Wall clock time and date at job start Tue Mar 31 2020 20:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 110.78061 * 2 1 4 4 C 1.34777 * 120.00030 * 303.23840 * 3 2 1 5 5 O 1.21279 * 120.00150 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00278 * 180.02562 * 4 3 2 7 7 O 1.42898 * 109.47396 * 179.97438 * 6 4 3 8 8 C 1.35924 * 116.99915 * 180.02562 * 7 6 4 9 9 C 1.38699 * 120.06000 * 359.72319 * 8 7 6 10 10 C 1.38155 * 119.95612 * 179.70122 * 9 8 7 11 11 C 1.38275 * 120.07681 * 0.57504 * 10 9 8 12 12 C 1.38247 * 120.11937 * 359.72674 * 11 10 9 13 13 C 1.38261 * 120.03989 * 359.97431 * 12 11 10 14 14 Cl 1.73601 * 120.03623 * 180.02562 * 13 12 11 15 15 C 1.55151 * 110.71741 * 123.23736 * 2 1 3 16 16 C 1.54914 * 101.58023 * 153.86287 * 15 2 1 17 17 N 1.47420 * 104.83159 * 322.99181 * 16 15 2 18 18 C 1.36945 * 125.64792 * 204.08975 * 17 16 15 19 19 H 1.07997 * 119.99756 * 180.02562 * 18 17 16 20 20 C 1.38805 * 119.99878 * 0.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.47020 * 108.70626 * 24.35323 * 17 16 15 27 27 H 1.08995 * 109.47166 * 296.76593 * 1 2 3 28 28 H 1.09000 * 109.47069 * 56.76058 * 1 2 3 29 29 H 1.08991 * 109.47197 * 176.76236 * 1 2 3 30 30 H 0.97000 * 120.00525 * 123.23771 * 3 2 1 31 31 H 1.09004 * 109.46599 * 300.00371 * 6 4 3 32 32 H 1.08998 * 109.46874 * 60.00016 * 6 4 3 33 33 H 1.08003 * 120.02564 * 0.02562 * 9 8 7 34 34 H 1.08004 * 119.96325 * 180.30481 * 10 9 8 35 35 H 1.08003 * 119.94091 * 179.74450 * 11 10 9 36 36 H 1.07996 * 119.97952 * 179.97438 * 12 11 10 37 37 H 1.09002 * 111.00697 * 35.79181 * 15 2 1 38 38 H 1.08994 * 111.00548 * 271.93648 * 15 2 1 39 39 H 1.08999 * 110.37083 * 204.15142 * 16 15 2 40 40 H 1.08998 * 110.45606 * 81.87777 * 16 15 2 41 41 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.88406 * 118.12749 * 26 17 16 43 43 H 1.09001 * 109.88743 * 239.29401 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3697 0.0000 4 6 1.6908 2.2267 -0.9762 5 8 0.9377 1.8639 -1.8550 6 6 2.2259 3.6355 -0.9766 7 8 1.7048 4.3427 -2.1037 8 6 2.0925 5.6369 -2.2533 9 6 2.9519 6.2157 -1.3312 10 6 3.3494 7.5294 -1.4886 11 6 2.8823 8.2714 -2.5578 12 6 2.0207 7.6996 -3.4754 13 6 1.6245 6.3834 -3.3259 14 17 0.5431 5.6652 -4.4786 15 6 2.0789 -0.7954 1.2138 16 6 3.4633 -1.2498 0.6875 17 7 3.2445 -1.5508 -0.7390 18 6 4.0043 -2.3970 -1.5018 19 1 3.7611 -2.5508 -2.5427 20 6 5.0869 -3.0571 -0.9371 21 7 5.3829 -2.8701 0.3317 22 14 6.1229 -4.2120 -1.9774 23 1 5.5626 -5.5851 -1.8999 24 1 6.1111 -3.7515 -3.3892 25 1 7.5186 -4.2176 -1.4701 26 6 2.0793 -0.7870 -1.2087 27 1 -0.3633 0.4628 0.9175 28 1 -0.3633 0.5633 -0.8595 29 1 -0.3633 -1.0259 -0.0580 30 1 2.6524 1.6598 0.7026 31 1 1.9226 4.1396 -0.0589 32 1 3.3140 3.6108 -1.0350 33 1 3.3141 5.6383 -0.4934 34 1 4.0225 7.9787 -0.7734 35 1 3.1912 9.2995 -2.6765 36 1 1.6569 8.2813 -4.3094 37 1 1.4451 -1.6535 1.4375 38 1 2.1850 -0.1518 2.0870 39 1 3.7960 -2.1427 1.2169 40 1 4.1946 -0.4492 0.7985 41 1 6.1393 -3.3317 0.7264 42 1 2.3814 -0.0970 -1.9965 43 1 1.3155 -1.4687 -1.5830 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270655270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:08 Heat of formation + Delta-G solvation = -38.239549 kcal Electronic energy + Delta-G solvation = -26785.609989 eV Core-core repulsion = 22857.343993 eV Total energy + Delta-G solvation = -3928.265996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64522 -40.89234 -39.09275 -38.19131 -37.32322 -35.74496 -33.78721 -32.11217 -31.76937 -31.10543 -30.38943 -28.89396 -27.56573 -25.43943 -23.94891 -23.40595 -22.33962 -21.86633 -20.53915 -19.48119 -19.05787 -18.18123 -17.43806 -17.42487 -17.05939 -16.78791 -16.66131 -15.77699 -15.54455 -15.51367 -15.35091 -14.87115 -14.68625 -14.43043 -14.09066 -14.05345 -13.77109 -13.56790 -13.31519 -13.15390 -12.85084 -12.83854 -12.79112 -12.53860 -12.22457 -12.13247 -12.06776 -12.04971 -11.98074 -11.78220 -11.70258 -11.54440 -10.76146 -10.64810 -10.08800 -9.90175 -9.23822 -8.89859 -7.80278 -5.23597 0.14466 0.31317 1.20252 1.44544 1.45741 1.48817 1.54737 1.58209 2.46930 2.60088 2.64769 3.28805 3.48504 3.68280 3.69822 3.78245 3.93870 3.99762 4.03886 4.08441 4.17594 4.23383 4.35032 4.44875 4.62578 4.66903 4.77873 4.79309 4.84755 4.89569 5.00631 5.09189 5.10050 5.27048 5.33149 5.41665 5.44753 5.59230 5.65106 5.69274 5.80177 6.17520 6.30824 6.57291 7.10399 7.23488 7.75861 8.38859 9.20814 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.002600 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.234184 B =10767.555290 C =11136.986521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.173 3.827 3 N -0.696 5.696 4 C 0.511 3.489 5 O -0.559 6.559 6 C 0.044 3.956 7 O -0.310 6.310 8 C 0.114 3.886 9 C -0.202 4.202 10 C -0.071 4.071 11 C -0.143 4.143 12 C -0.079 4.079 13 C -0.095 4.095 14 Cl -0.079 7.079 15 C -0.125 4.125 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.067 0.933 20 C -0.058 4.058 21 N -0.942 5.942 22 Si 0.977 3.023 23 H -0.284 1.284 24 H -0.279 1.279 25 H -0.288 1.288 26 C 0.136 3.864 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.415 0.585 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.153 0.847 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.076 0.924 40 H -0.002 1.002 41 H 0.249 0.751 42 H 0.003 0.997 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 24.486 3.227 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.087 3.913 3 N -0.350 5.350 4 C 0.297 3.703 5 O -0.436 6.436 6 C -0.034 4.034 7 O -0.222 6.222 8 C 0.068 3.932 9 C -0.221 4.221 10 C -0.089 4.089 11 C -0.161 4.161 12 C -0.097 4.097 13 C -0.123 4.123 14 Cl -0.050 7.050 15 C -0.164 4.164 16 C 0.029 3.971 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.085 0.915 20 C -0.251 4.251 21 N -0.591 5.591 22 Si 0.805 3.195 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.214 1.214 26 C 0.009 3.991 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.252 0.748 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.016 0.984 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.227 23.903 2.385 24.816 hybrid contribution 0.908 -1.002 -0.673 1.510 sum -5.320 22.901 1.712 23.573 Atomic orbital electron populations 1.21993 0.92251 1.02794 1.03196 1.21150 0.94233 0.80535 0.95417 1.45682 1.49786 1.10996 1.28492 1.20516 0.80988 0.87354 0.81458 1.90706 1.36938 1.78697 1.37297 1.22660 1.00677 0.89489 0.90564 1.86202 1.67767 1.21723 1.46551 1.19069 0.95684 0.83589 0.94872 1.21610 1.01234 0.98358 1.00886 1.21518 0.97334 0.92439 0.97572 1.21468 0.98087 1.02016 0.94532 1.21232 0.96893 0.91023 1.00552 1.20597 1.02249 0.95233 0.94187 1.98373 1.63496 1.84203 1.58936 1.23210 0.97411 0.99698 0.96080 1.21788 0.92383 0.98937 0.83952 1.44786 1.31487 1.50109 1.08536 1.19340 1.07107 1.17629 0.93203 0.91548 1.25511 0.99741 1.02125 0.97748 1.69997 1.30292 1.46922 1.11891 0.85113 0.77786 0.78806 0.77808 1.21032 1.20402 1.21356 1.21686 0.89172 0.92682 0.95515 0.90031 0.92291 0.91514 0.74760 0.84946 0.86887 0.82250 0.81757 0.81829 0.82886 0.89915 0.87501 0.90599 0.98403 0.94086 0.97866 0.96341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.44 71.98 0.61 -3.71 16 2 C 0.17 5.87 0.81 4.80 0.00 5.87 16 3 N -0.70 -19.56 5.14 -417.55 -2.15 -21.71 16 4 C 0.51 15.61 7.12 87.66 0.62 16.23 16 5 O -0.56 -22.60 13.48 16.01 0.22 -22.39 16 6 C 0.04 0.94 5.22 71.24 0.37 1.31 16 7 O -0.31 -8.72 9.13 -73.66 -0.67 -9.39 16 8 C 0.11 2.63 6.68 22.52 0.15 2.78 16 9 C -0.20 -3.09 9.04 22.36 0.20 -2.89 16 10 C -0.07 -0.78 10.04 22.26 0.22 -0.56 16 11 C -0.14 -1.61 10.04 22.28 0.22 -1.38 16 12 C -0.08 -1.26 9.83 22.28 0.22 -1.04 16 13 C -0.10 -2.20 6.33 22.41 0.14 -2.06 16 14 Cl -0.08 -2.12 28.50 -2.72 -0.08 -2.19 16 15 C -0.13 -4.13 6.07 31.99 0.19 -3.94 16 16 C 0.15 7.12 5.87 86.86 0.51 7.63 16 17 N -0.62 -32.79 3.39 -691.97 -2.35 -35.14 16 18 C -0.24 -14.19 10.27 84.03 0.86 -13.33 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 20 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 21 N -0.94 -54.71 10.09 21.65 0.22 -54.49 16 22 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 C 0.14 6.23 6.19 86.73 0.54 6.76 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.06 2.03 5.97 -2.39 -0.01 2.02 16 29 H 0.07 1.96 8.07 -2.39 -0.02 1.94 16 30 H 0.42 8.80 8.49 -92.71 -0.79 8.01 16 31 H 0.13 1.69 7.65 -2.39 -0.02 1.68 16 32 H 0.11 1.97 7.67 -2.39 -0.02 1.95 16 33 H 0.16 1.59 6.30 -2.91 -0.02 1.57 16 34 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.08 2.69 8.05 -2.39 -0.02 2.68 16 38 H 0.11 2.64 8.07 -2.39 -0.02 2.62 16 39 H 0.08 4.04 5.87 -2.39 -0.01 4.03 16 40 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 41 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.00 0.17 6.90 -2.39 -0.02 0.15 16 43 H 0.02 0.88 7.77 -2.39 -0.02 0.86 16 Total: -1.00 -78.67 365.45 2.81 -75.86 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.26 Total: 12.34 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 5.34 Total: 8.82 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.28 Total: -111.34 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.46 Total: -31.77 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 17 Polarization: -2.12 SS G_CDS: -0.08 Total: -2.19 kcal Total: -78.67 2.81 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270655270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.618 kcal (2) G-P(sol) polarization free energy of solvation -78.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds