Wall clock time and date at job start Tue Mar 31 2020 20:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35365 * 127.24571 * 2 1 4 4 N 1.35033 * 107.23063 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.89001 * 180.02562 * 4 3 2 6 6 N 1.28474 * 110.22757 * 0.02562 * 4 3 2 7 7 C 1.31807 * 110.07444 * 0.02562 * 6 4 3 8 8 C 1.47706 * 126.51554 * 179.97438 * 7 6 4 9 9 O 1.21579 * 119.99630 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00293 * 0.02562 * 8 7 6 11 11 C 1.47059 * 136.05557 * 359.63368 * 10 8 7 12 12 C 1.53240 * 88.08049 * 207.20215 * 11 10 8 13 13 C 1.53002 * 114.32540 * 220.46864 * 12 11 10 14 14 N 1.46493 * 109.47269 * 268.76006 * 13 12 11 15 15 C 1.34784 * 120.00287 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99595 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00221 * 179.97438 * 15 14 13 18 18 S 1.80994 * 109.47292 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00198 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00039 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99936 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00559 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99770 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47337 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46831 * 120.00614 * 23 21 19 26 26 H 1.48501 * 109.47055 * 240.00235 * 23 21 19 27 27 C 1.47065 * 136.05736 * 179.97438 * 10 8 7 28 28 H 1.08995 * 109.47606 * 89.96960 * 1 2 3 29 29 H 1.09003 * 109.46628 * 209.97165 * 1 2 3 30 30 H 1.08997 * 109.47231 * 329.96338 * 1 2 3 31 31 H 1.08004 * 126.38749 * 359.97438 * 3 2 1 32 32 H 1.09002 * 113.47019 * 321.92880 * 11 10 8 33 33 H 1.08995 * 113.47065 * 92.37554 * 11 10 8 34 34 H 1.09000 * 114.01809 * 87.71766 * 12 11 10 35 35 H 1.09002 * 109.47375 * 28.75987 * 13 12 11 36 36 H 1.09003 * 109.47282 * 148.75586 * 13 12 11 37 37 H 0.97002 * 120.00190 * 359.97438 * 14 13 12 38 38 H 1.09002 * 109.47268 * 300.00605 * 17 15 14 39 39 H 1.09003 * 109.47016 * 59.99975 * 17 15 14 40 40 H 0.97002 * 120.00757 * 179.97438 * 22 21 19 41 41 H 1.08993 * 113.47414 * 267.63151 * 27 10 8 42 42 H 1.09003 * 113.46651 * 38.06889 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3262 1.0776 0.0000 4 7 3.5950 0.6154 -0.0006 5 1 4.3887 1.1731 -0.0004 6 7 3.5998 -0.6693 -0.0015 7 6 2.3634 -1.1263 -0.0021 8 6 1.9506 -2.5445 -0.0037 9 8 0.7698 -2.8339 -0.0046 10 7 2.8830 -3.5178 -0.0042 11 6 4.3524 -3.5765 -0.0100 12 6 4.2439 -4.9379 -0.7050 13 6 5.2439 -5.9823 -0.2049 14 7 6.4611 -5.9215 -1.0177 15 6 7.4876 -6.7554 -0.7577 16 8 7.4033 -7.5564 0.1489 17 6 8.7395 -6.6931 -1.5943 18 16 9.9226 -7.9285 -1.0026 19 6 11.2502 -7.6431 -2.1253 20 1 11.1608 -6.8804 -2.8847 21 6 12.4114 -8.3978 -2.0330 22 7 12.5208 -9.3270 -1.1072 23 14 13.8193 -8.0947 -3.2229 24 1 13.4493 -7.0039 -4.1600 25 1 15.0338 -7.7034 -2.4632 26 1 14.0942 -9.3356 -3.9908 27 6 2.8785 -4.9885 -0.0052 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8896 0.5144 31 1 2.0219 2.1138 -0.0004 32 1 4.8150 -2.8095 -0.6311 33 1 4.7886 -3.6318 0.9873 34 1 4.1874 -4.8780 -1.7919 35 1 5.4920 -5.7783 0.8367 36 1 4.8025 -6.9758 -0.2853 37 1 6.5284 -5.2810 -1.7431 38 1 8.4912 -6.8979 -2.6357 39 1 9.1807 -5.6996 -1.5146 40 1 13.3322 -9.8547 -1.0430 41 1 2.9183 -5.4234 0.9934 42 1 2.0901 -5.4197 -0.6222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284953175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:33 Heat of formation + Delta-G solvation = 40.508998 kcal Electronic energy + Delta-G solvation = -25179.032130 eV Core-core repulsion = 21288.517385 eV Total energy + Delta-G solvation = -3890.514745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.10029 -40.72425 -39.08926 -38.08538 -34.51257 -33.44763 -32.43726 -32.14956 -30.76122 -29.11599 -27.52152 -26.43726 -26.11177 -25.42659 -23.69550 -21.25260 -20.91959 -20.28439 -19.27743 -18.52185 -17.88378 -17.27321 -16.70093 -16.27861 -16.19327 -16.15461 -15.26345 -15.09167 -14.81297 -14.38559 -14.25871 -13.93248 -13.59618 -13.51706 -13.25462 -13.20350 -13.07001 -12.92722 -12.61303 -12.53912 -12.40314 -11.79632 -11.65390 -11.28843 -11.08008 -11.02759 -10.89115 -10.76124 -10.29041 -9.88780 -9.81368 -9.42991 -9.30850 -9.08728 -9.02228 -8.90920 -8.23770 -6.50625 -6.22589 -3.93022 1.17150 1.65277 2.27021 2.58787 2.99228 3.07300 3.08825 3.20758 3.27177 3.31439 3.62854 3.89777 4.01334 4.19508 4.29805 4.48570 4.55535 4.69889 4.84193 4.86855 5.07721 5.09770 5.12717 5.15657 5.24322 5.26913 5.39787 5.43834 5.51108 5.59347 5.65934 5.71776 5.76180 5.88647 5.92851 6.08541 6.13438 6.50569 6.57801 7.30349 7.36679 7.59089 7.67977 7.85343 8.34599 8.59614 9.22943 10.84862 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.001756 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.560803 B =15945.504407 C =16929.911486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.146 4.146 3 C -0.020 4.020 4 N -0.381 5.381 5 H 0.448 0.552 6 N -0.251 5.251 7 C -0.010 4.010 8 C 0.633 3.367 9 O -0.530 6.530 10 N -0.637 5.637 11 C 0.112 3.888 12 C -0.140 4.140 13 C 0.135 3.865 14 N -0.738 5.738 15 C 0.532 3.468 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.118 3.882 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.185 0.815 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.973 22.393 0.786 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C -0.164 4.164 4 N -0.095 5.095 5 H 0.293 0.707 6 N -0.088 5.088 7 C -0.171 4.171 8 C 0.421 3.579 9 O -0.405 6.405 10 N -0.372 5.372 11 C -0.011 4.011 12 C -0.159 4.159 13 C 0.010 3.990 14 N -0.393 5.393 15 C 0.318 3.682 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.005 4.005 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.202 0.798 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.758 20.552 2.404 30.026 hybrid contribution 0.825 2.210 -2.120 3.171 sum -20.933 22.761 0.284 30.925 Atomic orbital electron populations 1.20189 0.87945 1.03156 1.02512 1.20411 0.97685 0.90322 1.07217 1.22732 0.84115 1.00642 1.08903 1.43286 1.08718 1.04472 1.53007 0.70727 1.73600 1.23041 0.93752 1.18404 1.21723 0.89611 0.94581 1.11195 1.16292 0.83917 0.81683 0.75997 1.90792 1.16159 1.82336 1.51182 1.49284 1.08167 1.07095 1.72651 1.23135 0.80095 0.96579 1.01273 1.23231 0.95568 0.95578 1.01519 1.21128 0.84028 0.98484 0.95373 1.45971 1.16139 1.40372 1.36855 1.20302 0.83845 0.79760 0.84284 1.90709 1.81019 1.36588 1.30803 1.23530 0.97666 1.06822 1.02410 1.85406 1.09979 1.42987 1.45049 1.22909 1.01989 1.24191 1.19251 0.90872 1.24992 0.98083 0.94500 0.96027 1.70024 1.27711 1.20568 1.31957 0.86120 0.80951 0.78263 0.80173 1.19634 1.20586 1.20562 1.22962 0.96494 0.79793 1.01268 0.91336 0.89938 0.91843 0.79786 0.89422 0.89196 0.86975 0.90946 0.90707 0.76736 0.89203 0.89217 0.92230 0.88920 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.92 36.00 0.36 -0.24 16 2 C -0.15 -1.26 6.25 -104.41 -0.65 -1.91 16 3 C -0.02 -0.11 11.97 -17.17 -0.21 -0.31 16 4 N -0.38 -2.13 6.83 30.47 0.21 -1.92 16 5 H 0.45 0.85 8.96 -190.44 -1.71 -0.86 16 6 N -0.25 -2.26 10.77 33.42 0.36 -1.90 16 7 C -0.01 -0.11 7.10 -82.77 -0.59 -0.70 16 8 C 0.63 7.66 8.08 -12.39 -0.10 7.56 16 9 O -0.53 -7.66 15.89 5.30 0.08 -7.58 16 10 N -0.64 -6.35 3.69 -186.58 -0.69 -7.04 16 11 C 0.11 0.89 7.35 -8.65 -0.06 0.83 16 12 C -0.14 -1.02 4.09 -90.23 -0.37 -1.39 16 13 C 0.13 1.32 5.59 -4.04 -0.02 1.30 16 14 N -0.74 -8.79 5.56 -60.30 -0.33 -9.13 16 15 C 0.53 9.41 7.85 -10.98 -0.09 9.33 16 16 O -0.52 -11.34 15.86 5.56 0.09 -11.25 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 23 Si 0.92 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.12 0.94 8.20 -8.51 -0.07 0.87 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.78 6.72 -51.93 -0.35 0.43 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.19 0.28 8.06 -52.48 -0.42 -0.14 16 32 H 0.09 0.69 7.51 -51.93 -0.39 0.30 16 33 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 3.60 8.47 -40.82 -0.35 3.25 16 38 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 39 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -38.65 377.44 -9.43 -48.08 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.95 Total: -1.83 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.38 Total: -0.24 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.28 Total: -45.22 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.65 -9.43 -48.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284953175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.584 kcal (2) G-P(sol) polarization free energy of solvation -38.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds