Wall clock time and date at job start Tue Mar 31 2020 20:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35371 * 126.38375 * 2 1 4 4 C 1.41496 * 105.50187 * 180.02562 * 3 2 1 5 5 C 1.47706 * 126.51838 * 180.02562 * 4 3 2 6 6 O 1.21575 * 120.00205 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00380 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00340 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.84627 * 23.80147 * 8 7 5 10 10 C 1.53777 * 113.61493 * 155.00185 * 8 7 5 11 11 C 1.53784 * 87.08379 * 139.98169 * 10 8 7 12 12 H 1.08997 * 113.61102 * 219.93492 * 11 10 8 13 13 N 1.46494 * 113.61606 * 89.11248 * 11 10 8 14 14 C 1.34778 * 120.00443 * 155.00111 * 13 11 10 15 15 O 1.21285 * 119.99301 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00655 * 179.97438 * 14 13 11 17 17 S 1.80993 * 109.47155 * 180.02562 * 16 14 13 18 18 C 1.76208 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99811 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99777 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46981 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46896 * 120.00144 * 22 20 18 25 25 H 1.48497 * 109.47009 * 240.00280 * 22 20 18 26 26 C 1.53778 * 113.61217 * 252.49757 * 8 7 5 27 27 N 1.31814 * 106.96607 * 359.97438 * 4 3 2 28 28 N 1.28468 * 110.07177 * 0.02562 * 27 4 3 29 29 H 0.96995 * 124.88389 * 179.97438 * 28 27 4 30 30 H 1.09001 * 109.47282 * 90.00082 * 1 2 3 31 31 H 1.09002 * 109.46621 * 210.00030 * 1 2 3 32 32 H 1.08994 * 109.47050 * 329.99372 * 1 2 3 33 33 H 1.08002 * 127.24364 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99970 * 359.97438 * 7 5 4 35 35 H 1.09006 * 113.61141 * 254.53038 * 10 8 7 36 36 H 1.08997 * 113.61837 * 25.42645 * 10 8 7 37 37 H 0.97005 * 120.00033 * 334.99908 * 13 11 10 38 38 H 1.09001 * 109.46907 * 300.00627 * 16 14 13 39 39 H 1.09005 * 109.46662 * 59.99833 * 16 14 13 40 40 H 0.97001 * 119.99410 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61998 * 334.56648 * 26 8 7 42 42 H 1.09003 * 113.61736 * 105.47072 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5855 -0.0006 5 6 4.8764 1.3813 -0.0003 6 8 4.8213 2.5958 0.0001 7 7 6.0730 0.7611 -0.0015 8 6 7.3072 1.5504 -0.0018 9 1 7.1688 2.5524 0.4044 10 6 8.5146 0.8061 0.5924 11 6 9.3551 1.4335 -0.5322 12 1 10.0911 0.7522 -0.9592 13 7 9.9228 2.7379 -0.1827 14 6 11.0388 3.1745 -0.7996 15 8 11.5727 2.4874 -1.6446 16 6 11.6225 4.5166 -0.4405 17 16 13.1056 4.8149 -1.4341 18 6 13.5669 6.4031 -0.8261 19 1 12.9729 6.8821 -0.0618 20 6 14.6936 7.0385 -1.3294 21 7 15.4172 6.4548 -2.2613 22 14 15.1822 8.7225 -0.6854 23 1 14.2111 9.1571 0.3507 24 1 16.5408 8.6498 -0.0903 25 1 15.1833 9.6991 -1.8040 26 6 8.0536 1.5261 -1.3461 27 7 3.5420 -0.7296 -0.0004 28 7 2.3081 -1.0871 -0.0002 29 1 1.9967 -2.0057 -0.0004 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 2.0056 2.1260 0.0004 34 1 6.1171 -0.2079 -0.0022 35 1 8.7923 1.1499 1.5888 36 1 8.4351 -0.2789 0.5249 37 1 9.4955 3.2876 0.4928 38 1 10.8885 5.2972 -0.6405 39 1 11.8851 4.5272 0.6174 40 1 16.2043 6.8991 -2.6133 41 1 7.8481 0.6380 -1.9437 42 1 7.9592 2.4513 -1.9147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284039996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:04 Heat of formation + Delta-G solvation = 17.635808 kcal Electronic energy + Delta-G solvation = -24958.732997 eV Core-core repulsion = 21067.226396 eV Total energy + Delta-G solvation = -3891.506601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.15048 -40.50356 -39.19089 -37.80343 -34.28571 -33.28618 -32.56559 -32.39959 -32.00297 -29.03256 -27.60599 -25.95545 -25.67789 -25.38703 -23.28902 -21.73498 -20.98544 -20.32274 -19.60029 -18.18965 -17.82094 -17.24419 -16.82777 -16.36363 -16.05389 -15.88437 -14.99728 -14.89318 -14.77780 -14.52248 -14.33666 -14.24352 -13.71088 -13.68606 -13.53567 -13.12289 -12.89823 -12.87223 -12.73147 -12.64276 -12.19658 -11.86278 -11.37428 -11.05144 -11.01631 -10.98964 -10.75246 -10.72667 -10.37380 -9.88622 -9.77643 -9.44687 -9.39787 -9.28224 -9.04979 -8.85499 -8.20400 -6.46944 -6.19156 -3.89357 1.13627 1.62327 2.31354 2.88735 3.02982 3.06659 3.10174 3.24124 3.30423 3.35211 3.71492 3.97954 4.13865 4.21354 4.23124 4.38659 4.43939 4.74912 4.80556 4.86931 4.94266 5.11578 5.15284 5.16305 5.23318 5.39002 5.42246 5.43504 5.57730 5.67278 5.69941 5.89422 5.90336 5.92841 5.98399 6.17996 6.22819 6.45210 6.69880 7.13035 7.42199 7.62954 7.71824 7.92264 8.38434 8.62616 9.26528 10.88360 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.001625 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.856826 B =17225.181942 C =17851.469070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.013 3.987 3 C -0.178 4.178 4 C -0.010 4.010 5 C 0.604 3.396 6 O -0.528 6.528 7 N -0.706 5.706 8 C 0.121 3.879 9 H 0.118 0.882 10 C -0.152 4.152 11 C 0.129 3.871 12 H 0.110 0.890 13 N -0.722 5.722 14 C 0.536 3.464 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.164 4.164 27 N -0.259 5.259 28 N -0.380 5.380 29 H 0.445 0.555 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.399 0.601 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.886 -17.800 7.719 36.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.171 4.171 5 C 0.388 3.612 6 O -0.402 6.402 7 N -0.357 5.357 8 C 0.016 3.984 9 H 0.136 0.864 10 C -0.191 4.191 11 C 0.022 3.978 12 H 0.128 0.872 13 N -0.376 5.376 14 C 0.322 3.678 15 O -0.389 6.389 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.204 4.204 27 N -0.096 5.096 28 N -0.095 5.095 29 H 0.289 0.711 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.181 0.819 34 H 0.242 0.758 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -29.175 -18.948 6.192 35.335 hybrid contribution -1.211 1.804 1.673 2.742 sum -30.386 -17.143 7.865 35.764 Atomic orbital electron populations 1.20377 0.86353 1.04137 1.03576 1.21499 0.95533 0.87086 1.07128 1.21571 0.90429 0.99925 1.08622 1.21958 0.95321 0.89745 1.10091 1.16929 0.81770 0.86467 0.76047 1.90826 1.86741 1.12873 1.49796 1.45834 1.04946 1.10557 1.74331 1.22734 0.81391 0.96737 0.97506 0.86441 1.23750 0.94624 1.01136 0.99618 1.21529 0.94504 0.86250 0.95533 0.87239 1.45728 1.28687 1.19555 1.43608 1.20333 0.79165 0.87699 0.80598 1.90699 1.59829 1.57060 1.31343 1.23539 1.05217 0.95829 1.05877 1.85387 1.23513 1.23864 1.50615 1.22920 1.14681 1.03871 1.26825 0.90838 1.24989 0.95287 0.98540 0.94759 1.70030 1.16127 1.37973 1.26193 0.86117 0.78440 0.82219 0.78722 1.19602 1.20591 1.20574 1.23965 0.95540 1.03823 0.97115 1.73518 1.01736 1.15003 1.19314 1.43306 1.02934 1.09643 1.53653 0.71065 0.90104 0.91012 0.89324 0.81875 0.75796 0.89895 0.88303 0.76632 0.89079 0.89121 0.92261 0.88897 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.16 10.44 36.01 0.38 0.22 16 2 C 0.01 0.07 7.23 -82.20 -0.59 -0.52 16 3 C -0.18 -1.49 10.73 -39.36 -0.42 -1.91 16 4 C -0.01 -0.10 7.13 -82.77 -0.59 -0.69 16 5 C 0.60 6.97 7.83 -12.39 -0.10 6.87 16 6 O -0.53 -7.84 16.53 5.30 0.09 -7.75 16 7 N -0.71 -6.44 5.35 -54.00 -0.29 -6.73 16 8 C 0.12 1.14 4.12 -67.12 -0.28 0.87 16 9 H 0.12 1.26 7.46 -51.93 -0.39 0.87 16 10 C -0.15 -1.22 7.58 -25.92 -0.20 -1.42 16 11 C 0.13 1.47 4.32 -67.12 -0.29 1.18 16 12 H 0.11 1.42 7.46 -51.93 -0.39 1.03 16 13 N -0.72 -9.62 5.26 -53.02 -0.28 -9.90 16 14 C 0.54 10.00 7.85 -10.99 -0.09 9.92 16 15 O -0.52 -11.67 15.46 5.55 0.09 -11.59 16 16 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 18 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 22 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.16 -1.75 7.68 -25.92 -0.20 -1.95 16 27 N -0.26 -2.11 11.92 33.42 0.40 -1.71 16 28 N -0.38 -1.97 6.83 33.50 0.23 -1.74 16 29 H 0.44 0.65 8.96 -190.44 -1.71 -1.06 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.41 2.94 8.45 -40.82 -0.35 2.59 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.40 4.27 8.70 -40.82 -0.36 3.92 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -38.56 380.53 -9.44 -48.00 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.95 Total: 2.02 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.96 Total: -3.44 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.79 Total: -45.73 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.56 -9.44 -48.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284039996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.637 kcal (2) G-P(sol) polarization free energy of solvation -38.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds