Wall clock time and date at job start Tue Mar 31 2020 20:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35560 * 125.82906 * 2 1 4 4 N 1.35402 * 107.16379 * 179.78712 * 3 2 1 5 5 H 0.97001 * 126.44370 * 180.24158 * 4 3 2 6 6 C 1.36672 * 107.11953 * 0.36568 * 4 3 2 7 7 C 1.47409 * 125.86090 * 179.89869 * 6 4 3 8 8 O 1.21598 * 120.00194 * 359.70581 * 7 6 4 9 9 N 1.34772 * 119.99585 * 179.71667 * 7 6 4 10 10 C 1.46504 * 119.99740 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.91599 * 37.44825 * 10 9 7 12 12 C 1.55158 * 111.00258 * 161.34484 * 10 9 7 13 13 C 1.54340 * 103.02056 * 153.38004 * 12 10 9 14 14 N 1.47021 * 107.26360 * 338.14333 * 13 12 10 15 15 C 1.34778 * 125.64597 * 178.85217 * 14 13 12 16 16 O 1.21278 * 119.99748 * 179.68858 * 15 14 13 17 17 C 1.50697 * 120.00209 * 359.68671 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31630 * 119.99849 * 180.27695 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 0.28024 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99557 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00077 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99899 * 23 21 19 27 27 C 1.47426 * 108.70439 * 358.58153 * 14 13 12 28 28 N 1.31615 * 108.26852 * 359.62990 * 6 4 3 29 29 H 1.08999 * 109.47115 * 270.00245 * 1 2 3 30 30 H 1.09001 * 109.46701 * 29.99855 * 1 2 3 31 31 H 1.09003 * 109.46892 * 149.99867 * 1 2 3 32 32 H 1.08006 * 126.41681 * 359.97438 * 3 2 1 33 33 H 0.97004 * 120.00308 * 359.97438 * 9 7 6 34 34 H 1.09002 * 110.72451 * 271.93722 * 12 10 9 35 35 H 1.09006 * 110.72264 * 35.21303 * 12 10 9 36 36 H 1.08996 * 109.98931 * 218.66496 * 13 12 10 37 37 H 1.09003 * 109.77829 * 97.49290 * 13 12 10 38 38 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 39 39 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 40 40 H 0.97005 * 119.99878 * 180.02562 * 22 21 19 41 41 H 1.09000 * 110.36487 * 143.19330 * 27 14 13 42 42 H 1.08996 * 110.36717 * 265.51803 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0048 5 1 4.3790 1.2206 0.0093 6 6 3.5465 -0.7005 -0.0007 7 6 4.7174 -1.5959 -0.0003 8 8 5.8401 -1.1288 -0.0002 9 7 4.5436 -2.9324 -0.0004 10 6 5.7074 -3.8224 -0.0006 11 1 6.5076 -3.4167 0.6184 12 6 5.3155 -5.2503 0.4627 13 6 6.3708 -6.1413 -0.2261 14 7 6.9001 -5.3853 -1.3706 15 6 7.8601 -5.8098 -2.2160 16 8 8.2168 -5.1012 -3.1334 17 6 8.4902 -7.1648 -2.0215 18 16 9.7345 -7.4417 -3.3065 19 6 10.2931 -9.0493 -2.8501 20 1 9.8634 -9.5473 -1.9935 21 6 11.2809 -9.6782 -3.5952 22 7 11.6944 -10.8814 -3.2574 23 14 12.0238 -8.8171 -5.0771 24 1 13.2017 -8.0211 -4.6481 25 1 12.4481 -9.8298 -6.0769 26 1 11.0118 -7.9157 -5.6845 27 6 6.2024 -4.0887 -1.4441 28 7 2.2860 -1.0792 -0.0004 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9712 2.1277 -0.0004 33 1 3.6480 -3.3051 -0.0002 34 1 5.3835 -5.3363 1.5472 35 1 4.3142 -5.5070 0.1166 36 1 5.9087 -7.0652 -0.5739 37 1 7.1759 -6.3673 0.4731 38 1 7.7221 -7.9354 -2.0869 39 1 8.9649 -7.2074 -1.0413 40 1 12.3850 -11.3207 -3.7779 41 1 6.8909 -3.3048 -1.7596 42 1 5.3573 -4.1510 -2.1296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283864178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:21 Heat of formation + Delta-G solvation = -10.158587 kcal Electronic energy + Delta-G solvation = -25514.615186 eV Core-core repulsion = 21621.903330 eV Total energy + Delta-G solvation = -3892.711856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.76878 -40.39788 -39.30336 -37.36590 -34.73432 -33.68711 -32.43142 -32.01189 -30.91779 -29.79623 -28.32908 -27.29799 -25.61089 -24.45224 -23.28891 -21.53415 -21.01605 -20.72813 -19.54300 -19.06721 -17.74510 -17.17751 -16.87645 -16.58221 -16.23427 -15.59462 -15.29857 -14.97361 -14.66673 -14.61228 -14.46378 -14.19496 -13.76906 -13.60791 -13.55402 -13.28305 -13.08162 -12.85305 -12.72342 -12.69332 -12.09954 -11.99664 -11.81501 -11.25662 -11.21045 -10.99703 -10.83328 -10.74898 -10.63703 -10.60930 -9.86232 -9.71024 -9.49573 -8.99452 -8.94296 -8.61370 -8.48800 -6.91319 -6.28139 -3.99895 0.85607 2.00323 2.04160 2.65063 2.90712 2.93782 2.99041 3.24934 3.34592 3.52049 3.60229 3.72188 4.06021 4.28716 4.34482 4.40789 4.53877 4.60800 4.69971 4.71473 4.90463 5.01652 5.11011 5.18929 5.23514 5.23613 5.37502 5.40912 5.47845 5.48389 5.58148 5.64004 5.72048 5.82722 5.94161 6.01671 6.07483 6.29425 6.59979 6.88747 7.30917 7.53047 7.64736 7.94869 8.41760 8.42426 9.18128 10.80974 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001862 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.876699 B =15031.842221 C =15406.934670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.000 4.000 3 C -0.021 4.021 4 N -0.522 5.522 5 H 0.432 0.568 6 C 0.147 3.853 7 C 0.609 3.391 8 O -0.533 6.533 9 N -0.694 5.694 10 C 0.133 3.867 11 H 0.110 0.890 12 C -0.136 4.136 13 C 0.103 3.897 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.515 6.515 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.098 3.902 28 N -0.440 5.440 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.187 0.813 33 H 0.415 0.585 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.085 0.915 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.204 22.021 11.880 34.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.135 4.135 3 C -0.161 4.161 4 N -0.124 5.124 5 H 0.272 0.728 6 C -0.115 4.115 7 C 0.393 3.607 8 O -0.408 6.408 9 N -0.346 5.346 10 C 0.028 3.972 11 H 0.127 0.873 12 C -0.174 4.174 13 C -0.021 4.021 14 N -0.362 5.362 15 C 0.336 3.664 16 O -0.389 6.389 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.026 4.026 28 N -0.164 5.164 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.205 0.795 33 H 0.252 0.748 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.883 22.344 10.423 33.638 hybrid contribution 0.216 0.258 0.507 0.609 sum -22.666 22.602 10.929 33.824 Atomic orbital electron populations 1.20080 0.86850 1.03155 1.02588 1.20932 0.97101 0.87881 1.07552 1.22789 0.82908 1.01203 1.09155 1.42895 1.09337 1.07530 1.52644 0.72847 1.22522 0.93655 0.82418 1.12869 1.16457 0.85592 0.82039 0.76602 1.90897 1.23679 1.75948 1.50247 1.45462 1.10626 1.04538 1.73933 1.22192 0.88484 0.89475 0.97068 0.87257 1.22938 0.99904 0.92720 1.01829 1.22015 0.96569 0.95371 0.88149 1.48347 1.39336 1.18042 1.30491 1.20013 0.77617 0.88097 0.80633 1.90716 1.60827 1.56679 1.30659 1.23252 1.02621 0.95551 1.05338 1.84822 1.45459 1.24172 1.37152 1.22308 1.26121 1.00053 1.18361 0.89351 1.24705 0.95114 0.94230 0.97214 1.69939 1.29026 1.12989 1.39708 0.86741 0.81644 0.80534 0.82983 1.19197 1.19933 1.15910 1.22491 0.97353 0.86720 0.96041 1.70084 0.99085 1.31113 1.16077 0.91084 0.91001 0.90784 0.79549 0.74780 0.88820 0.89527 0.90435 0.90540 0.88441 0.88453 0.91949 0.89663 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.42 36.01 0.38 0.08 16 2 C 0.00 0.00 7.07 -83.00 -0.59 -0.59 16 3 C -0.02 -0.11 11.91 -16.93 -0.20 -0.32 16 4 N -0.52 -3.57 6.14 -10.78 -0.07 -3.64 16 5 H 0.43 2.15 8.96 -40.82 -0.37 1.78 16 6 C 0.15 1.37 7.95 -154.52 -1.23 0.14 16 7 C 0.61 6.38 7.81 -12.53 -0.10 6.28 16 8 O -0.53 -7.09 16.84 5.28 0.09 -7.00 16 9 N -0.69 -5.86 5.23 -52.81 -0.28 -6.13 16 10 C 0.13 1.22 3.32 -65.78 -0.22 1.00 16 11 H 0.11 1.12 7.73 -51.93 -0.40 0.71 16 12 C -0.14 -0.90 6.57 -24.89 -0.16 -1.06 16 13 C 0.10 0.98 6.49 -3.06 -0.02 0.96 16 14 N -0.62 -8.72 3.33 -170.51 -0.57 -9.29 16 15 C 0.55 10.33 7.87 -10.99 -0.09 10.24 16 16 O -0.51 -11.76 16.12 5.56 0.09 -11.68 16 17 C -0.12 -2.32 5.35 36.00 0.19 -2.13 16 18 S -0.14 -3.67 18.54 -107.50 -1.99 -5.67 16 19 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 23 Si 0.86 21.98 27.74 -169.99 -4.72 17.27 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.24 -6.05 6.73 56.52 0.38 -5.67 16 27 C 0.10 1.22 6.60 -2.53 -0.02 1.21 16 28 N -0.44 -4.07 10.89 -7.50 -0.08 -4.16 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.19 0.29 8.06 -52.48 -0.42 -0.14 16 33 H 0.42 2.82 8.20 -40.82 -0.33 2.49 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.46 8.00 -51.93 -0.42 0.04 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 39 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -37.97 375.25 -8.67 -46.64 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.74 Total: 0.07 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.84 Total: 3.76 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.22 Total: -49.04 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.72 Total: 17.27 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.97 -8.67 -46.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283864178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.478 kcal (2) G-P(sol) polarization free energy of solvation -37.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds