Wall clock time and date at job start Tue Mar 31 2020 20:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30849 * 125.41832 * 2 1 4 4 C 1.33323 * 109.68632 * 180.02562 * 3 2 1 5 5 C 1.36658 * 107.78281 * 359.97438 * 4 3 2 6 6 C 1.46773 * 126.84257 * 179.97438 * 5 4 3 7 7 O 1.21680 * 119.99775 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00047 * 180.02562 * 6 5 4 9 9 C 1.47573 * 134.49155 * 179.97438 * 8 6 5 10 10 C 1.53951 * 86.11431 * 155.35928 * 9 8 6 11 11 C 1.53006 * 113.73859 * 137.95204 * 10 9 8 12 12 N 1.46500 * 109.46998 * 175.00041 * 11 10 9 13 13 C 1.34769 * 120.00237 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00461 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47558 * 179.97438 * 15 13 12 17 17 C 1.76195 * 99.99992 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99680 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47183 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47428 * 119.99945 * 21 19 17 24 24 H 1.48498 * 109.47293 * 239.99993 * 21 19 17 25 25 C 1.47579 * 134.48858 * 0.02562 * 8 6 5 26 26 N 1.34496 * 125.41916 * 180.31471 * 2 1 3 27 27 H 0.97003 * 126.47142 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.46745 * 89.97821 * 1 2 3 29 29 H 1.09004 * 109.46748 * 209.97722 * 1 2 3 30 30 H 1.08994 * 109.46901 * 329.97283 * 1 2 3 31 31 H 1.07998 * 126.10972 * 179.97438 * 4 3 2 32 32 H 1.09005 * 113.77258 * 41.06101 * 9 8 6 33 33 H 1.08997 * 113.77222 * 269.65496 * 9 8 6 34 34 H 1.08994 * 113.74210 * 269.15079 * 10 9 8 35 35 H 1.08993 * 109.46955 * 295.00267 * 11 10 9 36 36 H 1.09000 * 109.47050 * 55.00096 * 11 10 9 37 37 H 0.97010 * 119.99909 * 359.97438 * 12 11 10 38 38 H 1.08996 * 109.47077 * 300.00146 * 15 13 12 39 39 H 1.09004 * 109.46818 * 59.99313 * 15 13 12 40 40 H 0.97009 * 119.99708 * 179.97438 * 20 19 17 41 41 H 1.08992 * 113.77228 * 90.34051 * 25 8 6 42 42 H 1.08999 * 113.77438 * 318.93837 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.9038 -0.9800 -0.0020 8 7 4.6903 -2.8414 -0.0015 9 6 5.6530 -3.9599 -0.0028 10 6 4.5275 -4.7917 0.6387 11 6 4.4082 -6.2077 0.0714 12 7 3.3954 -6.9517 0.8245 13 6 3.1186 -8.2301 0.5002 14 8 3.7077 -8.7647 -0.4153 15 6 2.0764 -8.9953 1.2745 16 16 1.9353 -10.6705 0.6037 17 6 0.6870 -11.3204 1.6638 18 1 0.2613 -10.7013 2.4396 19 6 0.2507 -12.6280 1.5018 20 7 0.7692 -13.3824 0.5558 21 14 -1.0732 -13.3169 2.6251 22 1 -1.4884 -12.2747 3.5981 23 1 -2.2452 -13.7315 1.8129 24 1 -0.5381 -14.4924 3.3579 25 6 3.5548 -3.7840 -0.0014 26 7 2.2865 -1.0960 -0.0060 27 1 1.9850 -2.0180 -0.0107 28 1 -0.3632 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 4.3979 1.3721 -0.0011 32 1 6.5105 -3.8024 0.6515 33 1 5.9339 -4.2966 -1.0007 34 1 4.5319 -4.7695 1.7284 35 1 4.1157 -6.1556 -0.9772 36 1 5.3692 -6.7151 0.1558 37 1 2.9245 -6.5242 1.5571 38 1 2.3682 -9.0470 2.3234 39 1 1.1154 -8.4880 1.1894 40 1 0.4645 -14.2964 0.4428 41 1 3.2203 -4.0691 -0.9987 42 1 2.7365 -3.4861 0.6541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297165802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:00 Heat of formation + Delta-G solvation = 20.751986 kcal Electronic energy + Delta-G solvation = -25222.808360 eV Core-core repulsion = 21331.436886 eV Total energy + Delta-G solvation = -3891.371473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.73808 -40.80767 -39.22788 -38.19114 -34.68687 -33.34073 -32.49717 -32.45143 -31.12182 -29.37516 -27.88474 -26.99919 -25.98483 -25.44686 -22.96005 -21.51601 -21.19044 -20.52770 -20.10663 -18.38694 -17.92376 -17.08963 -16.78122 -16.45152 -16.18883 -16.11124 -15.47404 -15.28155 -14.86863 -14.62782 -14.30896 -14.20910 -13.91556 -13.76136 -13.57505 -13.28981 -13.22195 -13.10740 -12.98379 -12.74989 -12.53999 -11.97155 -11.87350 -11.43831 -11.12758 -11.09234 -10.86512 -10.81816 -10.68327 -10.41201 -9.88001 -9.56489 -9.40150 -9.15389 -9.07131 -8.93578 -8.31669 -6.58085 -6.28671 -3.99815 0.79477 2.07171 2.30582 2.36355 2.85082 2.90742 2.95458 3.16336 3.21482 3.25984 3.48884 3.73882 3.76172 3.94693 4.13464 4.21662 4.30217 4.46282 4.57791 4.61931 4.75870 4.81005 4.92325 4.95397 5.03095 5.06805 5.07591 5.18434 5.29406 5.32508 5.38768 5.44021 5.55330 5.71503 5.78107 6.03128 6.06856 6.40967 6.64653 7.00016 7.40601 7.51327 7.53530 7.58215 8.28326 8.45904 9.16930 10.78739 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.001879 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.562974 B =14899.239330 C =16280.258846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.240 3.760 3 N -0.495 5.495 4 C 0.075 3.925 5 C -0.090 4.090 6 C 0.619 3.381 7 O -0.523 6.523 8 N -0.648 5.648 9 C 0.122 3.878 10 C -0.129 4.129 11 C 0.130 3.870 12 N -0.740 5.740 13 C 0.532 3.468 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.093 3.907 26 N -0.553 5.553 27 H 0.420 0.580 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.098 0.902 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 25.215 0.664 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.023 4.023 3 N -0.215 5.215 4 C -0.079 4.079 5 C -0.205 4.205 6 C 0.409 3.591 7 O -0.399 6.399 8 N -0.384 5.384 9 C 0.000 4.000 10 C -0.149 4.149 11 C 0.005 3.995 12 N -0.395 5.395 13 C 0.318 3.682 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.030 4.030 26 N -0.160 5.160 27 H 0.261 0.739 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.202 0.798 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.232 0.768 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.319 25.456 -0.976 25.690 hybrid contribution -1.648 -0.932 2.088 2.819 sum 1.671 24.524 1.112 24.606 Atomic orbital electron populations 1.20356 0.83972 1.04819 1.04344 1.23569 0.96056 0.81537 1.01159 1.70237 1.02050 1.28195 1.21063 1.22699 0.94868 0.91077 0.99296 1.21046 0.83561 0.95781 1.20112 1.16455 0.87056 0.79466 0.76089 1.90875 1.26129 1.72020 1.50872 1.49865 1.11006 1.03420 1.74083 1.23172 0.93927 0.81164 1.01748 1.23413 0.96014 0.93473 1.01954 1.21218 0.93343 0.88928 0.96018 1.45985 1.42528 1.13501 1.37536 1.20334 0.83148 0.80810 0.83902 1.90720 1.50701 1.67934 1.29504 1.23530 0.99409 1.04448 1.03053 1.85427 1.52248 1.00273 1.45431 1.22892 1.24790 1.00678 1.20053 0.90867 1.25004 0.96971 0.95851 0.95809 1.70026 1.41171 1.08375 1.30621 0.86109 0.80530 0.78883 0.79921 1.19629 1.20539 1.20537 1.23558 0.91250 0.86677 1.01516 1.43546 1.06088 1.10440 1.55975 0.73878 0.89338 0.90205 0.88435 0.79783 0.88986 0.88667 0.86847 0.90890 0.90493 0.76809 0.89178 0.89232 0.92179 0.88409 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.24 1.78 8.12 -155.62 -1.26 0.51 16 3 N -0.50 -5.03 11.20 -10.58 -0.12 -5.15 16 4 C 0.07 0.76 11.66 -17.48 -0.20 0.55 16 5 C -0.09 -0.84 7.02 -82.14 -0.58 -1.42 16 6 C 0.62 6.51 8.02 -12.81 -0.10 6.41 16 7 O -0.52 -7.28 17.63 5.21 0.09 -7.19 16 8 N -0.65 -4.92 3.61 -179.88 -0.65 -5.57 16 9 C 0.12 0.76 8.40 -2.98 -0.03 0.73 16 10 C -0.13 -0.66 3.95 -89.67 -0.35 -1.01 16 11 C 0.13 1.04 5.53 -4.04 -0.02 1.01 16 12 N -0.74 -7.51 5.56 -60.29 -0.33 -7.85 16 13 C 0.53 8.69 7.85 -10.99 -0.09 8.60 16 14 O -0.51 -10.67 15.86 5.56 0.09 -10.58 16 15 C -0.15 -2.81 6.16 36.01 0.22 -2.59 16 16 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 17 C -0.54 -14.70 9.50 30.94 0.29 -14.40 16 18 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 19 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 20 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 21 Si 0.92 20.75 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 C 0.09 0.43 6.98 -2.96 -0.02 0.41 16 26 N -0.55 -3.69 5.95 -7.02 -0.04 -3.73 16 27 H 0.42 1.68 5.96 -40.82 -0.24 1.43 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.53 8.10 -51.93 -0.42 0.10 16 34 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.40 2.82 8.47 -40.82 -0.35 2.48 16 38 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 39 H 0.09 1.48 8.14 -51.91 -0.42 1.06 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.10 0.40 7.89 -51.93 -0.41 -0.01 16 42 H 0.08 0.23 6.55 -51.93 -0.34 -0.11 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -38.45 377.76 -9.14 -47.60 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.52 Total: -1.30 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.86 Total: 0.84 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.41 Total: -47.02 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.45 -9.14 -47.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297165802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.350 kcal (2) G-P(sol) polarization free energy of solvation -38.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds