Wall clock time and date at job start Tue Mar 31 2020 20:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29513 * 121.52793 * 2 1 4 4 S 1.69480 * 107.84318 * 179.72700 * 3 2 1 5 5 C 1.72012 * 96.02850 * 359.97438 * 4 3 2 6 6 C 1.37902 * 105.36195 * 0.02562 * 5 4 3 7 7 C 1.47341 * 123.08539 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00215 * 175.83054 * 7 6 5 9 9 N 1.34778 * 119.99951 * 355.82757 * 7 6 5 10 10 C 1.46500 * 120.00254 * 184.93065 * 9 7 6 11 11 C 1.52997 * 109.47361 * 184.99424 * 10 9 7 12 12 N 1.46903 * 115.54927 * 276.41806 * 11 10 9 13 13 C 1.46896 * 111.00215 * 294.57175 * 12 11 10 14 14 C 1.50697 * 109.47375 * 185.43366 * 13 12 11 15 15 O 1.21298 * 119.99872 * 4.97421 * 14 13 12 16 16 N 1.34776 * 120.00453 * 184.97255 * 14 13 12 17 17 C 1.37092 * 120.00196 * 184.87892 * 16 14 13 18 18 H 1.07996 * 119.99880 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99982 * 180.02562 * 17 16 14 20 20 N 1.31416 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99986 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47229 * 60.00025 * 21 19 17 23 23 H 1.48504 * 109.47202 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47024 * 299.99687 * 21 19 17 25 25 C 1.53005 * 117.50008 * 130.74962 * 11 10 9 26 26 C 1.53003 * 117.50078 * 62.09046 * 11 10 9 27 27 H 1.09001 * 109.46862 * 90.02692 * 1 2 3 28 28 H 1.09004 * 109.46799 * 210.02513 * 1 2 3 29 29 H 1.08994 * 109.47361 * 330.02737 * 1 2 3 30 30 H 1.08001 * 127.31870 * 179.97438 * 5 4 3 31 31 H 0.97001 * 119.99994 * 4.94442 * 9 7 6 32 32 H 1.08998 * 109.47089 * 304.99900 * 10 9 7 33 33 H 1.09002 * 109.47019 * 64.99511 * 10 9 7 34 34 H 1.00903 * 110.99389 * 170.61816 * 12 11 10 35 35 H 1.08994 * 109.47131 * 305.43941 * 13 12 11 36 36 H 1.09002 * 109.46497 * 65.43672 * 13 12 11 37 37 H 0.97002 * 119.99455 * 4.87112 * 16 14 13 38 38 H 0.96998 * 120.00236 * 180.02562 * 20 19 17 39 39 H 1.08999 * 117.49265 * 0.02562 * 25 11 10 40 40 H 1.08994 * 117.49763 * 145.02101 * 25 11 10 41 41 H 1.09000 * 117.49767 * 214.98424 * 26 11 10 42 42 H 1.09003 * 117.49577 * 359.97433 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8309 0.7030 0.0077 5 6 3.6018 -1.0018 0.0118 6 6 2.2352 -1.1867 0.0063 7 6 1.6037 -2.5179 0.0081 8 8 0.3937 -2.6168 0.0796 9 7 2.3670 -3.6260 -0.0697 10 6 1.7363 -4.9439 -0.1769 11 6 2.8124 -6.0301 -0.1240 12 7 3.4786 -6.3247 -1.3997 13 6 2.5345 -6.9022 -2.3656 14 6 3.2779 -7.3134 -3.6104 15 8 4.4870 -7.2260 -3.6514 16 7 2.5993 -7.7782 -4.6780 17 6 3.2799 -8.2458 -5.7724 18 1 4.3599 -8.2413 -5.7791 19 6 2.5803 -8.7245 -6.8733 20 7 1.2661 -8.7295 -6.8653 21 14 3.5076 -9.3610 -8.3647 22 1 4.3681 -10.5024 -7.9625 23 1 2.5380 -9.8118 -9.3952 24 1 4.3538 -8.2753 -8.9218 25 6 2.5939 -7.1946 0.8442 26 6 3.6518 -6.1316 1.1512 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 4.3658 -1.7651 0.0166 31 1 3.3340 -3.5509 -0.0544 32 1 1.0398 -5.0818 0.6502 33 1 1.1967 -5.0127 -1.1215 34 1 4.2718 -6.9328 -1.2614 35 1 2.0525 -7.7749 -1.9253 36 1 1.7783 -6.1603 -2.6224 37 1 1.6293 -7.7819 -4.6720 38 1 0.7777 -9.0640 -7.6337 39 1 1.6832 -7.1869 1.4431 40 1 2.9448 -8.1790 0.5348 41 1 4.6982 -6.4172 1.0436 42 1 3.4375 -5.4242 1.9524 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269398642.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:01 Heat of formation + Delta-G solvation = -26.242447 kcal Electronic energy + Delta-G solvation = -26067.544364 eV Core-core repulsion = 22174.135059 eV Total energy + Delta-G solvation = -3893.409305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45487 -40.42748 -39.55924 -38.76595 -36.04423 -35.41339 -33.91669 -33.21051 -32.70976 -30.54252 -28.39808 -28.11117 -25.87520 -25.31371 -23.42407 -22.21526 -21.19470 -20.99040 -20.34262 -19.92529 -19.24821 -18.10648 -17.90105 -17.00693 -16.92251 -16.49808 -16.38176 -16.18047 -15.84450 -15.63654 -15.28963 -15.21934 -14.80167 -14.64920 -14.35177 -14.13886 -13.79050 -13.53329 -13.47411 -13.36874 -13.27169 -12.92776 -12.86724 -12.44507 -12.39523 -12.35289 -12.13646 -11.83037 -11.77001 -11.50998 -11.22964 -10.87123 -10.78326 -10.35635 -10.14115 -10.03352 -9.67748 -9.28694 -8.47566 -5.96693 -0.60869 0.34495 0.69308 0.74331 1.39054 1.41511 1.52313 1.99565 2.02290 2.20877 2.27433 2.66145 3.05501 3.19668 3.42168 3.47427 3.61121 3.75567 3.88885 3.90271 4.02844 4.27848 4.31419 4.42056 4.48766 4.52793 4.61212 4.65594 4.69332 4.72538 4.77956 4.82400 5.01119 5.15856 5.22985 5.39499 5.42391 5.61315 5.85275 6.05301 6.33288 6.51114 6.57471 7.10481 7.15554 7.53962 8.07516 8.69544 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.002390 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.075445 B =11711.431333 C =12582.490482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.155 3.845 3 N -0.506 5.506 4 S 0.327 5.673 5 C -0.151 4.151 6 C -0.235 4.235 7 C 0.585 3.415 8 O -0.563 6.563 9 N -0.700 5.700 10 C 0.171 3.829 11 C 0.022 3.978 12 N -0.636 5.636 13 C 0.066 3.934 14 C 0.439 3.561 15 O -0.623 6.623 16 N -0.572 5.572 17 C -0.334 4.334 18 H 0.081 0.919 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.272 1.272 25 C -0.199 4.199 26 C -0.144 4.144 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.413 0.587 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.352 0.648 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.803 12.576 19.417 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.022 4.022 3 N -0.327 5.327 4 S 0.482 5.518 5 C -0.300 4.300 6 C -0.256 4.256 7 C 0.370 3.630 8 O -0.444 6.444 9 N -0.351 5.351 10 C 0.048 3.952 11 C -0.071 4.071 12 N -0.268 5.268 13 C -0.066 4.066 14 C 0.227 3.773 15 O -0.510 6.510 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.099 0.901 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.816 3.184 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.239 4.239 26 C -0.181 4.181 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.241 0.759 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.172 0.828 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.439 15.185 19.002 24.446 hybrid contribution -0.642 -2.913 -0.787 3.085 sum 1.797 12.272 18.215 22.037 Atomic orbital electron populations 1.20916 0.85384 1.05165 1.04247 1.21611 1.00052 0.86993 0.93518 1.76366 1.02147 1.26877 1.27328 1.83976 1.08672 0.95359 1.63785 1.27893 0.99049 1.05634 0.97448 1.20321 0.93109 0.95328 1.16858 1.17436 0.86119 0.83534 0.75916 1.90703 1.14801 1.86971 1.51900 1.45632 1.10835 1.05108 1.73480 1.20684 0.92903 0.79392 1.02266 1.21804 1.00264 0.98893 0.86147 1.59932 1.08579 1.50840 1.07435 1.21493 0.95009 0.99520 0.90595 1.20785 0.88129 0.82283 0.86142 1.90485 1.15999 1.60317 1.84182 1.41926 1.09342 1.55395 1.14238 1.19639 0.92769 1.39438 0.94552 0.90112 1.26058 0.96483 0.97237 1.01507 1.69670 1.06763 1.46843 1.32837 0.84993 0.77771 0.78625 0.76999 1.19443 1.19619 1.19765 1.23684 1.02266 0.94454 1.03532 1.23254 0.97339 1.01632 0.95914 0.89970 0.87824 0.89947 0.75871 0.75017 0.89486 0.92337 0.82770 0.91384 0.88618 0.77043 0.91274 0.86940 0.88932 0.87709 0.86225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.58 71.24 0.68 -1.30 16 2 C 0.15 3.43 6.75 43.14 0.29 3.72 16 3 N -0.51 -11.18 11.97 -51.10 -0.61 -11.80 16 4 S 0.33 4.94 23.69 -56.49 -1.34 3.60 16 5 C -0.15 -2.06 10.79 67.74 0.73 -1.33 16 6 C -0.23 -4.68 5.86 -20.72 -0.12 -4.80 16 7 C 0.58 13.19 7.77 86.64 0.67 13.86 16 8 O -0.56 -15.89 13.71 -4.08 -0.06 -15.94 16 9 N -0.70 -13.01 5.44 -466.46 -2.54 -15.55 16 10 C 0.17 3.47 5.74 86.38 0.50 3.97 16 11 C 0.02 0.42 1.81 3.53 0.01 0.42 16 12 N -0.64 -17.50 6.43 -474.15 -3.05 -20.54 16 13 C 0.07 2.15 5.94 85.56 0.51 2.65 16 14 C 0.44 20.18 7.81 87.66 0.68 20.87 16 15 O -0.62 -32.98 15.62 -3.09 -0.05 -33.03 16 16 N -0.57 -28.98 5.28 -306.99 -1.62 -30.60 16 17 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 18 H 0.08 4.79 7.17 -2.91 -0.02 4.77 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.92 -49.61 13.05 21.66 0.28 -49.33 16 21 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C -0.20 -3.22 10.02 30.62 0.31 -2.91 16 26 C -0.14 -1.99 9.87 30.62 0.30 -1.69 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.10 2.36 5.53 -2.39 -0.01 2.35 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.22 1.41 7.21 -2.91 -0.02 1.39 16 31 H 0.41 5.97 7.03 -92.71 -0.65 5.32 16 32 H 0.09 1.64 7.87 -2.39 -0.02 1.62 16 33 H 0.06 1.44 6.60 -2.39 -0.02 1.42 16 34 H 0.35 10.35 8.02 -89.69 -0.72 9.63 16 35 H 0.07 1.99 8.07 -2.39 -0.02 1.97 16 36 H 0.10 2.98 6.83 -2.39 -0.02 2.97 16 37 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 38 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.11 1.53 8.06 -2.39 -0.02 1.51 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.83 372.49 -2.11 -72.94 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -0.99 Total: 40.41 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 5.84 Total: 15.30 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -7.54 Total: -127.82 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -0.10 Total: -48.97 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.34 Total: 3.60 kcal Total: -70.83 -2.11 -72.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269398642.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.698 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds