Wall clock time and date at job start Tue Mar 31 2020 20:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35006 * 127.27552 * 2 1 4 4 C 1.39488 * 111.68325 * 180.16716 * 3 2 1 5 5 C 1.47686 * 122.10058 * 179.78763 * 4 3 2 6 6 O 1.21573 * 120.00356 * 359.73570 * 5 4 3 7 7 N 1.34779 * 120.00293 * 179.74598 * 5 4 3 8 8 C 1.46498 * 120.00374 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.90276 * 37.40785 * 8 7 5 10 10 C 1.55136 * 110.99021 * 273.53909 * 8 7 5 11 11 C 1.54316 * 103.02142 * 206.25421 * 10 8 7 12 12 N 1.47445 * 107.22955 * 22.28484 * 11 10 8 13 13 C 1.46902 * 110.99993 * 123.25758 * 12 11 10 14 14 C 1.50702 * 109.47027 * 69.87046 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31414 * 120.00152 * 0.27554 * 19 17 16 21 21 Si 1.86803 * 119.99914 * 180.27723 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99961 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00007 * 21 19 17 25 25 C 1.47847 * 108.56981 * 0.98987 * 12 11 10 26 26 N 1.30605 * 115.79420 * 359.51806 * 4 3 2 27 27 S 1.56151 * 109.79804 * 0.26661 * 26 4 3 28 28 H 1.08999 * 109.47041 * 180.34165 * 1 2 3 29 29 H 1.08992 * 109.47353 * 300.33900 * 1 2 3 30 30 H 1.08995 * 109.47002 * 60.34337 * 1 2 3 31 31 H 1.07994 * 124.15725 * 359.97438 * 3 2 1 32 32 H 0.97008 * 119.99177 * 359.97438 * 7 5 4 33 33 H 1.09003 * 110.70332 * 87.87161 * 10 8 7 34 34 H 1.09000 * 110.70729 * 324.63900 * 10 8 7 35 35 H 1.08996 * 109.89058 * 262.88273 * 11 10 8 36 36 H 1.08994 * 109.88860 * 141.68888 * 11 10 8 37 37 H 1.09004 * 109.47131 * 309.87290 * 13 12 11 38 38 H 1.08994 * 109.47471 * 189.87039 * 13 12 11 39 39 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 40 40 H 0.96991 * 119.99827 * 179.97438 * 20 19 17 41 41 H 1.09002 * 110.37141 * 94.73522 * 25 12 11 42 42 H 1.09002 * 110.37215 * 217.07516 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0743 0.0000 4 6 3.6682 0.6994 -0.0038 5 6 4.7604 1.6934 -0.0092 6 8 4.5013 2.8812 -0.0153 7 7 6.0445 1.2839 -0.0075 8 6 7.1279 2.2700 -0.0135 9 1 6.8714 3.1333 0.6005 10 6 7.4780 2.7022 -1.4617 11 6 8.9546 3.1359 -1.3478 12 7 9.5141 2.4720 -0.1561 13 6 10.6915 1.6663 -0.5063 14 6 11.8326 2.5787 -0.8758 15 8 11.6802 3.7817 -0.8495 16 7 13.0225 2.0578 -1.2356 17 6 14.0607 2.8878 -1.5712 18 1 13.9253 3.9590 -1.5470 19 6 15.2892 2.3509 -1.9365 20 7 15.4542 1.0475 -1.9655 21 14 16.7062 3.4820 -2.3863 22 1 16.2654 4.8957 -2.2758 23 1 17.8428 3.2436 -1.4610 24 1 17.1366 3.2058 -3.7805 25 6 8.4604 1.6331 0.4538 26 7 3.8996 -0.5860 0.0033 27 16 2.5473 -1.3668 0.0076 28 1 -0.3633 -1.0276 0.0061 29 1 -0.3633 0.5190 0.8868 30 1 -0.3633 0.5085 -0.8930 31 1 1.9808 2.0980 -0.0004 32 1 6.2512 0.3361 -0.0024 33 1 6.8538 3.5387 -1.7758 34 1 7.3748 1.8633 -2.1499 35 1 9.0154 4.2180 -1.2322 36 1 9.5022 2.8244 -2.2372 37 1 10.4524 1.0224 -1.3527 38 1 10.9788 1.0526 0.3473 39 1 13.1445 1.0957 -1.2563 40 1 16.3116 0.6728 -2.2208 41 1 8.5371 0.6068 0.0945 42 1 8.5342 1.6619 1.5409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269122519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:16 Heat of formation + Delta-G solvation = -46.449875 kcal Electronic energy + Delta-G solvation = -25682.800829 eV Core-core repulsion = 21788.515264 eV Total energy + Delta-G solvation = -3894.285565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68057 -40.68464 -39.69474 -38.81757 -36.04694 -35.54387 -34.20315 -33.29407 -32.17037 -29.84740 -29.19750 -28.29637 -26.60279 -25.75355 -22.67390 -22.34283 -21.83308 -21.14268 -20.82704 -19.85327 -19.36650 -18.44643 -17.72107 -17.58637 -16.91057 -16.62722 -16.49450 -16.21391 -15.68967 -15.57864 -15.28991 -15.02674 -14.70756 -14.52526 -14.47045 -13.99418 -13.83345 -13.75701 -13.57426 -13.49360 -13.32026 -12.98510 -12.79554 -12.57269 -12.43398 -12.38612 -12.29895 -12.11661 -11.88437 -11.82521 -11.49871 -11.17736 -10.47796 -10.35275 -10.29661 -9.99848 -9.76738 -9.28063 -8.46335 -5.94622 -0.49506 0.43143 0.65527 0.75989 1.36408 1.41524 1.55694 1.86684 2.06558 2.07291 2.29568 2.83730 3.20397 3.28373 3.46374 3.57287 3.70134 3.79893 3.97917 4.17499 4.21094 4.24640 4.28408 4.30833 4.41597 4.50934 4.60802 4.69628 4.77336 4.78629 4.87306 4.90047 4.93476 5.12674 5.16659 5.24586 5.35224 5.41730 5.82661 5.95925 6.07883 6.34766 6.61726 6.97624 7.14081 7.57427 8.13847 8.71366 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.001757 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.071056 B =15933.629566 C =16449.380414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.237 4.237 3 C -0.164 4.164 4 C 0.034 3.966 5 C 0.590 3.410 6 O -0.562 6.562 7 N -0.691 5.691 8 C 0.144 3.856 9 H 0.092 0.908 10 C -0.141 4.141 11 C 0.062 3.938 12 N -0.524 5.524 13 C 0.054 3.946 14 C 0.440 3.560 15 O -0.616 6.616 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.045 3.955 26 N -0.551 5.551 27 S 0.534 5.466 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.167 0.833 32 H 0.418 0.582 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.076 0.924 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.395 -11.846 4.036 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.368 4.368 3 C -0.196 4.196 4 C -0.138 4.138 5 C 0.372 3.628 6 O -0.439 6.439 7 N -0.343 5.343 8 C 0.039 3.961 9 H 0.110 0.890 10 C -0.181 4.181 11 C -0.066 4.066 12 N -0.249 5.249 13 C -0.077 4.077 14 C 0.228 3.772 15 O -0.502 6.502 16 N -0.213 5.213 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.083 4.083 26 N -0.387 5.387 27 S 0.689 5.311 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.184 0.816 32 H 0.255 0.745 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -30.552 -11.936 4.375 33.091 hybrid contribution 0.791 1.261 -0.919 1.749 sum -29.761 -10.675 3.456 31.806 Atomic orbital electron populations 1.20418 0.83590 1.05134 1.04502 1.26542 1.04976 0.99392 1.05882 1.21286 0.90140 1.02757 1.05414 1.20827 0.94756 0.89200 1.09062 1.17583 0.82479 0.86851 0.75843 1.90799 1.84024 1.17637 1.51477 1.45620 1.04272 1.11056 1.73310 1.21951 0.85778 0.91906 0.96508 0.88984 1.23117 0.95550 1.02188 0.97199 1.22541 0.93043 0.99697 0.91297 1.63142 1.05215 1.29023 1.27520 1.21958 0.89680 0.93826 1.02241 1.20798 0.84674 0.89457 0.82313 1.90500 1.83685 1.17318 1.58671 1.41919 1.09851 1.09448 1.60077 1.19685 0.90843 0.91511 1.44096 0.90473 1.26014 1.00590 0.97799 0.96848 1.69673 1.26664 1.11313 1.48514 0.84881 0.77431 0.77854 0.78222 1.19961 1.19567 1.19596 1.23273 0.87662 0.96057 1.01277 1.71979 1.32071 1.10386 1.24302 1.80267 0.85571 1.10530 1.54744 0.88617 0.89107 0.89177 0.81558 0.74472 0.90571 0.90118 0.92164 0.93809 0.90903 0.86770 0.76990 0.91338 0.90601 0.88250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.46 71.24 0.75 0.49 16 2 C -0.24 -2.42 6.58 24.94 0.16 -2.26 16 3 C -0.16 -2.73 9.93 21.83 0.22 -2.51 16 4 C 0.03 0.69 6.66 42.12 0.28 0.97 16 5 C 0.59 14.71 7.81 86.74 0.68 15.38 16 6 O -0.56 -17.61 16.40 -3.95 -0.06 -17.67 16 7 N -0.69 -14.90 5.23 -439.01 -2.29 -17.19 16 8 C 0.14 3.54 3.31 46.38 0.15 3.69 16 9 H 0.09 2.59 7.73 -2.39 -0.02 2.57 16 10 C -0.14 -3.73 6.64 31.77 0.21 -3.52 16 11 C 0.06 2.10 5.65 86.65 0.49 2.59 16 12 N -0.52 -17.38 4.85 -890.10 -4.32 -21.70 16 13 C 0.05 1.88 5.03 85.56 0.43 2.31 16 14 C 0.44 21.36 7.43 87.66 0.65 22.01 16 15 O -0.62 -34.99 15.12 -3.07 -0.05 -35.04 16 16 N -0.58 -29.88 5.29 -306.97 -1.62 -31.51 16 17 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 18 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 19 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 20 N -0.92 -49.98 13.05 21.67 0.28 -49.70 16 21 Si 0.99 43.58 29.55 68.60 2.03 45.60 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 C 0.04 1.07 6.31 86.77 0.55 1.61 16 26 N -0.55 -9.49 10.71 -75.30 -0.81 -10.30 16 27 S 0.53 5.20 23.20 -56.49 -1.31 3.89 16 28 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 29 H 0.09 0.20 8.14 -2.39 -0.02 0.19 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.17 2.80 7.99 -2.91 -0.02 2.77 16 32 H 0.42 7.44 7.98 -92.70 -0.74 6.70 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.04 1.57 7.31 -2.39 -0.02 1.56 16 37 H 0.07 2.22 7.96 -2.38 -0.02 2.20 16 38 H 0.11 3.41 8.07 -2.39 -0.02 3.39 16 39 H 0.40 19.42 7.90 -92.71 -0.73 18.68 16 40 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -75.49 370.76 -2.70 -78.19 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.39 Total: 33.21 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 5.85 Total: 22.21 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -8.76 Total: -130.39 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.11 Total: -52.71 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.31 Total: 3.89 kcal Total: -75.49 -2.70 -78.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269122519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.737 kcal (2) G-P(sol) polarization free energy of solvation -75.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds