Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30849 * 125.41832 * 2 1 4 4 C 1.33323 * 109.68632 * 180.02562 * 3 2 1 5 5 C 1.36658 * 107.78281 * 359.97438 * 4 3 2 6 6 C 1.46773 * 126.84257 * 179.97438 * 5 4 3 7 7 O 1.21680 * 119.99775 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00047 * 180.02562 * 6 5 4 9 9 C 1.47573 * 134.49155 * 179.97438 * 8 6 5 10 10 C 1.53951 * 86.11431 * 155.35928 * 9 8 6 11 11 C 1.53006 * 113.73859 * 137.95204 * 10 9 8 12 12 N 1.46500 * 109.46998 * 175.00041 * 11 10 9 13 13 C 1.34769 * 120.00237 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00461 * 180.02562 * 13 12 11 16 16 S 1.80999 * 109.47558 * 179.97438 * 15 13 12 17 17 C 1.76195 * 99.99992 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99977 * 0.02562 * 17 16 15 19 19 C 1.38799 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99680 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47183 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47428 * 119.99945 * 21 19 17 24 24 H 1.48498 * 109.47293 * 239.99993 * 21 19 17 25 25 C 1.47579 * 134.48858 * 0.02562 * 8 6 5 26 26 N 1.34496 * 125.41916 * 180.31471 * 2 1 3 27 27 H 0.97003 * 126.47142 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.46745 * 89.97821 * 1 2 3 29 29 H 1.09004 * 109.46748 * 209.97722 * 1 2 3 30 30 H 1.08994 * 109.46901 * 329.97283 * 1 2 3 31 31 H 1.07998 * 126.10972 * 179.97438 * 4 3 2 32 32 H 1.09005 * 113.77258 * 41.06101 * 9 8 6 33 33 H 1.08997 * 113.77222 * 269.65496 * 9 8 6 34 34 H 1.08994 * 113.74210 * 269.15079 * 10 9 8 35 35 H 1.08993 * 109.46955 * 295.00267 * 11 10 9 36 36 H 1.09000 * 109.47050 * 55.00096 * 11 10 9 37 37 H 0.97010 * 119.99909 * 359.97438 * 12 11 10 38 38 H 1.08996 * 109.47077 * 300.00146 * 15 13 12 39 39 H 1.09004 * 109.46818 * 59.99313 * 15 13 12 40 40 H 0.97009 * 119.99708 * 179.97438 * 20 19 17 41 41 H 1.08992 * 113.77228 * 90.34051 * 25 8 6 42 42 H 1.08999 * 113.77438 * 318.93837 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8029 -1.4983 -0.0013 7 8 5.9038 -0.9800 -0.0020 8 7 4.6903 -2.8414 -0.0015 9 6 5.6530 -3.9599 -0.0028 10 6 4.5275 -4.7917 0.6387 11 6 4.4082 -6.2077 0.0714 12 7 3.3954 -6.9517 0.8245 13 6 3.1186 -8.2301 0.5002 14 8 3.7077 -8.7647 -0.4153 15 6 2.0764 -8.9953 1.2745 16 16 1.9353 -10.6705 0.6037 17 6 0.6870 -11.3204 1.6638 18 1 0.2613 -10.7013 2.4396 19 6 0.2507 -12.6280 1.5018 20 7 0.7692 -13.3824 0.5558 21 14 -1.0732 -13.3169 2.6251 22 1 -1.4884 -12.2747 3.5981 23 1 -2.2452 -13.7315 1.8129 24 1 -0.5381 -14.4924 3.3579 25 6 3.5548 -3.7840 -0.0014 26 7 2.2865 -1.0960 -0.0060 27 1 1.9850 -2.0180 -0.0107 28 1 -0.3632 0.0004 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 4.3979 1.3721 -0.0011 32 1 6.5105 -3.8024 0.6515 33 1 5.9339 -4.2966 -1.0007 34 1 4.5319 -4.7695 1.7284 35 1 4.1157 -6.1556 -0.9772 36 1 5.3692 -6.7151 0.1558 37 1 2.9245 -6.5242 1.5571 38 1 2.3682 -9.0470 2.3234 39 1 1.1154 -8.4880 1.1894 40 1 0.4645 -14.2964 0.4428 41 1 3.2203 -4.0691 -0.9987 42 1 2.7365 -3.4861 0.6541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297165802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = -8.640802 kcal Electronic energy + Delta-G solvation = -25224.082927 eV Core-core repulsion = 21331.436886 eV Total energy + Delta-G solvation = -3892.646040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.35404 -41.44295 -40.40964 -39.00588 -35.71902 -34.56539 -33.99249 -32.97521 -32.02868 -30.48576 -28.48659 -27.67891 -27.45978 -26.61916 -23.63390 -22.12633 -21.94353 -21.50458 -20.75993 -19.78836 -18.94396 -17.81596 -17.71102 -17.52559 -16.90831 -16.86804 -16.81634 -16.56525 -16.16432 -15.72938 -15.39070 -15.01077 -14.81844 -14.58121 -14.37719 -14.30934 -14.16987 -13.73038 -13.58265 -13.44549 -13.26248 -13.13750 -13.07530 -12.90078 -12.59146 -12.44975 -12.01444 -11.69080 -11.55912 -11.31124 -11.16523 -11.14514 -10.90281 -10.23329 -10.08289 -10.06353 -9.54991 -8.63802 -8.33405 -6.10476 0.12512 1.29499 1.42456 1.45589 1.50706 1.60014 1.66647 1.67209 1.83312 2.15592 2.26433 2.31622 3.01188 3.13216 3.21916 3.35986 3.46841 3.70871 3.79349 3.97214 4.06132 4.14673 4.18495 4.26111 4.35123 4.36080 4.47300 4.56596 4.57044 4.64362 4.72842 4.76924 4.80864 4.81351 5.10072 5.13558 5.40927 5.44134 5.46250 6.19023 6.21678 6.36494 6.55168 6.76467 6.87029 7.08667 7.30030 8.75769 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.001879 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.562974 B =14899.239330 C =16280.258846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.248 3.752 3 N -0.529 5.529 4 C 0.056 3.944 5 C -0.098 4.098 6 C 0.615 3.385 7 O -0.570 6.570 8 N -0.647 5.647 9 C 0.114 3.886 10 C -0.108 4.108 11 C 0.131 3.869 12 N -0.710 5.710 13 C 0.535 3.465 14 O -0.566 6.566 15 C -0.130 4.130 16 S -0.156 6.156 17 C -0.543 4.543 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.255 1.255 23 H -0.275 1.275 24 H -0.277 1.277 25 C 0.093 3.907 26 N -0.539 5.539 27 H 0.434 0.566 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.182 0.818 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.418 0.582 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.270 0.730 41 H 0.110 0.890 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 25.992 2.316 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 N -0.250 5.250 4 C -0.098 4.098 5 C -0.214 4.214 6 C 0.406 3.594 7 O -0.450 6.450 8 N -0.381 5.381 9 C -0.008 4.008 10 C -0.127 4.127 11 C 0.007 3.993 12 N -0.364 5.364 13 C 0.320 3.680 14 O -0.445 6.445 15 C -0.281 4.281 16 S 0.071 5.929 17 C -0.691 4.691 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.819 3.181 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.029 4.029 26 N -0.148 5.148 27 H 0.278 0.722 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.199 0.801 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.256 0.744 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.068 26.245 0.711 26.276 hybrid contribution -0.926 -1.061 1.564 2.105 sum 0.142 25.185 2.275 25.287 Atomic orbital electron populations 1.20571 0.81062 1.06187 1.05573 1.24302 0.97446 0.80980 0.98931 1.70228 1.02244 1.29856 1.22687 1.22824 0.95231 0.91819 0.99942 1.20867 0.84338 0.95426 1.20792 1.16598 0.86676 0.80346 0.75772 1.90841 1.27735 1.73114 1.53310 1.49926 1.12774 1.02877 1.72544 1.23337 0.94218 0.80813 1.02392 1.23214 0.95638 0.91249 1.02585 1.21307 0.92126 0.89942 0.95932 1.45653 1.42008 1.11331 1.37427 1.20006 0.82482 0.82358 0.83129 1.90715 1.52499 1.69496 1.31745 1.23380 1.01621 0.99497 1.03635 1.85616 1.52777 1.06992 1.47486 1.23234 1.24625 1.01177 1.20021 0.89781 1.26117 0.99489 0.96306 0.97392 1.70192 1.43066 1.08806 1.32756 0.84924 0.77093 0.78243 0.77812 1.17869 1.20065 1.20224 1.23819 0.91138 0.85104 1.02827 1.43431 1.04871 1.11121 1.55375 0.72235 0.88031 0.87614 0.88283 0.80107 0.89190 0.87996 0.85269 0.90970 0.91300 0.74419 0.87256 0.86875 0.92089 0.87190 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.51 71.24 0.75 0.45 16 2 C 0.25 3.17 8.12 138.20 1.12 4.29 16 3 N -0.53 -10.49 11.20 -187.40 -2.10 -12.59 16 4 C 0.06 1.15 11.66 84.10 0.98 2.14 16 5 C -0.10 -1.77 7.02 40.01 0.28 -1.49 16 6 C 0.62 12.64 8.02 86.47 0.69 13.33 16 7 O -0.57 -16.35 17.63 -4.29 -0.08 -16.42 16 8 N -0.65 -8.59 3.61 -841.23 -3.03 -11.63 16 9 C 0.11 1.21 8.40 86.48 0.73 1.94 16 10 C -0.11 -0.74 3.95 -10.12 -0.04 -0.78 16 11 C 0.13 1.74 5.53 86.38 0.48 2.21 16 12 N -0.71 -12.03 5.56 -463.06 -2.57 -14.60 16 13 C 0.53 16.49 7.85 87.66 0.69 17.17 16 14 O -0.57 -23.40 15.86 -3.04 -0.05 -23.45 16 15 C -0.13 -4.50 6.16 71.24 0.44 -4.07 16 16 S -0.16 -8.16 20.57 -56.49 -1.16 -9.33 16 17 C -0.54 -29.53 9.50 67.95 0.65 -28.89 16 18 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 19 C 0.01 0.64 5.49 84.86 0.47 1.10 16 20 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 21 Si 1.00 41.97 29.55 68.60 2.03 43.99 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 24 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.09 0.52 6.98 86.49 0.60 1.13 16 26 N -0.54 -5.94 5.95 -176.11 -1.05 -6.99 16 27 H 0.43 1.91 5.96 -92.71 -0.55 1.35 16 28 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.18 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16 34 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 1.06 7.83 -2.39 -0.02 1.04 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.42 3.95 8.47 -92.70 -0.79 3.16 16 38 H 0.11 3.38 8.14 -2.40 -0.02 3.36 16 39 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 40 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 41 H 0.11 0.46 7.89 -2.39 -0.02 0.44 16 42 H 0.10 0.10 6.55 -2.39 -0.02 0.09 16 Total: -1.00 -88.19 377.76 -0.16 -88.35 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -0.26 Total: 8.33 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 7.83 Total: 8.54 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -8.47 Total: -100.01 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.12 Total: -39.87 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: -8.16 SS G_CDS: -1.16 Total: -9.33 kcal Total: -88.19 -0.16 -88.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297165802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.709 kcal (2) G-P(sol) polarization free energy of solvation -88.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds