Wall clock time and date at job start Tue Mar 31 2020 20:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35371 * 126.38375 * 2 1 4 4 C 1.41496 * 105.50187 * 180.02562 * 3 2 1 5 5 C 1.47706 * 126.51838 * 180.02562 * 4 3 2 6 6 O 1.21575 * 120.00205 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00380 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00340 * 179.97438 * 7 5 4 9 9 H 1.09003 * 112.84627 * 23.80147 * 8 7 5 10 10 C 1.53777 * 113.61493 * 155.00185 * 8 7 5 11 11 C 1.53784 * 87.08379 * 139.98169 * 10 8 7 12 12 H 1.08997 * 113.61102 * 219.93492 * 11 10 8 13 13 N 1.46494 * 113.61606 * 89.11248 * 11 10 8 14 14 C 1.34778 * 120.00443 * 155.00111 * 13 11 10 15 15 O 1.21285 * 119.99301 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00655 * 179.97438 * 14 13 11 17 17 S 1.80993 * 109.47155 * 180.02562 * 16 14 13 18 18 C 1.76208 * 99.99894 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99811 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99777 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46981 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46896 * 120.00144 * 22 20 18 25 25 H 1.48497 * 109.47009 * 240.00280 * 22 20 18 26 26 C 1.53778 * 113.61217 * 252.49757 * 8 7 5 27 27 N 1.31814 * 106.96607 * 359.97438 * 4 3 2 28 28 N 1.28468 * 110.07177 * 0.02562 * 27 4 3 29 29 H 0.96995 * 124.88389 * 179.97438 * 28 27 4 30 30 H 1.09001 * 109.47282 * 90.00082 * 1 2 3 31 31 H 1.09002 * 109.46621 * 210.00030 * 1 2 3 32 32 H 1.08994 * 109.47050 * 329.99372 * 1 2 3 33 33 H 1.08002 * 127.24364 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99970 * 359.97438 * 7 5 4 35 35 H 1.09006 * 113.61141 * 254.53038 * 10 8 7 36 36 H 1.08997 * 113.61837 * 25.42645 * 10 8 7 37 37 H 0.97005 * 120.00033 * 334.99908 * 13 11 10 38 38 H 1.09001 * 109.46907 * 300.00627 * 16 14 13 39 39 H 1.09005 * 109.46662 * 59.99833 * 16 14 13 40 40 H 0.97001 * 119.99410 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61998 * 334.56648 * 26 8 7 42 42 H 1.09003 * 113.61736 * 105.47072 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5855 -0.0006 5 6 4.8764 1.3813 -0.0003 6 8 4.8213 2.5958 0.0001 7 7 6.0730 0.7611 -0.0015 8 6 7.3072 1.5504 -0.0018 9 1 7.1688 2.5524 0.4044 10 6 8.5146 0.8061 0.5924 11 6 9.3551 1.4335 -0.5322 12 1 10.0911 0.7522 -0.9592 13 7 9.9228 2.7379 -0.1827 14 6 11.0388 3.1745 -0.7996 15 8 11.5727 2.4874 -1.6446 16 6 11.6225 4.5166 -0.4405 17 16 13.1056 4.8149 -1.4341 18 6 13.5669 6.4031 -0.8261 19 1 12.9729 6.8821 -0.0618 20 6 14.6936 7.0385 -1.3294 21 7 15.4172 6.4548 -2.2613 22 14 15.1822 8.7225 -0.6854 23 1 14.2111 9.1571 0.3507 24 1 16.5408 8.6498 -0.0903 25 1 15.1833 9.6991 -1.8040 26 6 8.0536 1.5261 -1.3461 27 7 3.5420 -0.7296 -0.0004 28 7 2.3081 -1.0871 -0.0002 29 1 1.9967 -2.0057 -0.0004 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 2.0056 2.1260 0.0004 34 1 6.1171 -0.2079 -0.0022 35 1 8.7923 1.1499 1.5888 36 1 8.4351 -0.2789 0.5249 37 1 9.4955 3.2876 0.4928 38 1 10.8885 5.2972 -0.6405 39 1 11.8851 4.5272 0.6174 40 1 16.2043 6.8991 -2.6133 41 1 7.8481 0.6380 -1.9437 42 1 7.9592 2.4513 -1.9147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284039996.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:03 Heat of formation + Delta-G solvation = -12.976754 kcal Electronic energy + Delta-G solvation = -24960.060457 eV Core-core repulsion = 21067.226396 eV Total energy + Delta-G solvation = -3892.834061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.68972 -41.49325 -40.34551 -38.95973 -35.30283 -34.58306 -33.96303 -33.35173 -32.73016 -30.57008 -27.96170 -27.67848 -26.75866 -26.41518 -24.12451 -22.26705 -22.21865 -21.20889 -20.58115 -19.81731 -18.69893 -18.09603 -17.90860 -17.27120 -17.02130 -16.91984 -16.87700 -16.39658 -15.98588 -15.70148 -15.44705 -14.95398 -14.80741 -14.63294 -14.35036 -14.09099 -14.01410 -13.71788 -13.49243 -13.35381 -13.18828 -13.15437 -13.07434 -12.90888 -12.57469 -11.95444 -11.92533 -11.71702 -11.63959 -11.27921 -11.15472 -10.96260 -10.51550 -10.27343 -10.17230 -9.98197 -9.93238 -8.66026 -8.34612 -6.12394 0.45751 1.09254 1.27053 1.41635 1.46960 1.58410 1.59015 1.84404 2.22094 2.24306 2.28656 2.29394 2.99692 3.31884 3.33231 3.40011 3.55492 3.80119 3.86377 3.95357 4.02166 4.07536 4.31325 4.43546 4.51738 4.59256 4.59886 4.71206 4.79473 4.79775 4.87936 4.99022 5.00952 5.03105 5.11654 5.33066 5.38704 5.42727 5.61298 6.08341 6.20508 6.42563 6.49006 6.84277 7.07004 7.12367 7.23593 8.74925 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.029816 B = 0.001625 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.856826 B =17225.181942 C =17851.469070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.033 3.967 3 C -0.210 4.210 4 C -0.038 4.038 5 C 0.600 3.400 6 O -0.572 6.572 7 N -0.692 5.692 8 C 0.123 3.877 9 H 0.106 0.894 10 C -0.126 4.126 11 C 0.116 3.884 12 H 0.096 0.904 13 N -0.698 5.698 14 C 0.538 3.462 15 O -0.562 6.562 16 C -0.132 4.132 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.274 1.274 26 C -0.162 4.162 27 N -0.264 5.264 28 N -0.364 5.364 29 H 0.462 0.538 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.418 0.582 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.415 0.585 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.271 0.729 41 H 0.106 0.894 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.282 -18.683 9.639 39.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.238 4.238 4 C -0.198 4.198 5 C 0.385 3.615 6 O -0.449 6.449 7 N -0.343 5.343 8 C 0.018 3.982 9 H 0.124 0.876 10 C -0.164 4.164 11 C 0.010 3.990 12 H 0.114 0.886 13 N -0.351 5.351 14 C 0.324 3.676 15 O -0.440 6.440 16 C -0.283 4.283 17 S 0.078 5.922 18 C -0.695 4.695 19 H 0.100 0.900 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.202 4.202 27 N -0.102 5.102 28 N -0.082 5.082 29 H 0.311 0.689 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.177 0.823 34 H 0.255 0.745 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -31.619 -19.894 8.150 38.236 hybrid contribution -0.647 1.937 1.077 2.309 sum -32.266 -17.957 9.227 38.062 Atomic orbital electron populations 1.20546 0.83440 1.05593 1.04749 1.21927 0.96993 0.86030 1.04363 1.21749 0.90612 1.00831 1.10603 1.21828 0.95153 0.90508 1.12271 1.17230 0.82782 0.86143 0.75303 1.90790 1.87427 1.14683 1.52029 1.45719 1.04234 1.11051 1.73284 1.22632 0.81997 0.96761 0.96782 0.87623 1.23665 0.91606 1.02335 0.98808 1.21718 0.94452 0.84996 0.97852 0.88631 1.45473 1.26738 1.20384 1.42543 1.20039 0.80223 0.86837 0.80460 1.90687 1.61628 1.58063 1.33614 1.23388 1.01954 0.97551 1.05378 1.85541 1.28366 1.24659 1.53640 1.23252 1.15192 1.04000 1.27048 0.89965 1.26116 0.95076 1.03094 0.94777 1.70188 1.16779 1.40088 1.27702 0.84905 0.78359 0.76331 0.78345 1.18129 1.19809 1.19952 1.23965 0.95299 1.03344 0.97611 1.73440 1.03167 1.14034 1.19529 1.43427 1.02158 1.10690 1.51948 0.68926 0.88921 0.88628 0.88821 0.82350 0.74454 0.88488 0.85598 0.74755 0.87449 0.86977 0.91980 0.87533 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.06 10.44 71.24 0.74 0.68 16 2 C 0.03 0.30 7.23 41.40 0.30 0.60 16 3 C -0.21 -3.46 10.73 22.41 0.24 -3.22 16 4 C -0.04 -0.74 7.13 42.45 0.30 -0.44 16 5 C 0.60 13.91 7.83 86.75 0.68 14.59 16 6 O -0.57 -17.56 16.53 -3.95 -0.07 -17.62 16 7 N -0.69 -11.91 5.35 -443.04 -2.37 -14.29 16 8 C 0.12 2.18 4.12 45.52 0.19 2.37 16 9 H 0.11 2.20 7.46 -2.39 -0.02 2.18 16 10 C -0.13 -1.69 7.58 31.12 0.24 -1.45 16 11 C 0.12 2.52 4.32 45.52 0.20 2.71 16 12 H 0.10 2.43 7.46 -2.39 -0.02 2.41 16 13 N -0.70 -17.92 5.26 -440.04 -2.32 -20.24 16 14 C 0.54 20.13 7.85 87.66 0.69 20.82 16 15 O -0.56 -26.18 15.46 -3.05 -0.05 -26.22 16 16 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 17 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 18 C -0.55 -31.75 9.50 67.95 0.65 -31.11 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 22 Si 1.00 44.29 29.55 68.60 2.03 46.32 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C -0.16 -3.36 7.68 31.12 0.24 -3.12 16 27 N -0.26 -3.91 11.92 -48.18 -0.57 -4.49 16 28 N -0.36 -2.96 6.83 -47.92 -0.33 -3.29 16 29 H 0.46 0.00 8.96 -220.00 -1.97 -1.97 16 30 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.09 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.42 5.27 8.45 -92.71 -0.78 4.49 16 35 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.13 1.11 8.12 -2.39 -0.02 1.09 16 37 H 0.42 8.14 8.70 -92.70 -0.81 7.34 16 38 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 39 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 40 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -87.93 380.53 -1.66 -89.59 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -2.47 Total: 17.27 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.36 Total: -1.18 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -5.30 Total: -98.58 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.11 Total: -43.85 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -87.93 -1.66 -89.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284039996.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.609 kcal (2) G-P(sol) polarization free energy of solvation -87.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds