Wall clock time and date at job start Tue Mar 31 2020 20:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39864 * 125.89999 * 2 1 4 4 C 1.35316 * 107.91828 * 179.86198 * 3 2 1 5 5 N 1.34952 * 107.74600 * 0.40147 * 4 3 2 6 6 C 1.46497 * 126.03662 * 179.75302 * 5 4 3 7 7 C 1.50700 * 109.47706 * 125.01742 * 6 5 4 8 8 O 1.21284 * 119.99528 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00043 * 179.97438 * 7 6 5 10 10 C 1.47065 * 136.06376 * 359.63302 * 9 7 6 11 11 C 1.53747 * 87.89115 * 152.96291 * 10 9 7 12 12 N 1.46502 * 114.26857 * 139.79345 * 11 10 9 13 13 C 1.34770 * 119.99825 * 111.47437 * 12 11 10 14 14 O 1.21281 * 120.00614 * 359.97438 * 13 12 11 15 15 C 1.50707 * 119.99997 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47401 * 180.02562 * 15 13 12 17 17 C 1.76197 * 100.00103 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99724 * 0.02562 * 17 16 15 19 19 C 1.38791 * 120.00305 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00574 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99776 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47357 * 89.99458 * 21 19 17 23 23 H 1.48501 * 109.47121 * 209.99649 * 21 19 17 24 24 H 1.48496 * 109.46932 * 329.99087 * 21 19 17 25 25 C 1.47074 * 136.05383 * 179.97438 * 9 7 6 26 26 N 1.30836 * 125.89591 * 180.31016 * 2 1 3 27 27 H 1.08999 * 109.46995 * 269.71428 * 1 2 3 28 28 H 1.08994 * 109.46790 * 29.71114 * 1 2 3 29 29 H 1.08997 * 109.47305 * 149.71555 * 1 2 3 30 30 H 1.07995 * 126.04278 * 359.97438 * 3 2 1 31 31 H 1.08002 * 126.12602 * 180.14496 * 4 3 2 32 32 H 1.09003 * 109.46897 * 245.02185 * 6 5 4 33 33 H 1.09002 * 109.47192 * 5.01561 * 6 5 4 34 34 H 1.09004 * 113.46393 * 267.70114 * 10 9 7 35 35 H 1.08998 * 113.46371 * 38.12842 * 10 9 7 36 36 H 1.09006 * 114.39462 * 272.67491 * 11 10 9 37 37 H 0.96995 * 119.99759 * 291.47290 * 12 11 10 38 38 H 1.09006 * 109.46433 * 299.99967 * 15 13 12 39 39 H 1.08997 * 109.46841 * 59.99437 * 15 13 12 40 40 H 0.96994 * 120.00651 * 180.02562 * 20 19 17 41 41 H 1.08998 * 113.46534 * 321.87002 * 25 9 7 42 42 H 1.08997 * 113.46477 * 92.24214 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6143 0.7152 0.0031 5 7 3.6087 -0.6343 -0.0040 6 6 4.7898 -1.5009 -0.0088 7 6 4.7128 -2.4616 1.1497 8 8 3.7649 -2.4255 1.9054 9 7 5.6973 -3.3608 1.3461 10 6 6.9584 -3.7136 0.6766 11 6 7.4737 -4.2147 2.0357 12 7 8.2523 -5.4537 1.9648 13 6 9.5746 -5.4343 2.2245 14 8 10.1202 -4.3912 2.5165 15 6 10.3758 -6.7087 2.1510 16 16 12.1059 -6.3576 2.5501 17 6 12.7901 -7.9737 2.3933 18 1 12.1560 -8.8045 2.1208 19 6 14.1441 -8.1791 2.6190 20 7 14.6554 -9.3863 2.5014 21 14 15.2409 -6.7421 3.0897 22 1 15.2691 -6.6042 4.5680 23 1 16.6177 -6.9854 2.5890 24 1 14.7081 -5.4943 2.4862 25 6 5.9804 -4.4251 2.3208 26 7 2.2742 -1.0599 -0.0057 27 1 -0.3633 -0.0051 1.0276 28 1 -0.3633 0.8925 -0.5093 29 1 -0.3634 -0.8874 -0.5182 30 1 1.9924 2.1597 -0.0004 31 1 4.4892 1.3484 0.0061 32 1 4.8258 -2.0608 -0.9434 33 1 5.6884 -0.8910 0.0841 34 1 6.8494 -4.5050 -0.0650 35 1 7.5037 -2.8503 0.2954 36 1 7.9419 -3.4462 2.6508 37 1 7.8161 -6.2879 1.7310 38 1 9.9776 -7.4297 2.8651 39 1 10.3111 -7.1209 1.1441 40 1 15.6015 -9.5299 2.6594 41 1 5.6927 -4.1679 3.3402 42 1 5.6126 -5.4041 2.0136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284882039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:17 Heat of formation + Delta-G solvation = 57.205698 kcal Electronic energy + Delta-G solvation = -25015.251794 eV Core-core repulsion = 21125.461072 eV Total energy + Delta-G solvation = -3889.790722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60584 -40.94286 -39.27762 -38.03696 -34.28917 -33.97340 -32.49951 -31.18726 -30.31580 -29.71453 -28.48609 -26.73118 -25.90328 -25.65872 -22.50530 -21.45992 -20.82351 -20.31894 -19.41802 -17.99145 -17.72888 -17.52565 -17.09458 -16.46336 -16.14841 -15.70320 -15.14001 -15.04600 -14.83282 -14.52781 -14.41611 -13.90544 -13.72253 -13.55954 -13.47126 -13.32470 -13.17822 -12.99303 -12.85430 -12.68992 -12.42165 -12.37470 -12.23035 -11.50076 -11.33262 -11.06443 -10.84125 -10.70660 -10.47406 -9.92757 -9.72923 -9.47701 -9.32178 -9.20110 -9.05921 -8.88738 -8.58913 -6.99901 -6.34685 -4.07618 1.47838 1.89643 2.07681 2.31961 2.52562 2.70215 2.71595 3.22562 3.28785 3.44601 3.55562 3.66930 3.97726 4.09581 4.27130 4.38451 4.42623 4.50012 4.56060 4.60371 4.70069 4.85784 4.93014 4.98753 5.04441 5.12614 5.15409 5.21600 5.32475 5.32778 5.50087 5.54751 5.63200 5.65368 5.77553 5.90556 6.25754 6.37199 6.59629 7.12250 7.36342 7.44442 7.62516 7.88073 8.25965 8.35612 9.11208 10.74463 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.041977 B = 0.001610 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.872969 B =17385.032917 C =17753.383968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.066 3.934 3 C -0.267 4.267 4 C 0.055 3.945 5 N -0.367 5.367 6 C 0.125 3.875 7 C 0.533 3.467 8 O -0.506 6.506 9 N -0.646 5.646 10 C 0.079 3.921 11 C 0.119 3.881 12 N -0.724 5.724 13 C 0.536 3.464 14 O -0.514 6.514 15 C -0.126 4.126 16 S -0.141 6.141 17 C -0.523 4.523 18 H 0.089 0.911 19 C 0.097 3.903 20 N -0.879 5.879 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.236 1.236 25 C 0.098 3.902 26 N -0.268 5.268 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.148 0.852 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.404 0.596 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.699 17.236 -7.542 30.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.297 4.297 4 C -0.090 4.090 5 N -0.149 5.149 6 C 0.000 4.000 7 C 0.321 3.679 8 O -0.379 6.379 9 N -0.385 5.385 10 C -0.046 4.046 11 C 0.011 3.989 12 N -0.378 5.378 13 C 0.322 3.678 14 O -0.388 6.388 15 C -0.276 4.276 16 S 0.086 5.914 17 C -0.671 4.671 18 H 0.107 0.893 19 C -0.112 4.112 20 N -0.515 5.515 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.160 1.160 25 C -0.025 4.025 26 N -0.090 5.090 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.192 0.808 32 H 0.133 0.867 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.239 0.761 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.146 17.698 -6.669 29.890 hybrid contribution 0.002 -0.473 -0.304 0.562 sum -23.143 17.225 -6.973 29.680 Atomic orbital electron populations 1.20157 0.86681 1.03114 1.02998 1.22428 0.97090 0.90828 0.99844 1.21384 0.91576 0.99804 1.16911 1.22553 0.99963 0.84341 1.02105 1.47975 1.04875 1.04235 1.57813 1.21339 0.86250 0.93474 0.98969 1.20016 0.80717 0.80906 0.86306 1.90821 1.30818 1.70236 1.46047 1.49232 1.22578 1.34175 1.32471 1.23787 0.82147 1.01014 0.97633 1.22670 0.90159 0.89341 0.96680 1.45789 1.08746 1.10255 1.73046 1.20380 0.81326 0.90892 0.75192 1.90714 1.69775 1.32771 1.45491 1.23293 1.00866 0.97436 1.06023 1.84808 0.98701 1.16203 1.91727 1.22300 0.97558 0.92198 1.55037 0.89331 1.24707 0.97077 0.95921 0.93523 1.69930 1.13934 1.20624 1.47044 0.86741 0.80724 0.84082 0.80325 1.19189 1.19899 1.15952 1.23362 0.92791 0.91317 0.95066 1.77445 0.85851 1.22458 1.23269 0.90549 0.90496 0.91024 0.83418 0.80813 0.86722 0.85541 0.88768 0.89397 0.84857 0.76051 0.88243 0.88206 0.91877 0.89414 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.01 0.38 -0.12 16 2 C 0.07 0.69 7.22 -82.41 -0.59 0.09 16 3 C -0.27 -2.32 10.74 -40.01 -0.43 -2.75 16 4 C 0.05 0.44 11.45 -17.22 -0.20 0.25 16 5 N -0.37 -3.73 3.40 -62.55 -0.21 -3.94 16 6 C 0.13 0.91 6.82 -5.20 -0.04 0.87 16 7 C 0.53 5.65 8.11 -10.99 -0.09 5.56 16 8 O -0.51 -7.82 16.48 5.55 0.09 -7.73 16 9 N -0.65 -5.42 3.69 -185.10 -0.68 -6.11 16 10 C 0.08 0.50 8.25 -8.38 -0.07 0.43 16 11 C 0.12 0.99 4.62 -67.69 -0.31 0.68 16 12 N -0.72 -6.91 5.39 -53.50 -0.29 -7.20 16 13 C 0.54 8.03 7.85 -10.99 -0.09 7.94 16 14 O -0.51 -9.70 15.45 5.56 0.09 -9.62 16 15 C -0.13 -2.16 6.16 36.01 0.22 -1.93 16 16 S -0.14 -3.35 18.55 -107.50 -1.99 -5.35 16 17 C -0.52 -14.49 10.04 30.94 0.31 -14.17 16 18 H 0.09 2.56 8.03 -52.48 -0.42 2.13 16 19 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 20 N -0.88 -25.85 13.97 55.49 0.78 -25.07 16 21 Si 0.86 21.08 27.74 -169.99 -4.72 16.36 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.24 -5.75 6.74 56.52 0.38 -5.37 16 25 C 0.10 0.76 8.38 -8.52 -0.07 0.69 16 26 N -0.27 -3.45 11.64 33.67 0.39 -3.05 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.13 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.13 1.36 7.45 -51.93 -0.39 0.97 16 37 H 0.40 2.69 8.76 -40.82 -0.36 2.33 16 38 H 0.10 1.58 8.14 -51.91 -0.42 1.16 16 39 H 0.10 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 380.97 15.07 5.74 5.74 Total: -1.00 -39.19 380.97 -7.69 -46.88 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.81 Total: -1.09 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.07 Total: 0.17 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.02 Total: -45.37 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.18 Total: -17.35 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.72 Total: 16.36 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.19 -7.69 -46.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284882039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.085 kcal (2) G-P(sol) polarization free energy of solvation -39.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds