Wall clock time and date at job start Tue Mar 31 2020 20:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35560 * 125.82906 * 2 1 4 4 N 1.35402 * 107.16379 * 179.78712 * 3 2 1 5 5 H 0.97001 * 126.44370 * 180.24158 * 4 3 2 6 6 C 1.36672 * 107.11953 * 0.36568 * 4 3 2 7 7 C 1.47409 * 125.86090 * 179.89869 * 6 4 3 8 8 O 1.21598 * 120.00194 * 359.70581 * 7 6 4 9 9 N 1.34772 * 119.99585 * 179.71667 * 7 6 4 10 10 C 1.46504 * 119.99740 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.91599 * 37.44825 * 10 9 7 12 12 C 1.55158 * 111.00258 * 161.34484 * 10 9 7 13 13 C 1.54340 * 103.02056 * 153.38004 * 12 10 9 14 14 N 1.47021 * 107.26360 * 338.14333 * 13 12 10 15 15 C 1.34778 * 125.64597 * 178.85217 * 14 13 12 16 16 O 1.21278 * 119.99748 * 179.68858 * 15 14 13 17 17 C 1.50697 * 120.00209 * 359.68671 * 15 14 13 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31630 * 119.99849 * 180.27695 * 21 19 18 23 23 Si 1.86800 * 120.00065 * 0.28024 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99557 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00077 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99899 * 23 21 19 27 27 C 1.47426 * 108.70439 * 358.58153 * 14 13 12 28 28 N 1.31615 * 108.26852 * 359.62990 * 6 4 3 29 29 H 1.08999 * 109.47115 * 270.00245 * 1 2 3 30 30 H 1.09001 * 109.46701 * 29.99855 * 1 2 3 31 31 H 1.09003 * 109.46892 * 149.99867 * 1 2 3 32 32 H 1.08006 * 126.41681 * 359.97438 * 3 2 1 33 33 H 0.97004 * 120.00308 * 359.97438 * 9 7 6 34 34 H 1.09002 * 110.72451 * 271.93722 * 12 10 9 35 35 H 1.09006 * 110.72264 * 35.21303 * 12 10 9 36 36 H 1.08996 * 109.98931 * 218.66496 * 13 12 10 37 37 H 1.09003 * 109.77829 * 97.49290 * 13 12 10 38 38 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 39 39 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 40 40 H 0.97005 * 119.99878 * 180.02562 * 22 21 19 41 41 H 1.09000 * 110.36487 * 143.19330 * 27 14 13 42 42 H 1.08996 * 110.36717 * 265.51803 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0048 5 1 4.3790 1.2206 0.0093 6 6 3.5465 -0.7005 -0.0007 7 6 4.7174 -1.5959 -0.0003 8 8 5.8401 -1.1288 -0.0002 9 7 4.5436 -2.9324 -0.0004 10 6 5.7074 -3.8224 -0.0006 11 1 6.5076 -3.4167 0.6184 12 6 5.3155 -5.2503 0.4627 13 6 6.3708 -6.1413 -0.2261 14 7 6.9001 -5.3853 -1.3706 15 6 7.8601 -5.8098 -2.2160 16 8 8.2168 -5.1012 -3.1334 17 6 8.4902 -7.1648 -2.0215 18 16 9.7345 -7.4417 -3.3065 19 6 10.2931 -9.0493 -2.8501 20 1 9.8634 -9.5473 -1.9935 21 6 11.2809 -9.6782 -3.5952 22 7 11.6944 -10.8814 -3.2574 23 14 12.0238 -8.8171 -5.0771 24 1 13.2017 -8.0211 -4.6481 25 1 12.4481 -9.8298 -6.0769 26 1 11.0118 -7.9157 -5.6845 27 6 6.2024 -4.0887 -1.4441 28 7 2.2860 -1.0792 -0.0004 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9712 2.1277 -0.0004 33 1 3.6480 -3.3051 -0.0002 34 1 5.3835 -5.3363 1.5472 35 1 4.3142 -5.5070 0.1166 36 1 5.9087 -7.0652 -0.5739 37 1 7.1759 -6.3673 0.4731 38 1 7.7221 -7.9354 -2.0869 39 1 8.9649 -7.2074 -1.0413 40 1 12.3850 -11.3207 -3.7779 41 1 6.8909 -3.3048 -1.7596 42 1 5.3573 -4.1510 -2.1296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283864178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:20 Heat of formation + Delta-G solvation = -39.214061 kcal Electronic energy + Delta-G solvation = -25515.875126 eV Core-core repulsion = 21621.903330 eV Total energy + Delta-G solvation = -3893.971796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.30942 -41.39308 -40.38530 -38.52331 -35.64158 -34.67802 -34.21644 -32.79079 -31.82500 -30.92756 -29.30439 -27.95673 -27.77792 -25.27898 -24.13104 -22.27812 -21.72559 -21.25922 -20.82522 -19.89988 -19.48664 -18.22097 -17.99080 -17.43332 -17.15712 -16.92990 -16.69362 -16.48772 -15.74854 -15.64338 -15.38946 -15.09571 -14.92290 -14.84339 -14.54711 -14.23257 -14.00210 -13.90563 -13.59050 -13.49719 -13.34743 -13.04490 -13.02941 -12.85212 -12.69995 -12.61899 -11.92918 -11.88097 -11.60655 -11.35056 -11.20099 -11.17985 -11.12185 -10.54802 -10.46476 -9.79419 -9.42818 -9.02356 -8.52172 -6.23490 0.23103 0.92540 1.30326 1.32322 1.45228 1.48098 1.49939 1.55187 1.99939 2.23433 2.24244 2.46881 2.67292 2.86025 3.10601 3.27384 3.48923 3.74934 3.91420 3.93010 4.10650 4.13309 4.16096 4.26790 4.37839 4.39556 4.56716 4.69270 4.74366 4.85067 4.90779 4.97881 4.99289 5.02210 5.13190 5.14790 5.32450 5.64719 5.70463 6.10689 6.10951 6.22490 6.27316 6.74125 6.93074 6.94056 6.99127 8.59955 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001862 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.876699 B =15031.842221 C =15406.934670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.027 4.027 3 C 0.002 3.998 4 N -0.519 5.519 5 H 0.439 0.561 6 C 0.112 3.888 7 C 0.607 3.393 8 O -0.571 6.571 9 N -0.681 5.681 10 C 0.142 3.858 11 H 0.099 0.901 12 C -0.117 4.117 13 C 0.089 3.911 14 N -0.614 5.614 15 C 0.547 3.453 16 O -0.567 6.567 17 C -0.100 4.100 18 S -0.181 6.181 19 C -0.527 4.527 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.914 5.914 23 Si 0.912 3.088 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.239 1.239 27 C 0.096 3.904 28 N -0.453 5.453 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.229 0.771 33 H 0.425 0.575 34 H 0.122 0.878 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.277 0.723 41 H 0.052 0.948 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.631 23.340 12.964 37.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.161 4.161 3 C -0.138 4.138 4 N -0.121 5.121 5 H 0.280 0.720 6 C -0.147 4.147 7 C 0.393 3.607 8 O -0.449 6.449 9 N -0.333 5.333 10 C 0.036 3.964 11 H 0.117 0.883 12 C -0.155 4.155 13 C -0.033 4.033 14 N -0.349 5.349 15 C 0.335 3.665 16 O -0.445 6.445 17 C -0.250 4.250 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.084 0.916 21 C -0.158 4.158 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.163 1.163 27 C -0.028 4.028 28 N -0.178 5.178 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.246 0.754 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.361 23.630 11.560 36.540 hybrid contribution 0.776 -0.051 0.297 0.832 sum -24.585 23.579 11.857 36.069 Atomic orbital electron populations 1.20151 0.85055 1.03848 1.03280 1.21547 0.98466 0.87938 1.08195 1.23517 0.81800 1.02685 1.05845 1.43007 1.10345 1.06915 1.51875 0.72040 1.22273 0.93321 0.83303 1.15849 1.16702 0.85535 0.82646 0.75849 1.90871 1.25152 1.76638 1.52218 1.45347 1.10867 1.03957 1.73087 1.22025 0.88663 0.91220 0.94448 0.88283 1.22957 0.99907 0.89416 1.03227 1.22451 0.97831 0.96125 0.86860 1.48266 1.37520 1.18889 1.30246 1.19774 0.78484 0.87371 0.80902 1.90694 1.62938 1.57772 1.33114 1.23190 1.01308 0.96989 1.03541 1.84803 1.48056 1.22141 1.40403 1.22426 1.26063 1.01353 1.17596 0.91618 1.25511 0.95601 0.94881 0.99764 1.70008 1.29881 1.14205 1.41116 0.85907 0.80715 0.79792 0.80208 1.18800 1.18157 1.16321 1.22580 0.96534 0.85030 0.98649 1.70026 0.99245 1.32437 1.16062 0.90341 0.88768 0.91661 0.75435 0.73584 0.85970 0.87270 0.88879 0.89488 0.86560 0.86771 0.91339 0.92891 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.42 71.24 0.74 0.32 16 2 C -0.03 -0.33 7.07 41.75 0.30 -0.04 16 3 C 0.00 0.01 11.91 83.52 0.99 1.01 16 4 N -0.52 -6.44 6.14 -188.01 -1.16 -7.60 16 5 H 0.44 3.98 8.96 -92.71 -0.83 3.15 16 6 C 0.11 2.02 7.95 136.28 1.08 3.11 16 7 C 0.61 12.72 7.81 86.66 0.68 13.39 16 8 O -0.57 -15.67 16.84 -4.02 -0.07 -15.73 16 9 N -0.68 -10.82 5.23 -439.24 -2.30 -13.11 16 10 C 0.14 2.42 3.32 46.38 0.15 2.57 16 11 H 0.10 1.96 7.73 -2.39 -0.02 1.94 16 12 C -0.12 -1.15 6.57 31.79 0.21 -0.95 16 13 C 0.09 1.45 6.49 86.73 0.56 2.02 16 14 N -0.61 -16.55 3.33 -811.78 -2.70 -19.25 16 15 C 0.55 20.52 7.87 87.66 0.69 21.21 16 16 O -0.57 -26.53 16.12 -3.02 -0.05 -26.58 16 17 C -0.10 -3.88 5.35 71.23 0.38 -3.50 16 18 S -0.18 -9.37 18.54 -56.49 -1.05 -10.42 16 19 C -0.53 -30.86 10.04 67.96 0.68 -30.18 16 20 H 0.07 4.02 8.03 -2.91 -0.02 3.99 16 21 C 0.05 2.84 5.50 84.86 0.47 3.31 16 22 N -0.91 -55.70 13.97 21.65 0.30 -55.40 16 23 Si 0.91 45.61 27.74 68.60 1.90 47.51 16 24 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.24 -12.05 6.73 99.48 0.67 -11.38 16 27 C 0.10 2.38 6.60 86.85 0.57 2.96 16 28 N -0.45 -7.90 10.89 -177.63 -1.94 -9.83 16 29 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.23 -0.28 8.06 -2.91 -0.02 -0.31 16 33 H 0.43 5.07 8.20 -92.71 -0.76 4.31 16 34 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 0.67 8.00 -2.38 -0.02 0.65 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 39 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 40 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 41 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -85.64 375.25 -0.09 -85.73 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -0.56 Total: 9.45 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 7.51 Total: 15.23 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -7.78 Total: -105.19 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.12 Total: -42.31 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: -9.37 SS G_CDS: -1.05 Total: -10.42 kcal Total: -85.64 -0.09 -85.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283864178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.513 kcal (2) G-P(sol) polarization free energy of solvation -85.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds