Wall clock time and date at job start Tue Mar 31 2020 20:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29513 * 121.52793 * 2 1 4 4 S 1.69480 * 107.84318 * 179.72700 * 3 2 1 5 5 C 1.72012 * 96.02850 * 359.97438 * 4 3 2 6 6 C 1.37902 * 105.36195 * 0.02562 * 5 4 3 7 7 C 1.47341 * 123.08539 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00215 * 175.83054 * 7 6 5 9 9 N 1.34778 * 119.99951 * 355.82757 * 7 6 5 10 10 C 1.46500 * 120.00254 * 184.93065 * 9 7 6 11 11 C 1.52997 * 109.47361 * 184.99424 * 10 9 7 12 12 N 1.46903 * 115.54927 * 276.41806 * 11 10 9 13 13 C 1.46896 * 111.00215 * 294.57175 * 12 11 10 14 14 C 1.50697 * 109.47375 * 185.43366 * 13 12 11 15 15 O 1.21298 * 119.99872 * 4.97421 * 14 13 12 16 16 N 1.34776 * 120.00453 * 184.97255 * 14 13 12 17 17 C 1.37092 * 120.00196 * 184.87892 * 16 14 13 18 18 H 1.07996 * 119.99880 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99982 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47229 * 60.00025 * 21 19 17 23 23 H 1.48504 * 109.47202 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47024 * 299.99687 * 21 19 17 25 25 C 1.53005 * 117.50008 * 130.74962 * 11 10 9 26 26 C 1.53003 * 117.50078 * 62.09046 * 11 10 9 27 27 H 1.09001 * 109.46862 * 90.02692 * 1 2 3 28 28 H 1.09004 * 109.46799 * 210.02513 * 1 2 3 29 29 H 1.08994 * 109.47361 * 330.02737 * 1 2 3 30 30 H 1.08001 * 127.31870 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99994 * 4.94442 * 9 7 6 32 32 H 1.08998 * 109.47089 * 304.99900 * 10 9 7 33 33 H 1.09002 * 109.47019 * 64.99511 * 10 9 7 34 34 H 1.00903 * 110.99389 * 170.61816 * 12 11 10 35 35 H 1.08994 * 109.47131 * 305.43941 * 13 12 11 36 36 H 1.09002 * 109.46497 * 65.43672 * 13 12 11 37 37 H 0.97002 * 119.99455 * 4.87112 * 16 14 13 38 38 H 0.96998 * 120.00236 * 180.02562 * 20 19 17 39 39 H 1.08999 * 117.49265 * 0.02562 * 25 11 10 40 40 H 1.08994 * 117.49763 * 145.02101 * 25 11 10 41 41 H 1.09000 * 117.49767 * 214.98424 * 26 11 10 42 42 H 1.09003 * 117.49577 * 359.97433 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8309 0.7030 0.0077 5 6 3.6018 -1.0018 0.0118 6 6 2.2352 -1.1867 0.0063 7 6 1.6037 -2.5179 0.0081 8 8 0.3937 -2.6168 0.0796 9 7 2.3670 -3.6260 -0.0697 10 6 1.7363 -4.9439 -0.1769 11 6 2.8124 -6.0301 -0.1240 12 7 3.4786 -6.3247 -1.3997 13 6 2.5345 -6.9022 -2.3656 14 6 3.2779 -7.3134 -3.6104 15 8 4.4870 -7.2260 -3.6514 16 7 2.5993 -7.7782 -4.6780 17 6 3.2799 -8.2458 -5.7724 18 1 4.3599 -8.2413 -5.7791 19 6 2.5803 -8.7245 -6.8733 20 7 1.2661 -8.7295 -6.8653 21 14 3.5076 -9.3610 -8.3647 22 1 4.3681 -10.5024 -7.9625 23 1 2.5380 -9.8118 -9.3952 24 1 4.3538 -8.2753 -8.9218 25 6 2.5939 -7.1946 0.8442 26 6 3.6518 -6.1316 1.1512 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.3658 -1.7651 0.0166 31 1 3.3340 -3.5509 -0.0544 32 1 1.0398 -5.0818 0.6502 33 1 1.1967 -5.0127 -1.1215 34 1 4.2718 -6.9328 -1.2614 35 1 2.0525 -7.7749 -1.9253 36 1 1.7783 -6.1603 -2.6224 37 1 1.6293 -7.7819 -4.6720 38 1 0.7777 -9.0640 -7.6337 39 1 1.6832 -7.1869 1.4431 40 1 2.9448 -8.1790 0.5348 41 1 4.6982 -6.4172 1.0436 42 1 3.4375 -5.4242 1.9524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269398642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:02 Heat of formation + Delta-G solvation = -1.175701 kcal Electronic energy + Delta-G solvation = -26066.457388 eV Core-core repulsion = 22174.135059 eV Total energy + Delta-G solvation = -3892.322329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.61557 -39.23748 -38.23991 -37.70308 -34.55988 -34.05633 -32.66258 -31.95673 -31.24137 -29.75331 -27.45881 -26.58697 -24.55682 -24.12700 -22.67596 -21.39275 -20.19909 -19.55360 -19.31651 -18.46043 -17.94061 -17.22454 -16.63560 -16.01056 -15.67025 -15.44067 -15.19650 -14.74528 -14.56693 -14.35700 -14.14269 -14.10616 -13.90620 -13.57850 -13.25314 -12.82816 -12.60190 -12.56068 -12.53797 -12.22701 -11.76757 -11.69795 -11.62550 -11.52539 -11.11804 -11.00829 -10.88663 -10.47800 -10.40734 -10.25316 -10.09299 -9.90112 -9.55246 -9.28546 -8.95007 -8.50674 -8.18718 -8.01569 -6.45879 -3.87188 0.09954 1.03105 1.43369 1.57182 2.81729 3.05050 3.16793 3.23384 3.27146 3.57300 3.82483 4.02096 4.14188 4.21376 4.39652 4.55050 4.62093 4.66138 4.78983 4.98012 5.04336 5.15359 5.21171 5.39512 5.42557 5.46372 5.50548 5.52521 5.64589 5.70572 5.79476 5.89736 5.93729 5.96084 6.19791 6.25165 6.39165 7.05456 7.29596 7.49259 7.50714 7.98944 8.00247 8.55162 9.12352 9.48355 9.98416 10.71516 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.002390 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.075445 B =11711.431333 C =12582.490482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.167 3.833 3 N -0.472 5.472 4 S 0.290 5.710 5 C -0.171 4.171 6 C -0.210 4.210 7 C 0.585 3.415 8 O -0.532 6.532 9 N -0.709 5.709 10 C 0.168 3.832 11 C 0.035 3.965 12 N -0.629 5.629 13 C 0.049 3.951 14 C 0.439 3.561 15 O -0.589 6.589 16 N -0.559 5.559 17 C -0.302 4.302 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.900 5.900 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.204 4.204 26 C -0.166 4.166 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.193 0.807 31 H 0.404 0.596 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.357 0.643 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.393 0.607 38 H 0.273 0.727 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 12.581 18.394 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.011 4.011 3 N -0.292 5.292 4 S 0.446 5.554 5 C -0.320 4.320 6 C -0.232 4.232 7 C 0.370 3.630 8 O -0.411 6.411 9 N -0.360 5.360 10 C 0.044 3.956 11 C -0.058 4.058 12 N -0.261 5.261 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.474 6.474 16 N -0.196 5.196 17 C -0.432 4.432 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.540 5.540 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.244 4.244 26 C -0.204 4.204 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.210 0.790 31 H 0.239 0.761 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.178 0.822 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.493 15.190 17.953 23.564 hybrid contribution -0.436 -2.970 -0.547 3.051 sum 1.057 12.220 17.406 21.293 Atomic orbital electron populations 1.20978 0.85325 1.05265 1.04453 1.21472 0.99636 0.86637 0.93342 1.76500 1.00266 1.26196 1.26285 1.84105 1.10779 0.95559 1.64951 1.27484 0.99397 1.04911 1.00230 1.20399 0.92155 0.96139 1.14503 1.17259 0.86405 0.82908 0.76464 1.90717 1.13491 1.86507 1.50359 1.45714 1.10467 1.05650 1.74144 1.20766 0.92789 0.79051 1.02978 1.21875 0.99069 0.97900 0.87006 1.59963 1.08912 1.51377 1.05858 1.21690 0.95285 0.98508 0.92794 1.19744 0.88258 0.84341 0.85177 1.90517 1.14137 1.59420 1.83280 1.41835 1.09252 1.54572 1.13892 1.19647 0.93357 1.37421 0.92733 0.87969 1.25278 0.95620 0.97585 0.99346 1.69603 1.05821 1.46645 1.31969 0.85912 0.78763 0.79258 0.80259 1.19898 1.20916 1.19835 1.23649 1.01236 0.95087 1.04439 1.23160 0.97431 1.02284 0.97526 0.89717 0.86820 0.90851 0.79022 0.76090 0.90347 0.90280 0.82189 0.93171 0.89563 0.77353 0.91710 0.88328 0.88319 0.88131 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.58 36.01 0.34 -0.65 16 2 C 0.17 1.87 6.75 -83.20 -0.56 1.31 16 3 N -0.47 -5.38 11.97 32.50 0.39 -4.99 16 4 S 0.29 2.47 23.69 -107.50 -2.55 -0.08 16 5 C -0.17 -1.37 10.79 30.61 0.33 -1.04 16 6 C -0.21 -2.21 5.86 -105.95 -0.62 -2.83 16 7 C 0.59 6.85 7.77 -12.56 -0.10 6.75 16 8 O -0.53 -7.50 13.71 5.27 0.07 -7.42 16 9 N -0.71 -7.20 5.44 -61.41 -0.33 -7.54 16 10 C 0.17 1.83 5.74 -4.04 -0.02 1.81 16 11 C 0.03 0.37 1.81 -131.60 -0.24 0.13 16 12 N -0.63 -9.06 6.43 -101.22 -0.65 -9.71 16 13 C 0.05 0.82 5.94 -4.98 -0.03 0.79 16 14 C 0.44 10.01 7.81 -10.99 -0.09 9.93 16 15 O -0.59 -15.36 15.62 5.54 0.09 -15.28 16 16 N -0.56 -13.92 5.28 -10.97 -0.06 -13.98 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.94 7.17 -52.49 -0.38 2.56 16 19 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 20 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 21 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.20 -1.91 10.02 -26.69 -0.27 -2.18 16 26 C -0.17 -1.42 9.87 -26.69 -0.26 -1.68 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.11 1.25 5.53 -51.93 -0.29 0.96 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.19 0.96 7.21 -52.49 -0.38 0.58 16 31 H 0.40 3.44 7.03 -40.82 -0.29 3.15 16 32 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 33 H 0.08 1.00 6.60 -51.93 -0.34 0.66 16 34 H 0.36 5.44 8.02 -39.29 -0.32 5.13 16 35 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.09 1.37 6.83 -51.93 -0.35 1.02 16 37 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -32.33 372.49 -8.64 -40.97 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -5.16 Total: 15.73 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.75 Total: 4.43 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.07 Total: -59.76 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: 0.16 Total: -22.70 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.55 Total: -0.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.33 -8.64 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269398642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.795 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds