Wall clock time and date at job start Tue Mar 31 2020 20:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35372 * 127.24590 * 2 1 4 4 N 1.35029 * 107.22933 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.88469 * 180.02562 * 4 3 2 6 6 N 1.28472 * 110.23095 * 359.73130 * 4 3 2 7 7 C 1.31811 * 110.06956 * 0.44868 * 6 4 3 8 8 C 1.47712 * 126.51287 * 179.82080 * 7 6 4 9 9 O 1.21578 * 119.99745 * 179.69160 * 8 7 6 10 10 N 1.34774 * 120.00282 * 359.69468 * 8 7 6 11 11 C 1.47419 * 125.64894 * 359.97131 * 10 8 7 12 12 C 1.54908 * 104.83546 * 155.90847 * 11 10 8 13 13 C 1.55155 * 101.58016 * 37.01006 * 12 11 10 14 14 H 1.09000 * 110.72258 * 83.04063 * 13 12 11 15 15 N 1.46500 * 110.72120 * 206.13686 * 13 12 11 16 16 C 1.34779 * 120.00169 * 202.55599 * 15 13 12 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46881 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00398 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99778 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46907 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47393 * 119.99621 * 24 22 20 27 27 H 1.48503 * 109.46784 * 240.00115 * 24 22 20 28 28 C 1.47325 * 125.61311 * 180.19859 * 10 8 7 29 29 H 1.09002 * 109.47491 * 269.99860 * 1 2 3 30 30 H 1.08996 * 109.47670 * 30.00134 * 1 2 3 31 31 H 1.09001 * 109.47103 * 149.99846 * 1 2 3 32 32 H 1.07999 * 126.38074 * 0.02562 * 3 2 1 33 33 H 1.09003 * 110.36766 * 37.06616 * 11 10 8 34 34 H 1.09004 * 110.46031 * 274.79242 * 11 10 8 35 35 H 1.08999 * 111.00459 * 278.93831 * 12 11 10 36 36 H 1.08997 * 111.03977 * 155.09588 * 12 11 10 37 37 H 0.96996 * 119.99986 * 22.56196 * 15 13 12 38 38 H 1.09000 * 109.47247 * 60.00371 * 18 16 15 39 39 H 1.09001 * 109.47358 * 299.99798 * 18 16 15 40 40 H 0.96996 * 120.00393 * 180.02562 * 23 22 20 41 41 H 1.08994 * 110.06333 * 61.68068 * 28 10 8 42 42 H 1.08999 * 109.84577 * 300.41205 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5950 0.6154 0.0006 5 1 4.3886 1.1732 0.0011 6 7 3.5998 -0.6693 0.0066 7 6 2.3635 -1.1263 0.0006 8 6 1.9507 -2.5445 0.0007 9 8 0.7698 -2.8339 0.0004 10 7 2.8830 -3.5178 0.0013 11 6 4.3424 -3.3095 0.0012 12 6 4.9281 -4.6064 0.6132 13 6 3.9772 -5.6839 0.0283 14 1 4.2871 -5.9667 -0.9777 15 7 3.9253 -6.8588 0.9020 16 6 3.5525 -8.0539 0.4027 17 8 3.2605 -8.1569 -0.7699 18 6 3.4986 -9.2623 1.3016 19 16 2.9680 -10.7035 0.3437 20 6 2.9915 -11.9343 1.6044 21 1 3.2797 -11.6705 2.6112 22 6 2.6406 -13.2430 1.3032 23 7 2.2898 -13.5645 0.0760 24 14 2.6649 -14.5477 2.6398 25 1 3.0911 -13.9337 3.9231 26 1 1.3050 -15.1239 2.7939 27 1 3.6185 -15.6226 2.2651 28 6 2.6116 -4.9658 -0.0026 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.0218 2.1138 0.0004 33 1 4.6028 -2.4484 0.6166 34 1 4.7076 -3.1718 -1.0166 35 1 4.8718 -4.5850 1.7015 36 1 5.9534 -4.7679 0.2802 37 1 4.1592 -6.7765 1.8397 38 1 2.7903 -9.0823 2.1103 39 1 4.4878 -9.4486 1.7197 40 1 2.0442 -14.4790 -0.1345 41 1 2.0679 -5.2419 -0.9061 42 1 2.0307 -5.2358 0.8793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294702140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:56 Heat of formation + Delta-G solvation = -18.442265 kcal Electronic energy + Delta-G solvation = -25765.631092 eV Core-core repulsion = 21872.560028 eV Total energy + Delta-G solvation = -3893.071064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.65311 -41.29660 -40.31185 -38.47659 -35.39938 -34.58095 -34.00521 -32.83368 -31.76859 -30.72444 -29.19496 -28.04831 -27.65248 -25.78724 -23.65653 -22.49080 -21.75989 -21.46729 -20.31008 -19.82628 -18.96601 -18.22077 -18.07435 -17.51908 -16.89374 -16.86027 -16.80599 -16.38467 -16.19224 -15.69784 -15.21351 -14.78462 -14.58637 -14.47840 -14.39476 -14.05837 -13.94519 -13.77799 -13.71189 -13.44324 -13.15778 -13.14721 -12.92265 -12.86648 -12.67500 -12.56492 -12.01414 -11.72673 -11.62324 -11.22702 -11.15625 -10.98935 -10.45309 -10.26748 -10.25480 -9.90044 -9.69867 -8.66091 -8.34445 -6.12289 0.46490 1.16679 1.25556 1.41700 1.44657 1.53050 1.58126 1.70679 2.10669 2.25981 2.27230 2.36203 2.99838 3.24247 3.31078 3.44077 3.55121 3.91213 3.96638 4.01342 4.08409 4.16378 4.28867 4.32306 4.49351 4.52210 4.55656 4.60940 4.74203 4.79768 4.88664 4.91869 4.99366 5.06369 5.17693 5.24399 5.42457 5.43015 5.51326 6.15402 6.20536 6.34581 6.46841 6.79416 7.03855 7.07054 7.21052 8.75018 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.001872 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.075558 B =14949.954303 C =15367.344381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.178 4.178 3 C 0.011 3.989 4 N -0.361 5.361 5 H 0.467 0.533 6 N -0.259 5.259 7 C -0.040 4.040 8 C 0.604 3.396 9 O -0.572 6.572 10 N -0.606 5.606 11 C 0.105 3.895 12 C -0.122 4.122 13 C 0.139 3.861 14 H 0.093 0.907 15 N -0.702 5.702 16 C 0.536 3.464 17 O -0.561 6.561 18 C -0.129 4.129 19 S -0.153 6.153 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.273 1.273 28 C 0.099 3.901 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.231 0.769 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.420 0.580 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.271 0.729 41 H 0.049 0.951 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.336 35.662 4.929 36.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.189 4.189 3 C -0.134 4.134 4 N -0.078 5.078 5 H 0.316 0.684 6 N -0.098 5.098 7 C -0.199 4.199 8 C 0.393 3.607 9 O -0.450 6.450 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.160 4.160 13 C 0.033 3.967 14 H 0.112 0.888 15 N -0.356 5.356 16 C 0.323 3.677 17 O -0.439 6.439 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.692 4.692 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.199 1.199 28 C -0.026 4.026 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.247 0.753 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.258 0.742 38 H 0.127 0.873 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.225 34.897 2.881 35.969 hybrid contribution -0.488 -0.627 1.902 2.061 sum 7.737 34.270 4.783 35.457 Atomic orbital electron populations 1.20126 0.88233 1.02861 1.02308 1.20683 0.98173 0.91045 1.08964 1.23264 0.83098 1.01545 1.05459 1.43435 1.09755 1.03727 1.50873 0.68422 1.73494 1.21722 0.95262 1.19285 1.21529 0.91088 0.93723 1.13538 1.17044 0.84141 0.83457 0.76075 1.90773 1.18215 1.83301 1.52670 1.48370 1.08437 1.05252 1.71888 1.22653 0.76950 0.99363 1.02707 1.23144 0.99789 0.90733 1.02345 1.21898 0.93657 0.84985 0.96147 0.88845 1.45654 1.69409 1.06342 1.14216 1.20132 0.75403 0.84502 0.87708 1.90710 1.48723 1.85561 1.18857 1.23373 1.06696 0.95836 1.02158 1.85614 1.88617 1.00855 1.17532 1.23243 1.53043 0.95799 0.97159 0.89798 1.26142 0.93812 1.00513 0.98832 1.70189 1.43623 1.20192 1.20826 0.84895 0.78100 0.77071 0.77809 1.17941 1.20098 1.19869 1.22350 0.98748 0.79917 1.01574 0.91556 0.89124 0.93228 0.75290 0.87225 0.90271 0.88104 0.86169 0.74155 0.87286 0.86670 0.92023 0.93266 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.93 71.23 0.71 -0.60 16 2 C -0.18 -3.03 6.25 -19.73 -0.12 -3.15 16 3 C 0.01 0.08 11.97 83.54 1.00 1.08 16 4 N -0.36 -2.41 6.83 -57.51 -0.39 -2.80 16 5 H 0.47 -1.00 8.96 -219.99 -1.97 -2.97 16 6 N -0.26 -3.88 9.35 -48.18 -0.45 -4.33 16 7 C -0.04 -0.87 6.97 42.46 0.30 -0.57 16 8 C 0.60 17.14 7.86 86.75 0.68 17.82 16 9 O -0.57 -20.50 15.44 -3.96 -0.06 -20.56 16 10 N -0.61 -14.66 3.33 -814.57 -2.71 -17.37 16 11 C 0.11 1.62 6.16 86.86 0.53 2.16 16 12 C -0.12 -1.53 6.71 31.99 0.21 -1.31 16 13 C 0.14 3.09 3.27 46.18 0.15 3.24 16 14 H 0.09 2.42 7.62 -2.39 -0.02 2.40 16 15 N -0.70 -16.93 5.12 -436.91 -2.24 -19.17 16 16 C 0.54 19.46 7.85 87.66 0.69 20.15 16 17 O -0.56 -25.90 15.55 -3.04 -0.05 -25.95 16 18 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 19 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 20 C -0.54 -31.24 9.50 67.95 0.65 -30.60 16 21 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.67 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.57 13.22 21.65 0.29 -56.28 16 24 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 28 C 0.10 2.69 6.65 86.67 0.58 3.26 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.18 6.72 -2.39 -0.02 1.16 16 32 H 0.23 -0.59 8.06 -2.91 -0.02 -0.61 16 33 H 0.11 1.47 6.19 -2.39 -0.01 1.45 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 0.97 8.00 -2.39 -0.02 0.95 16 36 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 6.99 8.54 -92.71 -0.79 6.20 16 38 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 39 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.89 8.03 -2.39 -0.02 1.87 16 Total: -1.00 -90.73 370.25 -0.16 -90.88 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -1.68 Total: 11.32 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 6.28 Total: 7.99 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -5.51 Total: -99.95 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -0.11 Total: -46.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -90.73 -0.16 -90.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294702140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.441 kcal (2) G-P(sol) polarization free energy of solvation -90.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds