Wall clock time and date at job start Tue Mar 31 2020 20:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29415 * 125.69417 * 2 1 4 4 N 1.26404 * 116.47717 * 179.97438 * 3 2 1 5 5 C 1.29417 * 116.46934 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.68991 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47045 * 90.02907 * 6 5 4 8 8 C 1.42899 * 114.00207 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47077 * 179.97438 * 8 7 6 10 10 O 1.21276 * 119.99935 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99769 * 180.02562 * 9 8 7 12 12 C 1.47868 * 126.94312 * 0.02562 * 11 9 8 13 13 C 1.56022 * 105.10268 * 181.98149 * 12 11 9 14 14 H 1.08998 * 116.24897 * 158.84081 * 13 12 11 15 15 C 1.57086 * 99.60620 * 32.80752 * 13 12 11 16 16 C 1.49284 * 126.94470 * 179.71034 * 11 9 8 17 17 H 1.09007 * 116.15228 * 16.72114 * 16 11 9 18 18 C 1.56015 * 104.09416 * 246.71776 * 16 11 9 19 19 N 1.47360 * 105.15155 * 288.60605 * 18 16 11 20 20 C 1.36930 * 126.79195 * 182.05782 * 19 18 16 21 21 H 1.08008 * 119.99976 * 180.28178 * 20 19 18 22 22 C 1.38811 * 120.00010 * 0.28850 * 20 19 18 23 23 N 1.31616 * 120.00371 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99797 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47259 * 59.99974 * 24 22 20 26 26 H 1.48506 * 109.47076 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47334 * 299.99486 * 24 22 20 28 28 S 1.71218 * 125.69662 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47034 * 90.02124 * 1 2 3 30 30 H 1.08992 * 109.46798 * 210.01843 * 1 2 3 31 31 H 1.08993 * 109.46994 * 330.02310 * 1 2 3 32 32 H 1.09001 * 109.47038 * 210.02577 * 6 5 4 33 33 H 1.08992 * 109.47386 * 330.02299 * 6 5 4 34 34 H 1.08994 * 109.46996 * 300.00346 * 8 7 6 35 35 H 1.09002 * 109.46850 * 59.99626 * 8 7 6 36 36 H 1.08991 * 110.32066 * 300.88630 * 12 11 9 37 37 H 1.09005 * 110.31696 * 62.97555 * 12 11 9 38 38 H 1.08997 * 112.36724 * 64.27786 * 15 13 12 39 39 H 1.09004 * 112.36482 * 191.62578 * 15 13 12 40 40 H 1.09002 * 110.31344 * 47.67617 * 18 16 11 41 41 H 1.09001 * 110.31593 * 169.85734 * 18 16 11 42 42 H 0.96998 * 120.00465 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8486 0.0005 5 6 3.8936 -0.3874 0.0004 6 6 5.3233 -0.8640 0.0004 7 8 5.7749 -1.0154 1.3477 8 6 7.1261 -1.4665 1.4606 9 6 7.4947 -1.5895 2.9167 10 8 6.6806 -1.3171 3.7733 11 7 8.7293 -2.0012 3.2668 12 6 9.8350 -2.3692 2.3565 13 6 11.0015 -2.8134 3.2925 14 1 11.7654 -3.4478 2.8430 15 6 10.1699 -3.4425 4.4674 16 6 9.2591 -2.1716 4.6521 17 1 8.5162 -2.2157 5.4486 18 6 10.3613 -1.0742 4.7750 19 7 11.4674 -1.5419 3.9211 20 6 12.6779 -0.9286 3.7380 21 1 13.4120 -1.3684 3.0789 22 6 12.9617 0.2584 4.3994 23 7 12.0671 0.7946 5.2022 24 14 14.6133 1.0947 4.1501 25 1 14.7847 1.4341 2.7145 26 1 14.6666 2.3372 4.9617 27 1 15.7015 0.1782 4.5753 28 16 2.5061 -1.3905 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3632 -0.8898 0.5141 31 1 -0.3633 0.8901 0.5134 32 1 5.3866 -1.8230 -0.5138 33 1 5.9495 -0.1345 -0.5129 34 1 7.2264 -2.4380 0.9767 35 1 7.7901 -0.7497 0.9774 36 1 9.5342 -3.1932 1.7096 37 1 10.1346 -1.5089 1.7579 38 1 9.6045 -4.3194 4.1522 39 1 10.7819 -3.6461 5.3461 40 1 9.9832 -0.1164 4.4173 41 1 10.6955 -0.9876 5.8088 42 1 12.2652 1.6242 5.6641 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267710385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:52 Heat of formation + Delta-G solvation = 28.503934 kcal Electronic energy + Delta-G solvation = -26391.600441 eV Core-core repulsion = 22500.565117 eV Total energy + Delta-G solvation = -3891.035324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42572 -41.61111 -39.83380 -38.48221 -35.48611 -34.44990 -33.41537 -31.62644 -30.86869 -30.26100 -28.80034 -27.36542 -26.97692 -25.33684 -25.04987 -22.30162 -21.43085 -21.07106 -20.45336 -20.07432 -18.93301 -18.29802 -17.78269 -17.45874 -17.20630 -16.82913 -16.58194 -16.16155 -16.00058 -15.61156 -15.14027 -14.80097 -14.61990 -14.33373 -13.96926 -13.80509 -13.61540 -13.51133 -13.37360 -13.24333 -13.09201 -12.94792 -12.83436 -12.66375 -12.31722 -12.14330 -12.08381 -11.87724 -11.57707 -11.52889 -11.35941 -11.03027 -10.87652 -10.84414 -10.67776 -10.65912 -9.56141 -8.90980 -7.83929 -5.20175 -0.73269 -0.15411 0.24678 1.28278 1.46911 1.49727 1.54914 1.56129 1.75886 2.49087 2.63537 3.10150 3.33787 3.37698 3.50894 3.62314 3.76315 3.82039 3.90867 4.02842 4.06966 4.13791 4.20920 4.22988 4.30231 4.39294 4.60356 4.62508 4.70135 4.70371 4.82554 4.95343 5.04299 5.04755 5.16714 5.26561 5.46385 5.50410 5.65778 5.83026 6.10922 6.62569 7.03472 7.13328 7.43218 7.72426 8.41946 9.26706 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.002228 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.016767 B =12565.962709 C =13167.570832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.023 4.023 3 N -0.308 5.308 4 N -0.284 5.284 5 C -0.047 4.047 6 C 0.138 3.862 7 O -0.392 6.392 8 C 0.061 3.939 9 C 0.518 3.482 10 O -0.589 6.589 11 N -0.608 5.608 12 C 0.086 3.914 13 C 0.135 3.865 14 H 0.141 0.859 15 C -0.128 4.128 16 C 0.100 3.900 17 H 0.109 0.891 18 C 0.188 3.812 19 N -0.616 5.616 20 C -0.228 4.228 21 H 0.099 0.901 22 C -0.075 4.075 23 N -0.960 5.960 24 Si 0.978 3.022 25 H -0.275 1.275 26 H -0.307 1.307 27 H -0.272 1.272 28 S 0.262 5.738 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.078 0.922 40 H -0.008 1.008 41 H 0.015 0.985 42 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.139 -14.445 -16.128 28.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.301 4.301 3 N -0.147 5.147 4 N -0.123 5.123 5 C -0.326 4.326 6 C 0.059 3.941 7 O -0.311 6.311 8 C -0.018 4.018 9 C 0.308 3.692 10 O -0.469 6.469 11 N -0.342 5.342 12 C -0.038 4.038 13 C 0.029 3.971 14 H 0.159 0.841 15 C -0.167 4.167 16 C -0.003 4.003 17 H 0.127 0.873 18 C 0.061 3.939 19 N -0.341 5.341 20 C -0.357 4.357 21 H 0.117 0.883 22 C -0.267 4.267 23 N -0.609 5.609 24 Si 0.806 3.194 25 H -0.201 1.201 26 H -0.234 1.234 27 H -0.198 1.198 28 S 0.506 5.494 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.011 0.989 41 H 0.034 0.966 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.556 -13.687 -15.506 27.786 hybrid contribution 1.116 1.815 0.512 2.191 sum -17.440 -11.872 -14.994 25.882 Atomic orbital electron populations 1.20687 0.80780 1.06108 1.06141 1.30091 1.06395 0.92063 1.01540 1.71448 0.96971 1.28805 1.17497 1.71385 1.07546 1.19154 1.14244 1.29065 1.04222 0.93091 1.06205 1.20986 0.85762 1.03124 0.84252 1.87999 1.28179 1.88636 1.26271 1.22270 0.83774 1.03479 0.92310 1.20559 0.80506 0.76422 0.91762 1.90675 1.50648 1.51785 1.53816 1.49233 1.11057 1.64819 1.09084 1.23361 0.86869 1.00672 0.92885 1.23632 0.93688 0.87269 0.92496 0.84138 1.24129 0.97270 0.95316 0.99965 1.24235 0.93841 0.97505 0.84746 0.87340 1.21396 0.86391 0.92390 0.93681 1.45379 1.13156 1.23858 1.51681 1.19525 0.91402 1.02992 1.21750 0.88305 1.25703 1.01589 0.99417 1.00041 1.70169 1.35675 1.20890 1.34161 0.85156 0.79631 0.77218 0.77347 1.20131 1.23363 1.19798 1.83248 0.94584 1.09054 1.62476 0.86740 0.87005 0.88795 0.85829 0.88868 0.85094 0.88620 0.86721 0.92427 0.87412 0.90297 0.98943 0.96636 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.48 71.24 0.75 0.09 16 2 C -0.02 -0.43 7.53 88.46 0.67 0.24 16 3 N -0.31 -8.66 11.66 -50.85 -0.59 -9.25 16 4 N -0.28 -8.70 11.66 -50.84 -0.59 -9.30 16 5 C -0.05 -1.11 7.16 88.47 0.63 -0.47 16 6 C 0.14 2.68 6.54 71.24 0.47 3.14 16 7 O -0.39 -11.19 9.86 -129.94 -1.28 -12.47 16 8 C 0.06 1.47 5.70 71.24 0.41 1.88 16 9 C 0.52 18.60 7.97 87.66 0.70 19.30 16 10 O -0.59 -27.20 16.85 16.02 0.27 -26.93 16 11 N -0.61 -20.83 2.95 -767.64 -2.26 -23.09 16 12 C 0.09 2.37 6.00 87.16 0.52 2.89 16 13 C 0.14 4.28 5.53 46.93 0.26 4.54 16 14 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 15 C -0.13 -3.76 6.84 33.60 0.23 -3.53 16 16 C 0.10 3.83 5.25 47.06 0.25 4.08 16 17 H 0.11 4.24 8.06 -2.38 -0.02 4.22 16 18 C 0.19 9.39 4.74 87.26 0.41 9.81 16 19 N -0.62 -28.78 3.01 -649.81 -1.95 -30.73 16 20 C -0.23 -11.82 10.37 84.03 0.87 -10.95 16 21 H 0.10 4.65 7.83 -2.91 -0.02 4.63 16 22 C -0.08 -4.21 5.49 84.86 0.47 -3.75 16 23 N -0.96 -59.10 10.53 21.65 0.23 -58.87 16 24 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 S 0.26 4.09 23.04 -56.49 -1.30 2.79 16 29 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H -0.01 -0.46 7.68 -2.39 -0.02 -0.48 16 41 H 0.02 0.88 7.43 -2.39 -0.02 0.87 16 42 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -88.53 367.03 2.21 -86.32 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.04 Total: 7.08 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.63 Total: 27.27 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -5.17 Total: -131.24 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.01 Total: -39.40 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.30 Total: 2.79 kcal Total: -88.53 2.21 -86.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267710385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.827 kcal (2) G-P(sol) polarization free energy of solvation -88.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds