Wall clock time and date at job start Tue Mar 31 2020 20:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30854 * 125.41668 * 2 1 4 4 C 1.33326 * 109.68264 * 179.78354 * 3 2 1 5 5 C 1.36659 * 107.78626 * 0.37202 * 4 3 2 6 6 C 1.46764 * 126.84523 * 179.89075 * 5 4 3 7 7 O 1.21688 * 119.99819 * 5.25184 * 6 5 4 8 8 N 1.34779 * 120.00299 * 185.24454 * 6 5 4 9 9 C 1.47422 * 125.64935 * 175.17585 * 8 6 5 10 10 C 1.55118 * 104.94259 * 204.03976 * 9 8 6 11 11 C 1.55157 * 101.48844 * 323.22876 * 10 9 8 12 12 H 1.08997 * 110.71470 * 276.82711 * 11 10 9 13 13 N 1.46498 * 110.72109 * 153.73250 * 11 10 9 14 14 C 1.34776 * 119.99785 * 157.43441 * 13 11 10 15 15 O 1.21287 * 120.00101 * 0.02562 * 14 13 11 16 16 C 1.50705 * 119.99689 * 179.97438 * 14 13 11 17 17 S 1.81007 * 109.46812 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99742 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00096 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99504 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99419 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00433 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47183 * 89.99987 * 22 20 18 24 24 H 1.48495 * 109.47251 * 330.00125 * 22 20 18 25 25 H 1.48499 * 109.47192 * 210.00138 * 22 20 18 26 26 C 1.47023 * 125.64483 * 355.22264 * 8 6 5 27 27 N 1.34495 * 125.41665 * 180.02562 * 2 1 3 28 28 H 0.97001 * 126.47547 * 359.96550 * 27 2 1 29 29 H 1.08999 * 109.46831 * 269.97581 * 1 2 3 30 30 H 1.08995 * 109.46558 * 29.97993 * 1 2 3 31 31 H 1.08997 * 109.46848 * 149.97980 * 1 2 3 32 32 H 1.07999 * 126.10365 * 180.27527 * 4 3 2 33 33 H 1.09001 * 110.36949 * 323.00789 * 9 8 6 34 34 H 1.09003 * 110.36205 * 85.22117 * 9 8 6 35 35 H 1.08997 * 111.16307 * 205.12944 * 10 9 8 36 36 H 1.09000 * 110.93270 * 81.21803 * 10 9 8 37 37 H 0.96997 * 119.99861 * 337.43929 * 13 11 10 38 38 H 1.08994 * 109.47058 * 60.00675 * 16 14 13 39 39 H 1.08997 * 109.47293 * 299.99892 * 16 14 13 40 40 H 0.97006 * 120.00005 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.87925 * 59.48556 * 26 8 6 42 42 H 1.08994 * 110.00866 * 298.39214 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0047 5 6 3.5976 -0.6608 -0.0006 6 6 4.8029 -1.4983 -0.0004 7 8 5.9011 -0.9840 0.1014 8 7 4.6935 -2.8369 -0.1127 9 6 5.8172 -3.7843 -0.2270 10 6 5.2195 -5.0309 -0.9303 11 6 3.7984 -5.0842 -0.3097 12 1 3.8185 -5.5871 0.6571 13 7 2.8607 -5.7487 -1.2181 14 6 1.7320 -6.3036 -0.7338 15 8 1.4924 -6.2523 0.4541 16 6 0.7670 -6.9867 -1.6683 17 16 -0.6391 -7.6242 -0.7234 18 6 -1.5783 -8.3508 -2.0252 19 1 -1.2164 -8.3067 -3.0418 20 6 -2.7836 -8.9790 -1.7441 21 7 -3.4850 -9.5222 -2.7166 22 14 -3.4098 -9.0547 0.0141 23 1 -4.2512 -7.8630 0.2917 24 1 -2.2569 -9.0753 0.9497 25 1 -4.2192 -10.2859 0.1987 26 6 3.4336 -3.5941 -0.1426 27 7 2.2865 -1.0961 -0.0005 28 1 1.9850 -2.0181 -0.0004 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3632 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 4.3978 1.3722 0.0101 33 1 6.6165 -3.3538 -0.8304 34 1 6.1907 -4.0507 0.7618 35 1 5.7861 -5.9296 -0.6869 36 1 5.1693 -4.8828 -2.0091 37 1 3.0522 -5.7895 -2.1681 38 1 1.2710 -7.8118 -2.1715 39 1 0.4115 -6.2715 -2.4100 40 1 -4.3276 -9.9610 -2.5203 41 1 2.8233 -3.2652 -0.9838 42 1 2.8886 -3.4482 0.7900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001294702363.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:14 Heat of formation + Delta-G solvation = -31.487993 kcal Electronic energy + Delta-G solvation = -26305.449249 eV Core-core repulsion = 22411.812480 eV Total energy + Delta-G solvation = -3893.636769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.42079 -41.36156 -40.39493 -38.59145 -35.43966 -34.65886 -34.06782 -33.04261 -32.13362 -30.90833 -29.23910 -28.48060 -27.82980 -25.42014 -23.20793 -22.78931 -21.92343 -21.77834 -21.02101 -19.88631 -18.92623 -18.19014 -17.84405 -17.50482 -17.11499 -16.90342 -16.80888 -16.44219 -16.20372 -15.67548 -15.27500 -15.06118 -14.90835 -14.70572 -14.69125 -14.37368 -14.09205 -13.86785 -13.58078 -13.46247 -13.33719 -13.29811 -13.05482 -12.99222 -12.79176 -12.59422 -11.98693 -11.86341 -11.72794 -11.34227 -11.21322 -11.16027 -11.04898 -10.51784 -10.33834 -10.07318 -9.57089 -8.97435 -8.50532 -6.20821 0.09673 0.99393 1.32432 1.41344 1.47638 1.52303 1.60894 1.62078 1.85517 2.10484 2.21951 2.26039 2.71569 2.88302 3.12635 3.29045 3.36440 3.54891 3.83086 3.85439 3.94779 4.03320 4.15925 4.21298 4.24573 4.27734 4.48586 4.50971 4.62091 4.67434 4.70298 4.76966 4.83529 4.97026 5.04446 5.10455 5.33307 5.40070 5.71595 6.05372 6.11857 6.13311 6.39205 6.73109 6.81924 6.95030 7.12529 8.61805 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.002736 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.138500 B =10230.558507 C =11806.828615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.245 3.755 3 N -0.524 5.524 4 C 0.063 3.937 5 C -0.106 4.106 6 C 0.613 3.387 7 O -0.558 6.558 8 N -0.614 5.614 9 C 0.104 3.896 10 C -0.122 4.122 11 C 0.142 3.858 12 H 0.102 0.898 13 N -0.702 5.702 14 C 0.541 3.459 15 O -0.553 6.553 16 C -0.114 4.114 17 S -0.172 6.172 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.919 5.919 22 Si 0.914 3.086 23 H -0.261 1.261 24 H -0.234 1.234 25 H -0.264 1.264 26 C 0.075 3.925 27 N -0.547 5.547 28 H 0.430 0.570 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.190 0.810 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.421 0.579 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.276 0.724 41 H 0.081 0.919 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 13.820 2.978 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 N -0.244 5.244 4 C -0.092 4.092 5 C -0.221 4.221 6 C 0.403 3.597 7 O -0.437 6.437 8 N -0.347 5.347 9 C -0.018 4.018 10 C -0.160 4.160 11 C 0.036 3.964 12 H 0.120 0.880 13 N -0.356 5.356 14 C 0.327 3.673 15 O -0.430 6.430 16 C -0.265 4.265 17 S 0.055 5.945 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.161 4.161 21 N -0.557 5.557 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.158 1.158 25 H -0.189 1.189 26 C -0.050 4.050 27 N -0.157 5.157 28 H 0.275 0.725 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.207 0.793 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.260 0.740 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.173 14.911 4.925 22.543 hybrid contribution -0.215 -1.515 -1.457 2.113 sum 15.958 13.396 3.468 21.122 Atomic orbital electron populations 1.20557 0.81599 1.05976 1.05527 1.24224 0.97334 0.81165 0.99186 1.70237 1.02312 1.29400 1.22500 1.22888 0.95227 0.91546 0.99516 1.20972 0.84228 0.95765 1.21165 1.16519 0.86754 0.80319 0.76144 1.90837 1.27385 1.73037 1.52415 1.48288 1.09321 1.04782 1.72311 1.22484 0.89233 0.87995 1.02052 1.23154 0.92679 0.98534 1.01622 1.21861 0.89355 0.89496 0.95716 0.88026 1.45664 1.20453 1.57185 1.12329 1.19952 0.81785 0.77476 0.88108 1.90723 1.75457 1.59209 1.17636 1.23290 0.97504 1.04135 1.01594 1.84692 1.22106 1.72672 1.15039 1.22478 1.08780 1.41616 0.94683 0.91942 1.25577 0.95722 0.93350 1.01458 1.70022 1.15039 1.36583 1.34060 0.85873 0.80801 0.79122 0.80625 1.18601 1.15784 1.18866 1.22733 0.86661 0.93436 1.02143 1.43837 1.05420 1.11194 1.55244 0.72492 0.88080 0.87784 0.88558 0.79340 0.89318 0.89980 0.86227 0.88010 0.74048 0.86728 0.86593 0.91452 0.90115 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.51 71.24 0.75 -0.16 16 2 C 0.24 4.64 8.12 138.20 1.12 5.76 16 3 N -0.52 -12.42 11.20 -187.39 -2.10 -14.52 16 4 C 0.06 1.46 11.66 84.10 0.98 2.45 16 5 C -0.11 -2.32 6.89 40.01 0.28 -2.05 16 6 C 0.61 13.98 7.81 86.47 0.68 14.66 16 7 O -0.56 -15.98 17.20 -4.31 -0.07 -16.05 16 8 N -0.61 -10.28 3.33 -815.97 -2.72 -13.00 16 9 C 0.10 1.23 6.89 86.93 0.60 1.83 16 10 C -0.12 -0.88 6.73 32.06 0.22 -0.66 16 11 C 0.14 1.85 3.27 46.18 0.15 2.00 16 12 H 0.10 1.67 7.62 -2.39 -0.02 1.65 16 13 N -0.70 -10.47 5.12 -436.92 -2.24 -12.70 16 14 C 0.54 14.09 7.85 87.66 0.69 14.78 16 15 O -0.55 -18.87 15.55 -3.05 -0.05 -18.92 16 16 C -0.11 -3.55 6.16 71.24 0.44 -3.11 16 17 S -0.17 -7.79 18.55 -56.49 -1.05 -8.84 16 18 C -0.53 -28.77 10.04 67.95 0.68 -28.09 16 19 H 0.06 3.60 8.03 -2.91 -0.02 3.58 16 20 C 0.04 2.47 5.50 84.86 0.47 2.94 16 21 N -0.92 -54.02 13.97 21.65 0.30 -53.71 16 22 Si 0.91 42.64 27.74 68.60 1.90 44.54 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.23 -10.78 6.74 99.48 0.67 -10.11 16 25 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 26 C 0.07 1.08 4.89 86.73 0.42 1.50 16 27 N -0.55 -9.86 5.65 -176.11 -1.00 -10.85 16 28 H 0.43 6.31 5.18 -92.71 -0.48 5.83 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.10 0.49 8.00 -2.39 -0.02 0.47 16 37 H 0.42 3.77 8.54 -92.71 -0.79 2.98 16 38 H 0.11 3.26 8.14 -2.40 -0.02 3.24 16 39 H 0.12 3.22 8.14 -2.40 -0.02 3.20 16 40 H 0.28 15.05 8.31 -92.70 -0.77 14.28 16 41 H 0.08 1.07 6.91 -2.38 -0.02 1.05 16 42 H 0.07 1.16 7.35 -2.39 -0.02 1.14 16 Total: -1.00 -78.08 368.65 0.23 -77.86 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.23 Total: 14.33 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.47 Total: 11.87 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -7.74 Total: -104.79 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.12 Total: -34.97 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.90 Total: 44.54 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.05 Total: -8.84 kcal Total: -78.08 0.23 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001294702363.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -78.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds