Wall clock time and date at job start Tue Mar 31 2020 20:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35006 * 127.27552 * 2 1 4 4 C 1.39488 * 111.68325 * 180.16716 * 3 2 1 5 5 C 1.47686 * 122.10058 * 179.78763 * 4 3 2 6 6 O 1.21573 * 120.00356 * 359.73570 * 5 4 3 7 7 N 1.34779 * 120.00293 * 179.74598 * 5 4 3 8 8 C 1.46498 * 120.00374 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.90276 * 37.40785 * 8 7 5 10 10 C 1.55136 * 110.99021 * 273.53909 * 8 7 5 11 11 C 1.54316 * 103.02142 * 206.25421 * 10 8 7 12 12 N 1.47445 * 107.22955 * 22.28484 * 11 10 8 13 13 C 1.46902 * 110.99993 * 123.25758 * 12 11 10 14 14 C 1.50702 * 109.47027 * 69.87046 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31414 * 120.00152 * 0.27554 * 19 17 16 21 21 Si 1.86803 * 119.99914 * 180.27723 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99961 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00007 * 21 19 17 25 25 C 1.47847 * 108.56981 * 0.98987 * 12 11 10 26 26 N 1.30605 * 115.79420 * 359.51806 * 4 3 2 27 27 S 1.56151 * 109.79804 * 0.26661 * 26 4 3 28 28 H 1.08999 * 109.47041 * 180.34165 * 1 2 3 29 29 H 1.08992 * 109.47353 * 300.33900 * 1 2 3 30 30 H 1.08995 * 109.47002 * 60.34337 * 1 2 3 31 31 H 1.07994 * 124.15725 * 359.97438 * 3 2 1 32 32 H 0.97008 * 119.99177 * 359.97438 * 7 5 4 33 33 H 1.09003 * 110.70332 * 87.87161 * 10 8 7 34 34 H 1.09000 * 110.70729 * 324.63900 * 10 8 7 35 35 H 1.08996 * 109.89058 * 262.88273 * 11 10 8 36 36 H 1.08994 * 109.88860 * 141.68888 * 11 10 8 37 37 H 1.09004 * 109.47131 * 309.87290 * 13 12 11 38 38 H 1.08994 * 109.47471 * 189.87039 * 13 12 11 39 39 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 40 40 H 0.96991 * 119.99827 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.37141 * 94.73522 * 25 12 11 42 42 H 1.09002 * 110.37215 * 217.07516 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0743 0.0000 4 6 3.6682 0.6994 -0.0038 5 6 4.7604 1.6934 -0.0092 6 8 4.5013 2.8812 -0.0153 7 7 6.0445 1.2839 -0.0075 8 6 7.1279 2.2700 -0.0135 9 1 6.8714 3.1333 0.6005 10 6 7.4780 2.7022 -1.4617 11 6 8.9546 3.1359 -1.3478 12 7 9.5141 2.4720 -0.1561 13 6 10.6915 1.6663 -0.5063 14 6 11.8326 2.5787 -0.8758 15 8 11.6802 3.7817 -0.8495 16 7 13.0225 2.0578 -1.2356 17 6 14.0607 2.8878 -1.5712 18 1 13.9253 3.9590 -1.5470 19 6 15.2892 2.3509 -1.9365 20 7 15.4542 1.0475 -1.9655 21 14 16.7062 3.4820 -2.3863 22 1 16.2654 4.8957 -2.2758 23 1 17.8428 3.2436 -1.4610 24 1 17.1366 3.2058 -3.7805 25 6 8.4604 1.6331 0.4538 26 7 3.8996 -0.5860 0.0033 27 16 2.5473 -1.3668 0.0076 28 1 -0.3633 -1.0276 0.0061 29 1 -0.3633 0.5190 0.8868 30 1 -0.3633 0.5085 -0.8930 31 1 1.9808 2.0980 -0.0004 32 1 6.2512 0.3361 -0.0024 33 1 6.8538 3.5387 -1.7758 34 1 7.3748 1.8633 -2.1499 35 1 9.0154 4.2180 -1.2322 36 1 9.5022 2.8244 -2.2372 37 1 10.4524 1.0224 -1.3527 38 1 10.9788 1.0526 0.3473 39 1 13.1445 1.0957 -1.2563 40 1 16.3116 0.6728 -2.2208 41 1 8.5371 0.6068 0.0945 42 1 8.5342 1.6619 1.5409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269122519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:17 Heat of formation + Delta-G solvation = -19.868918 kcal Electronic energy + Delta-G solvation = -25681.648192 eV Core-core repulsion = 21788.515264 eV Total energy + Delta-G solvation = -3893.132928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.83729 -39.44966 -38.44125 -37.40274 -34.67674 -33.87077 -33.59621 -31.33787 -30.81479 -28.77315 -28.62944 -26.85881 -25.53341 -24.11449 -21.77915 -21.14752 -20.82164 -20.34973 -19.06541 -18.70589 -17.84804 -17.66058 -16.52343 -15.98702 -15.88312 -15.54757 -15.14072 -14.62097 -14.49151 -14.41544 -13.99078 -13.88299 -13.55470 -13.53091 -13.29663 -13.27509 -13.10436 -13.06189 -12.28959 -11.89247 -11.67684 -11.65674 -11.48488 -11.42023 -11.38565 -11.20446 -11.01678 -10.59756 -10.32338 -10.27318 -10.19736 -9.95515 -9.48593 -9.37761 -9.14739 -8.43890 -7.94555 -7.89982 -6.39202 -3.79687 0.12376 0.93764 1.35237 1.35883 2.78015 2.93477 3.18267 3.28634 3.36197 3.93613 4.01447 4.15133 4.28297 4.46307 4.51954 4.69201 4.71043 4.74793 4.95430 5.05686 5.16959 5.17967 5.27562 5.31560 5.34464 5.42646 5.43003 5.61398 5.75483 5.80145 5.87688 5.93112 5.98241 6.09860 6.26332 6.32120 6.49324 7.17706 7.21508 7.26630 7.58044 7.87610 8.09352 8.65014 9.21334 9.57602 10.09772 10.78798 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.001757 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.071056 B =15933.629566 C =16449.380414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.248 4.248 3 C -0.142 4.142 4 C 0.056 3.944 5 C 0.593 3.407 6 O -0.524 6.524 7 N -0.702 5.702 8 C 0.136 3.864 9 H 0.108 0.892 10 C -0.154 4.154 11 C 0.058 3.942 12 N -0.501 5.501 13 C 0.041 3.959 14 C 0.445 3.555 15 O -0.575 6.575 16 N -0.567 5.567 17 C -0.297 4.297 18 H 0.104 0.896 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.038 3.962 26 N -0.524 5.524 27 S 0.469 5.531 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.408 0.592 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.391 0.609 40 H 0.270 0.730 41 H 0.050 0.950 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.917 -9.369 3.850 31.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.378 4.378 3 C -0.174 4.174 4 C -0.118 4.118 5 C 0.373 3.627 6 O -0.399 6.399 7 N -0.353 5.353 8 C 0.031 3.969 9 H 0.126 0.874 10 C -0.194 4.194 11 C -0.069 4.069 12 N -0.225 5.225 13 C -0.091 4.091 14 C 0.230 3.770 15 O -0.458 6.458 16 N -0.204 5.204 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.090 4.090 26 N -0.359 5.359 27 S 0.624 5.376 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.189 0.811 32 H 0.244 0.756 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -29.064 -9.409 4.182 30.834 hybrid contribution 0.454 0.582 -0.882 1.150 sum -28.610 -8.827 3.300 30.122 Atomic orbital electron populations 1.20222 0.85942 1.03434 1.03724 1.26141 1.03468 1.00094 1.08144 1.21254 0.90281 1.02101 1.03778 1.21071 0.94950 0.89207 1.06610 1.17219 0.81847 0.86822 0.76768 1.90827 1.83415 1.15983 1.49709 1.45768 1.04862 1.10917 1.73751 1.22201 0.85300 0.91937 0.97496 0.87435 1.23256 0.97923 1.01941 0.96261 1.22708 0.91215 1.01135 0.91886 1.63251 1.04208 1.27725 1.27341 1.22100 0.91582 0.95001 1.00414 1.19720 0.83961 0.89116 0.84246 1.90528 1.82862 1.15004 1.57399 1.41864 1.09554 1.09501 1.59494 1.19753 0.89066 0.92124 1.41688 0.87865 1.25254 0.98868 0.96263 0.97646 1.69620 1.25751 1.10329 1.48788 0.85804 0.80461 0.80200 0.77907 1.19222 1.20778 1.20831 1.23254 0.89309 0.95530 1.00940 1.72237 1.29311 1.10654 1.23655 1.80532 0.87472 1.12238 1.57378 0.90764 0.89986 0.89986 0.81084 0.75605 0.90131 0.91426 0.89478 0.92300 0.93233 0.89321 0.77559 0.91993 0.93157 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.46 36.01 0.38 0.15 16 2 C -0.25 -1.54 6.58 -35.46 -0.23 -1.77 16 3 C -0.14 -1.23 9.93 -40.26 -0.40 -1.63 16 4 C 0.06 0.59 6.66 -84.06 -0.56 0.03 16 5 C 0.59 7.38 7.81 -12.40 -0.10 7.28 16 6 O -0.52 -7.97 16.40 5.30 0.09 -7.88 16 7 N -0.70 -7.87 5.23 -52.73 -0.28 -8.14 16 8 C 0.14 1.70 3.31 -65.80 -0.22 1.48 16 9 H 0.11 1.49 7.73 -51.93 -0.40 1.08 16 10 C -0.15 -2.05 6.64 -24.91 -0.17 -2.21 16 11 C 0.06 0.96 5.65 -2.84 -0.02 0.94 16 12 N -0.50 -8.44 4.85 -232.69 -1.13 -9.57 16 13 C 0.04 0.73 5.03 -4.97 -0.03 0.71 16 14 C 0.44 10.61 7.43 -10.98 -0.08 10.53 16 15 O -0.57 -15.74 15.12 5.55 0.08 -15.66 16 16 N -0.57 -14.50 5.29 -10.96 -0.06 -14.55 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 20 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 21 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.04 0.49 6.31 -2.30 -0.01 0.47 16 26 N -0.52 -4.94 10.71 24.85 0.27 -4.67 16 27 S 0.47 2.89 23.20 -107.50 -2.49 0.40 16 28 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 1.41 7.99 -52.49 -0.42 0.99 16 32 H 0.41 3.99 7.98 -40.82 -0.33 3.66 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.06 1.03 7.31 -51.93 -0.38 0.65 16 37 H 0.05 0.81 7.96 -51.93 -0.41 0.39 16 38 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 39 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 41 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -33.87 370.76 -9.46 -43.33 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.55 Total: 11.01 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -1.67 Total: 7.95 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.47 Total: -60.97 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.17 Total: -23.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.49 Total: 0.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.87 -9.46 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269122519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.457 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds