Wall clock time and date at job start Tue Mar 31 2020 20:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35040 * 126.38443 * 2 1 4 4 H 0.96998 * 124.88404 * 0.27012 * 3 2 1 5 5 N 1.28463 * 110.22823 * 180.26575 * 3 2 1 6 6 C 1.31805 * 110.07908 * 0.02562 * 5 3 2 7 7 C 1.47709 * 126.52289 * 179.97438 * 6 5 3 8 8 O 1.21571 * 120.00150 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99690 * 359.97438 * 7 6 5 10 10 C 1.47057 * 136.06031 * 359.63632 * 9 7 6 11 11 C 1.53754 * 87.89317 * 152.95721 * 10 9 7 12 12 N 1.46493 * 114.39677 * 272.67674 * 11 10 9 13 13 C 1.34777 * 120.00096 * 248.58244 * 12 11 10 14 14 O 1.21281 * 119.99802 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00132 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47048 * 180.02562 * 15 13 12 17 17 C 1.76196 * 100.00095 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00064 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00239 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99931 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47185 * 90.00090 * 21 19 17 23 23 H 1.48501 * 109.46811 * 209.99746 * 21 19 17 24 24 H 1.48496 * 109.47073 * 329.99718 * 21 19 17 25 25 C 1.47071 * 136.05212 * 179.97438 * 9 7 6 26 26 C 1.35365 * 126.38746 * 180.32150 * 2 1 3 27 27 C 1.50698 * 127.24328 * 359.71001 * 26 2 1 28 28 H 1.09006 * 109.47021 * 269.68450 * 1 2 3 29 29 H 1.08997 * 109.47445 * 29.68077 * 1 2 3 30 30 H 1.08994 * 109.47366 * 149.68495 * 1 2 3 31 31 H 1.09008 * 113.46667 * 267.69018 * 10 9 7 32 32 H 1.09002 * 113.47316 * 38.12287 * 10 9 7 33 33 H 1.08996 * 114.27021 * 139.78440 * 11 10 9 34 34 H 0.97006 * 120.00264 * 68.57986 * 12 11 10 35 35 H 1.09001 * 109.47264 * 299.99411 * 15 13 12 36 36 H 1.08994 * 109.47142 * 60.00284 * 15 13 12 37 37 H 0.96997 * 119.99981 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.47290 * 321.86887 * 25 9 7 39 39 H 1.08999 * 113.46786 * 92.31294 * 25 9 7 40 40 H 1.09004 * 109.47076 * 90.03111 * 27 26 2 41 41 H 1.09004 * 109.46864 * 210.02451 * 27 26 2 42 42 H 1.08997 * 109.47314 * 330.02366 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 0.0038 5 7 3.5419 0.7297 -0.0056 6 6 3.6321 -0.5853 -0.0101 7 6 4.8765 -1.3811 -0.0177 8 8 4.8214 -2.5955 -0.0208 9 7 6.0730 -0.7608 -0.0211 10 6 6.5434 0.6325 -0.0257 11 6 7.8229 0.1432 0.6725 12 7 7.7321 0.0895 2.1336 13 6 8.4507 0.9468 2.8854 14 8 9.1721 1.7630 2.3522 15 6 8.3569 0.8919 4.3885 16 16 9.4307 2.1598 5.1067 17 6 9.1332 1.8779 6.8203 18 1 8.4510 1.0996 7.1291 19 6 9.7763 2.6554 7.7735 20 7 10.6080 3.6036 7.3972 21 14 9.4613 2.3561 9.5903 22 1 10.4365 1.3611 10.1044 23 1 9.6153 3.6310 10.3359 24 1 8.0819 1.8383 9.7747 25 6 7.4828 -1.1796 -0.0278 26 6 2.3100 -1.0897 -0.0061 27 6 1.8853 -2.5356 -0.0082 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3634 0.8928 -0.5088 30 1 -0.3634 -0.8871 -0.5187 31 1 6.7191 1.0281 -1.0262 32 1 5.9379 1.2973 0.5905 33 1 8.7374 0.6161 0.3147 34 1 7.1548 -0.5631 2.5601 35 1 7.3267 1.0728 4.6952 36 1 8.6724 -0.0916 4.7366 37 1 11.0577 4.1467 8.0632 38 1 7.6775 -2.0585 0.5866 39 1 7.9063 -1.2621 -1.0288 40 1 1.7793 -2.8817 -1.0363 41 1 2.6388 -3.1363 0.5015 42 1 0.9310 -2.6347 0.5089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297003069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:41 Heat of formation + Delta-G solvation = 39.660571 kcal Electronic energy + Delta-G solvation = -25915.129242 eV Core-core repulsion = 22024.577707 eV Total energy + Delta-G solvation = -3890.551536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.04374 -40.73372 -38.89640 -37.70971 -33.91589 -33.48808 -32.80152 -32.43533 -30.20387 -28.96044 -28.08305 -26.46289 -26.26453 -25.49778 -24.13689 -21.67497 -20.48765 -20.32989 -18.98306 -17.95768 -17.88564 -17.03824 -16.68818 -16.27610 -16.04772 -15.94271 -15.24802 -14.90547 -14.80758 -14.24679 -14.06753 -13.68184 -13.55416 -13.34013 -13.23311 -13.20202 -13.05528 -13.00005 -12.68242 -12.53755 -12.38175 -12.11725 -11.90783 -11.24377 -11.06730 -11.03112 -10.97089 -10.77182 -10.17098 -9.82982 -9.66316 -9.51599 -9.08737 -9.05429 -8.99498 -8.86860 -8.25470 -6.51006 -6.22479 -3.92976 1.29509 1.71634 2.38641 2.68060 2.93684 2.97666 3.18755 3.22223 3.27105 3.30975 3.64433 3.97155 4.19706 4.22396 4.27380 4.49402 4.66951 4.79773 4.92924 5.00287 5.05989 5.12525 5.12893 5.16572 5.32851 5.37220 5.38010 5.44205 5.53194 5.54222 5.59368 5.77446 5.82410 5.87394 5.88144 6.13444 6.21625 6.56392 6.64116 7.41198 7.50442 7.59196 7.63902 7.97165 8.34755 8.53361 9.23081 10.84952 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002331 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.251064 B =12011.660532 C =13010.313591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.007 3.993 3 N -0.379 5.379 4 H 0.445 0.555 5 N -0.248 5.248 6 C -0.008 4.008 7 C 0.632 3.368 8 O -0.531 6.531 9 N -0.636 5.636 10 C 0.090 3.910 11 C 0.111 3.889 12 N -0.717 5.717 13 C 0.538 3.462 14 O -0.514 6.514 15 C -0.154 4.154 16 S -0.058 6.058 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.098 3.902 26 C -0.145 4.145 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.624 -8.560 -18.598 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 N -0.094 5.094 4 H 0.290 0.710 5 N -0.084 5.084 6 C -0.169 4.169 7 C 0.421 3.579 8 O -0.406 6.406 9 N -0.372 5.372 10 C -0.034 4.034 11 C 0.004 3.996 12 N -0.370 5.370 13 C 0.324 3.676 14 O -0.387 6.387 15 C -0.304 4.304 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.025 4.025 26 C -0.155 4.155 27 C -0.136 4.136 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.147 0.853 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.852 -6.894 -19.413 27.260 hybrid contribution -2.046 -1.428 1.898 3.135 sum -19.898 -8.322 -17.515 27.784 Atomic orbital electron populations 1.20345 0.86489 1.03909 1.03467 1.21227 0.95298 0.86860 1.08419 1.43250 1.03003 1.09566 1.53548 0.70987 1.73620 1.01443 1.14860 1.18520 1.21660 0.94368 0.89708 1.11123 1.16319 0.79968 0.85677 0.75954 1.90785 1.85916 1.12619 1.51268 1.49455 1.04616 1.10504 1.72588 1.23700 0.93841 0.84480 1.01379 1.22156 0.99243 0.96488 0.81750 1.45615 1.48175 1.38530 1.04682 1.20342 0.78477 0.79692 0.89050 1.90702 1.38068 1.36064 1.73898 1.23534 1.06488 1.07126 0.93284 1.85364 1.54919 1.40242 1.02632 1.22868 1.31770 1.22616 0.91121 0.90928 1.24990 0.94515 0.94460 0.99612 1.70012 1.26514 1.19267 1.34498 0.86166 0.78753 0.77845 0.82735 1.20241 1.20757 1.19708 1.23444 0.78871 0.98771 1.01424 1.20099 0.90494 0.96714 1.08219 1.20185 1.01476 0.89679 1.02273 0.90201 0.91047 0.89525 0.88697 0.89030 0.85333 0.76437 0.89205 0.89062 0.92178 0.89543 0.88137 0.91520 0.89880 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.14 36.01 0.37 0.04 16 2 C 0.01 0.06 7.23 -82.21 -0.59 -0.54 16 3 N -0.38 -3.00 6.83 33.50 0.23 -2.77 16 4 H 0.45 1.96 8.96 -190.45 -1.71 0.25 16 5 N -0.25 -2.74 10.76 33.42 0.36 -2.38 16 6 C -0.01 -0.10 7.10 -82.77 -0.59 -0.69 16 7 C 0.63 8.49 8.08 -12.39 -0.10 8.39 16 8 O -0.53 -8.25 15.89 5.30 0.08 -8.17 16 9 N -0.64 -7.22 3.69 -186.26 -0.69 -7.90 16 10 C 0.09 0.93 7.63 -8.38 -0.06 0.86 16 11 C 0.11 1.21 4.61 -67.69 -0.31 0.90 16 12 N -0.72 -9.51 5.40 -53.50 -0.29 -9.79 16 13 C 0.54 9.69 7.85 -10.98 -0.09 9.60 16 14 O -0.51 -11.05 15.45 5.56 0.09 -10.96 16 15 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 16 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 17 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 21 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.10 0.91 8.38 -8.51 -0.07 0.84 16 26 C -0.15 -1.51 6.25 -104.40 -0.65 -2.17 16 27 C -0.08 -0.70 9.60 36.00 0.35 -0.36 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.28 7.98 -51.93 -0.41 -0.13 16 31 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.09 1.08 7.48 -51.93 -0.39 0.69 16 33 H 0.13 1.43 7.45 -51.93 -0.39 1.04 16 34 H 0.40 4.77 8.76 -40.82 -0.36 4.41 16 35 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 42 H 0.06 0.42 8.00 -51.93 -0.42 0.00 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -37.51 377.31 -9.31 -46.82 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.94 Total: 1.07 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.34 Total: 1.10 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.35 Total: -48.17 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.51 -9.31 -46.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297003069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.483 kcal (2) G-P(sol) polarization free energy of solvation -37.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds