Wall clock time and date at job start Tue Mar 31 2020 20:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35365 * 127.24571 * 2 1 4 4 N 1.35033 * 107.23063 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.89001 * 180.02562 * 4 3 2 6 6 N 1.28474 * 110.22757 * 0.02562 * 4 3 2 7 7 C 1.31807 * 110.07444 * 0.02562 * 6 4 3 8 8 C 1.47706 * 126.51554 * 179.97438 * 7 6 4 9 9 O 1.21579 * 119.99630 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00293 * 0.02562 * 8 7 6 11 11 C 1.47059 * 136.05557 * 359.63368 * 10 8 7 12 12 C 1.53240 * 88.08049 * 207.20215 * 11 10 8 13 13 C 1.53002 * 114.32540 * 220.46864 * 12 11 10 14 14 N 1.46493 * 109.47269 * 268.76006 * 13 12 11 15 15 C 1.34784 * 120.00287 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99595 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00221 * 179.97438 * 15 14 13 18 18 S 1.80994 * 109.47292 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00198 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00039 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99936 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00559 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99770 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47337 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46831 * 120.00614 * 23 21 19 26 26 H 1.48501 * 109.47055 * 240.00235 * 23 21 19 27 27 C 1.47065 * 136.05736 * 179.97438 * 10 8 7 28 28 H 1.08995 * 109.47606 * 89.96960 * 1 2 3 29 29 H 1.09003 * 109.46628 * 209.97165 * 1 2 3 30 30 H 1.08997 * 109.47231 * 329.96338 * 1 2 3 31 31 H 1.08004 * 126.38749 * 359.97438 * 3 2 1 32 32 H 1.09002 * 113.47019 * 321.92880 * 11 10 8 33 33 H 1.08995 * 113.47065 * 92.37554 * 11 10 8 34 34 H 1.09000 * 114.01809 * 87.71766 * 12 11 10 35 35 H 1.09002 * 109.47375 * 28.75987 * 13 12 11 36 36 H 1.09003 * 109.47282 * 148.75586 * 13 12 11 37 37 H 0.97002 * 120.00190 * 359.97438 * 14 13 12 38 38 H 1.09002 * 109.47268 * 300.00605 * 17 15 14 39 39 H 1.09003 * 109.47016 * 59.99975 * 17 15 14 40 40 H 0.97002 * 120.00757 * 179.97438 * 22 21 19 41 41 H 1.08993 * 113.47414 * 267.63151 * 27 10 8 42 42 H 1.09003 * 113.46651 * 38.06889 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3262 1.0776 0.0000 4 7 3.5950 0.6154 -0.0006 5 1 4.3887 1.1731 -0.0004 6 7 3.5998 -0.6693 -0.0015 7 6 2.3634 -1.1263 -0.0021 8 6 1.9506 -2.5445 -0.0037 9 8 0.7698 -2.8339 -0.0046 10 7 2.8830 -3.5178 -0.0042 11 6 4.3524 -3.5765 -0.0100 12 6 4.2439 -4.9379 -0.7050 13 6 5.2439 -5.9823 -0.2049 14 7 6.4611 -5.9215 -1.0177 15 6 7.4876 -6.7554 -0.7577 16 8 7.4033 -7.5564 0.1489 17 6 8.7395 -6.6931 -1.5943 18 16 9.9226 -7.9285 -1.0026 19 6 11.2502 -7.6431 -2.1253 20 1 11.1608 -6.8804 -2.8847 21 6 12.4114 -8.3978 -2.0330 22 7 12.5208 -9.3270 -1.1072 23 14 13.8193 -8.0947 -3.2229 24 1 13.4493 -7.0039 -4.1600 25 1 15.0338 -7.7034 -2.4632 26 1 14.0942 -9.3356 -3.9908 27 6 2.8785 -4.9885 -0.0052 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8896 0.5144 31 1 2.0219 2.1138 -0.0004 32 1 4.8150 -2.8095 -0.6311 33 1 4.7886 -3.6318 0.9873 34 1 4.1874 -4.8780 -1.7919 35 1 5.4920 -5.7783 0.8367 36 1 4.8025 -6.9758 -0.2853 37 1 6.5284 -5.2810 -1.7431 38 1 8.4912 -6.8979 -2.6357 39 1 9.1807 -5.6996 -1.5146 40 1 13.3322 -9.8547 -1.0430 41 1 2.9183 -5.4234 0.9934 42 1 2.0901 -5.4197 -0.6222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284953175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:33 Heat of formation + Delta-G solvation = 10.698933 kcal Electronic energy + Delta-G solvation = -25180.324791 eV Core-core repulsion = 21288.517385 eV Total energy + Delta-G solvation = -3891.807407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.64634 -41.50819 -40.39870 -38.99593 -35.68898 -34.56456 -34.00593 -32.86218 -31.78393 -30.31798 -28.09703 -27.70491 -27.11157 -26.89220 -24.41298 -22.00222 -21.71078 -21.35440 -19.98873 -19.77432 -19.02937 -18.06003 -17.72505 -17.57022 -17.05221 -16.87182 -16.84754 -16.50354 -16.14368 -15.69250 -15.21404 -14.91908 -14.68158 -14.47480 -14.25996 -14.06226 -13.94322 -13.80277 -13.60165 -13.54822 -13.13707 -13.12952 -12.98468 -12.89030 -12.58783 -12.39512 -11.91358 -11.70203 -11.60739 -11.14285 -11.13393 -10.89262 -10.48927 -10.23563 -10.05361 -9.89717 -9.72818 -8.63568 -8.32976 -6.10294 0.47271 1.15330 1.29500 1.42482 1.49056 1.58760 1.64213 1.67533 2.12722 2.24912 2.28769 2.34479 3.01325 3.17651 3.30273 3.37263 3.74814 3.82672 3.95701 4.04135 4.08732 4.19796 4.35351 4.39813 4.49424 4.54875 4.56746 4.58305 4.61016 4.75698 4.79753 4.84364 4.89135 5.07548 5.18384 5.20367 5.44301 5.48589 5.50595 6.14851 6.22016 6.53310 6.57232 6.76849 7.06507 7.08748 7.30402 8.76368 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.001756 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.560803 B =15945.504407 C =16929.911486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.178 4.178 3 C 0.007 3.993 4 N -0.365 5.365 5 H 0.465 0.535 6 N -0.266 5.266 7 C -0.042 4.042 8 C 0.622 3.378 9 O -0.568 6.568 10 N -0.642 5.642 11 C 0.115 3.885 12 C -0.116 4.116 13 C 0.137 3.863 14 N -0.710 5.710 15 C 0.535 3.465 16 O -0.566 6.566 17 C -0.130 4.130 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.256 1.256 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.112 3.888 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.101 0.899 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.704 25.430 -0.793 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.188 4.188 3 C -0.138 4.138 4 N -0.082 5.082 5 H 0.313 0.687 6 N -0.104 5.104 7 C -0.202 4.202 8 C 0.412 3.588 9 O -0.446 6.446 10 N -0.375 5.375 11 C -0.007 4.007 12 C -0.135 4.135 13 C 0.012 3.988 14 N -0.365 5.365 15 C 0.320 3.680 16 O -0.445 6.445 17 C -0.282 4.282 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.010 4.010 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.255 0.745 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.485 23.633 0.796 31.949 hybrid contribution 0.643 1.383 -1.605 2.214 sum -20.842 25.016 -0.809 32.570 Atomic orbital electron populations 1.20123 0.87801 1.02979 1.02387 1.20723 0.98335 0.90859 1.08924 1.23303 0.83107 1.01711 1.05679 1.43433 1.09828 1.03742 1.51186 0.68685 1.73514 1.22405 0.95325 1.19110 1.21711 0.90810 0.94312 1.13319 1.16669 0.83741 0.82772 0.75620 1.90754 1.17605 1.83107 1.53136 1.49397 1.08837 1.07566 1.71726 1.23206 0.79026 0.96829 1.01673 1.23027 0.94149 0.94236 1.02076 1.21213 0.83302 0.99221 0.95030 1.45684 1.15143 1.38784 1.36851 1.20005 0.84376 0.80100 0.83481 1.90701 1.81902 1.38983 1.32866 1.23381 0.96550 1.04919 1.03307 1.85585 1.13016 1.47169 1.46865 1.23246 1.02324 1.24403 1.19287 0.89855 1.26115 1.01174 0.94014 0.97896 1.70187 1.28702 1.21835 1.34080 0.84917 0.76850 0.78583 0.77666 1.17975 1.20016 1.20052 1.23106 0.96820 0.79112 1.01992 0.91462 0.92781 0.89265 0.75426 0.88910 0.88853 0.85535 0.91181 0.90973 0.74543 0.87199 0.87096 0.92046 0.88064 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.92 71.23 0.71 -0.39 16 2 C -0.18 -2.86 6.25 -19.73 -0.12 -2.99 16 3 C 0.01 0.05 11.97 83.54 1.00 1.05 16 4 N -0.37 -3.11 6.83 -57.51 -0.39 -3.50 16 5 H 0.46 0.28 8.96 -219.99 -1.97 -1.69 16 6 N -0.27 -4.38 10.77 -48.18 -0.52 -4.89 16 7 C -0.04 -0.88 7.10 42.46 0.30 -0.58 16 8 C 0.62 15.40 8.08 86.75 0.70 16.10 16 9 O -0.57 -17.29 15.89 -3.97 -0.06 -17.35 16 10 N -0.64 -12.50 3.69 -862.48 -3.18 -15.68 16 11 C 0.11 1.66 7.35 83.09 0.61 2.27 16 12 C -0.12 -1.46 4.09 -10.54 -0.04 -1.51 16 13 C 0.14 2.44 5.59 86.38 0.48 2.93 16 14 N -0.71 -15.27 5.56 -463.06 -2.57 -17.84 16 15 C 0.53 18.33 7.85 87.66 0.69 19.02 16 16 O -0.57 -25.04 15.86 -3.02 -0.05 -25.08 16 17 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 18 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 19 C -0.54 -30.64 9.50 67.95 0.65 -30.00 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -55.59 13.22 21.65 0.29 -55.30 16 23 Si 1.00 43.10 29.55 68.60 2.03 45.13 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.11 1.71 8.20 83.18 0.68 2.39 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 1.10 6.72 -2.39 -0.02 1.08 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.23 -0.43 8.06 -2.91 -0.02 -0.45 16 32 H 0.09 1.28 7.51 -2.39 -0.02 1.26 16 33 H 0.09 1.31 7.88 -2.39 -0.02 1.29 16 34 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.37 7.81 -2.39 -0.02 1.35 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.42 6.09 8.47 -92.71 -0.79 5.30 16 38 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.11 3.70 8.14 -2.39 -0.02 3.69 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -88.21 377.44 -0.75 -88.96 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -1.68 Total: 10.09 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.56 Total: 5.00 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.38 Total: -97.22 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -0.11 Total: -42.44 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -88.21 -0.75 -88.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284953175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.664 kcal (2) G-P(sol) polarization free energy of solvation -88.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds