Wall clock time and date at job start Tue Mar 31 2020 20:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35372 * 127.24590 * 2 1 4 4 N 1.35029 * 107.22933 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.88469 * 180.02562 * 4 3 2 6 6 N 1.28472 * 110.23095 * 359.73130 * 4 3 2 7 7 C 1.31811 * 110.06956 * 0.44868 * 6 4 3 8 8 C 1.47712 * 126.51287 * 179.82080 * 7 6 4 9 9 O 1.21578 * 119.99745 * 179.69160 * 8 7 6 10 10 N 1.34774 * 120.00282 * 359.69468 * 8 7 6 11 11 C 1.47419 * 125.64894 * 359.97131 * 10 8 7 12 12 C 1.54908 * 104.83546 * 155.90847 * 11 10 8 13 13 C 1.55155 * 101.58016 * 37.01006 * 12 11 10 14 14 H 1.09000 * 110.72258 * 83.04063 * 13 12 11 15 15 N 1.46500 * 110.72120 * 206.13686 * 13 12 11 16 16 C 1.34779 * 120.00169 * 202.55599 * 15 13 12 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46881 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00398 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99778 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46907 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47393 * 119.99621 * 24 22 20 27 27 H 1.48503 * 109.46784 * 240.00115 * 24 22 20 28 28 C 1.47325 * 125.61311 * 180.19859 * 10 8 7 29 29 H 1.09002 * 109.47491 * 269.99860 * 1 2 3 30 30 H 1.08996 * 109.47670 * 30.00134 * 1 2 3 31 31 H 1.09001 * 109.47103 * 149.99846 * 1 2 3 32 32 H 1.07999 * 126.38074 * 0.02562 * 3 2 1 33 33 H 1.09003 * 110.36766 * 37.06616 * 11 10 8 34 34 H 1.09004 * 110.46031 * 274.79242 * 11 10 8 35 35 H 1.08999 * 111.00459 * 278.93831 * 12 11 10 36 36 H 1.08997 * 111.03977 * 155.09588 * 12 11 10 37 37 H 0.96996 * 119.99986 * 22.56196 * 15 13 12 38 38 H 1.09000 * 109.47247 * 60.00371 * 18 16 15 39 39 H 1.09001 * 109.47358 * 299.99798 * 18 16 15 40 40 H 0.96996 * 120.00393 * 180.02562 * 23 22 20 41 41 H 1.08994 * 110.06333 * 61.68068 * 28 10 8 42 42 H 1.08999 * 109.84577 * 300.41205 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 0.0006 5 1 4.3886 1.1732 0.0011 6 7 3.5998 -0.6693 0.0066 7 6 2.3635 -1.1263 0.0006 8 6 1.9507 -2.5445 0.0007 9 8 0.7698 -2.8339 0.0004 10 7 2.8830 -3.5178 0.0013 11 6 4.3424 -3.3095 0.0012 12 6 4.9281 -4.6064 0.6132 13 6 3.9772 -5.6839 0.0283 14 1 4.2871 -5.9667 -0.9777 15 7 3.9253 -6.8588 0.9020 16 6 3.5525 -8.0539 0.4027 17 8 3.2605 -8.1569 -0.7699 18 6 3.4986 -9.2623 1.3016 19 16 2.9680 -10.7035 0.3437 20 6 2.9915 -11.9343 1.6044 21 1 3.2797 -11.6705 2.6112 22 6 2.6406 -13.2430 1.3032 23 7 2.2898 -13.5645 0.0760 24 14 2.6649 -14.5477 2.6398 25 1 3.0911 -13.9337 3.9231 26 1 1.3050 -15.1239 2.7939 27 1 3.6185 -15.6226 2.2651 28 6 2.6116 -4.9658 -0.0026 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.0218 2.1138 0.0004 33 1 4.6028 -2.4484 0.6166 34 1 4.7076 -3.1718 -1.0166 35 1 4.8718 -4.5850 1.7015 36 1 5.9534 -4.7679 0.2802 37 1 4.1592 -6.7765 1.8397 38 1 2.7903 -9.0823 2.1103 39 1 4.4878 -9.4486 1.7197 40 1 2.0442 -14.4790 -0.1345 41 1 2.0679 -5.2419 -0.9061 42 1 2.0307 -5.2358 0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001294702140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:57 Heat of formation + Delta-G solvation = 11.306858 kcal Electronic energy + Delta-G solvation = -25764.341073 eV Core-core repulsion = 21872.560028 eV Total energy + Delta-G solvation = -3891.781045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.07600 -40.22733 -39.03340 -37.38059 -34.17894 -33.39654 -32.41853 -31.99796 -30.82631 -29.53157 -28.05085 -27.41899 -25.49713 -24.89582 -22.87011 -21.56739 -20.89191 -20.36808 -19.46075 -18.44707 -17.86457 -17.28244 -16.94183 -16.27866 -16.04430 -15.65274 -15.26602 -14.87241 -14.79326 -14.33306 -14.04333 -13.80006 -13.60989 -13.42299 -13.23546 -13.16389 -12.96955 -12.74649 -12.51485 -12.41955 -12.19814 -12.01427 -11.61728 -11.26643 -11.06026 -11.01077 -10.90464 -10.74162 -10.23456 -9.83147 -9.79749 -9.44719 -9.26096 -9.07880 -9.01407 -8.79646 -8.22295 -6.48834 -6.20655 -3.91129 1.22222 1.70634 2.35655 2.69288 3.03240 3.08151 3.15817 3.22722 3.29554 3.34176 3.70286 3.98160 4.21087 4.24579 4.34325 4.45007 4.74309 4.83056 4.92557 5.00542 5.11439 5.14118 5.14696 5.20041 5.44752 5.51878 5.52262 5.60164 5.61839 5.67588 5.80590 5.83783 5.88838 5.92926 6.07640 6.14317 6.17470 6.53163 6.58492 7.22815 7.41378 7.60941 7.64956 7.97127 8.36557 8.56583 9.24848 10.86822 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.001872 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.075558 B =14949.954303 C =15367.344381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.144 4.144 3 C -0.020 4.020 4 N -0.384 5.384 5 H 0.447 0.553 6 N -0.257 5.257 7 C -0.006 4.006 8 C 0.615 3.385 9 O -0.525 6.525 10 N -0.606 5.606 11 C 0.105 3.895 12 C -0.141 4.141 13 C 0.138 3.862 14 H 0.107 0.893 15 N -0.730 5.730 16 C 0.533 3.467 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.096 3.904 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.184 0.816 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 41 H 0.080 0.920 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 32.862 2.554 33.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C -0.164 4.164 4 N -0.097 5.097 5 H 0.291 0.709 6 N -0.094 5.094 7 C -0.167 4.167 8 C 0.401 3.599 9 O -0.400 6.400 10 N -0.341 5.341 11 C -0.018 4.018 12 C -0.179 4.179 13 C 0.031 3.969 14 H 0.125 0.875 15 N -0.384 5.384 16 C 0.320 3.680 17 O -0.386 6.386 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.027 4.027 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.201 0.799 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.235 0.765 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.753 32.041 0.463 32.557 hybrid contribution 0.218 0.018 2.659 2.668 sum 5.971 32.059 3.122 32.759 Atomic orbital electron populations 1.20205 0.87914 1.03263 1.02569 1.20421 0.97737 0.90328 1.06942 1.22715 0.84116 1.00596 1.08968 1.43284 1.08625 1.04538 1.53259 0.70896 1.73601 1.22967 0.93647 1.19136 1.21786 0.89537 0.94797 1.10591 1.16502 0.84498 0.82017 0.76855 1.90813 1.16322 1.82332 1.50507 1.48274 1.06999 1.06211 1.72575 1.22452 0.79163 0.98395 1.01832 1.23124 0.99735 0.93619 1.01456 1.21852 0.93506 0.85002 0.96495 0.87495 1.45971 1.71629 1.07738 1.13085 1.20386 0.75459 0.83469 0.88706 1.90716 1.46210 1.84748 1.16957 1.23533 1.05324 0.98674 1.02894 1.85418 1.87575 0.96387 1.13927 1.22908 1.53133 0.95347 0.96937 0.90855 1.24995 0.94551 0.97857 0.96225 1.70023 1.42455 1.19487 1.18287 0.86114 0.77937 0.80567 0.80853 1.19624 1.20564 1.20586 1.22534 0.98130 0.78404 1.03652 0.91307 0.91863 0.89773 0.79850 0.88548 0.90929 0.89949 0.88869 0.76475 0.89101 0.89120 0.92229 0.90164 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 9.93 36.00 0.36 -0.33 16 2 C -0.14 -1.30 6.25 -104.41 -0.65 -1.96 16 3 C -0.02 -0.11 11.97 -17.17 -0.21 -0.31 16 4 N -0.38 -1.96 6.83 30.47 0.21 -1.76 16 5 H 0.45 0.49 8.96 -190.44 -1.71 -1.21 16 6 N -0.26 -2.20 9.35 33.42 0.31 -1.89 16 7 C -0.01 -0.07 6.97 -82.77 -0.58 -0.65 16 8 C 0.61 8.29 7.86 -12.39 -0.10 8.19 16 9 O -0.53 -8.63 15.44 5.30 0.08 -8.55 16 10 N -0.61 -7.18 3.33 -171.44 -0.57 -7.75 16 11 C 0.10 0.90 6.16 -2.53 -0.02 0.89 16 12 C -0.14 -1.09 6.71 -24.58 -0.16 -1.25 16 13 C 0.14 1.58 3.27 -66.09 -0.22 1.36 16 14 H 0.11 1.37 7.62 -51.93 -0.40 0.98 16 15 N -0.73 -9.28 5.12 -52.03 -0.27 -9.55 16 16 C 0.53 9.68 7.85 -10.99 -0.09 9.59 16 17 O -0.51 -11.39 15.55 5.56 0.09 -11.31 16 18 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 C 0.10 1.25 6.65 -2.89 -0.02 1.23 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 32 H 0.18 0.28 8.06 -52.49 -0.42 -0.14 16 33 H 0.10 0.77 6.19 -51.93 -0.32 0.45 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.57 8.00 -51.93 -0.42 0.15 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 3.90 8.54 -40.82 -0.35 3.55 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 39 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -38.39 370.25 -9.21 -47.60 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.88 Total: -0.47 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.26 Total: 0.97 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.42 Total: -46.46 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: 0.17 Total: -19.85 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.39 -9.21 -47.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294702140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.904 kcal (2) G-P(sol) polarization free energy of solvation -38.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds