.02695 2.17734 2.87168 2.97021 3.35876 3.40038 3.42760 3.53775 3.94273 4.25860 4.39189 4.44587 4.64443 4.76474 4.92771 4.96120 5.00586 5.08848 5.10993 5.13089 5.17517 5.22044 5.34793 5.42845 5.52088 5.58677 5.72596 5.84192 6.10049 6.21581 6.35725 6.40348 6.54440 6.58742 6.75907 7.39654 7.46506 7.69564 8.00166 8.08181 8.25850 8.53101 9.07722 9.68212 10.36411 11.32345 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.002228 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.016767 B =12565.962709 C =13167.570832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.020 4.020 3 N -0.261 5.261 4 N -0.236 5.236 5 C -0.017 4.017 6 C 0.142 3.858 7 O -0.355 6.355 8 C 0.051 3.949 9 C 0.529 3.471 10 O -0.534 6.534 11 N -0.606 5.606 12 C 0.079 3.921 13 C 0.142 3.858 14 H 0.108 0.892 15 C -0.152 4.152 16 C 0.101 3.899 17 H 0.114 0.886 18 C 0.174 3.826 19 N -0.596 5.596 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 S 0.192 5.808 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.746 -10.603 -13.154 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.298 4.298 3 N -0.100 5.100 4 N -0.076 5.076 5 C -0.296 4.296 6 C 0.061 3.939 7 O -0.272 6.272 8 C -0.029 4.029 9 C 0.316 3.684 10 O -0.411 6.411 11 N -0.342 5.342 12 C -0.046 4.046 13 C 0.033 3.967 14 H 0.125 0.875 15 C -0.192 4.192 16 C -0.001 4.001 17 H 0.132 0.868 18 C 0.049 3.951 19 N -0.320 5.320 20 C -0.363 4.363 21 H 0.098 0.902 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.744 3.256 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.211 1.211 28 S 0.436 5.564 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.182 -9.776 -12.464 24.115 hybrid contribution 1.094 0.713 -0.394 1.364 sum -17.088 -9.063 -12.858 23.227 Atomic orbital electron populations 1.20407 0.83744 1.04952 1.04380 1.29348 1.04514 0.92044 1.03871 1.71501 0.96790 1.26753 1.15000 1.71441 1.06499 1.17049 1.12580 1.28695 1.02205 0.92707 1.05994 1.20661 0.86541 1.00760 0.85893 1.88062 1.27638 1.88074 1.23462 1.22254 0.83953 1.00554 0.96114 1.19557 0.81138 0.77899 0.89782 1.90706 1.48998 1.49604 1.51764 1.49146 1.10463 1.65123 1.09471 1.23375 0.88441 0.99298 0.93496 1.23150 0.92347 0.89418 0.91799 0.87471 1.24231 0.98452 0.95767 1.00708 1.24454 0.94726 0.97561 0.83348 0.86795 1.21840 0.84516 0.92715 0.96012 1.45110 1.14003 1.21694 1.51223 1.18988 0.90347 1.03575 1.23406 0.90166 1.24842 0.98285 0.97887 0.99190 1.69903 1.33642 1.20783 1.32122 0.86185 0.83101 0.78850 0.77474 1.21147 1.21608 1.21082 1.83634 0.97308 1.11352 1.64151 0.88998 0.89532 0.88637 0.90286 0.89242 0.90174 0.89724 0.92738 0.90963 0.91589 0.89687 0.93462 0.92468 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.48 36.01 0.38 -0.02 16 2 C -0.02 -0.20 7.53 -13.30 -0.10 -0.30 16 3 N -0.26 -3.61 11.66 32.58 0.38 -3.23 16 4 N -0.24 -3.55 11.66 32.58 0.38 -3.17 16 5 C -0.02 -0.21 7.16 -13.29 -0.10 -0.31 16 6 C 0.14 1.52 6.54 36.01 0.24 1.76 16 7 O -0.35 -5.32 9.86 -55.14 -0.54 -5.86 16 8 C 0.05 0.69 5.70 36.01 0.21 0.90 16 9 C 0.53 9.75 7.97 -10.98 -0.09 9.66 16 10 O -0.53 -12.06 16.85 -14.35 -0.24 -12.30 16 11 N -0.61 -10.88 2.95 -156.56 -0.46 -11.34 16 12 C 0.08 1.25 6.00 -1.67 -0.01 1.24 16 13 C 0.14 2.49 5.53 -62.55 -0.35 2.14 16 14 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 15 C -0.15 -2.47 6.84 -22.10 -0.15 -2.62 16 16 C 0.10 1.94 5.25 -62.35 -0.33 1.61 16 17 H 0.11 2.15 8.06 -51.92 -0.42 1.73 16 18 C 0.17 4.15 4.74 -1.96 -0.01 4.14 16 19 N -0.60 -13.96 3.01 -156.74 -0.47 -14.44 16 20 C -0.24 -6.13 10.37 -15.06 -0.16 -6.28 16 21 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 22 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 23 N -0.92 -26.65 10.53 55.49 0.58 -26.07 16 24 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 S 0.19 1.71 23.04 -107.50 -2.48 -0.77 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 41 H 0.06 1.50 7.43 -51.93 -0.39 1.12 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -36.24 367.03 -8.73 -44.97 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.82 Total: -1.51 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -0.56 Total: 11.69 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.41 Total: -58.24 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.79 Total: -18.16 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.48 Total: -0.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.24 -8.73 -44.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267710385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.685 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds