Wall clock time and date at job start Tue Mar 31 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 6 6 N 1.46509 * 109.47332 * 184.99768 * 5 3 2 7 7 C 1.34777 * 119.99772 * 179.97438 * 6 5 3 8 8 O 1.21512 * 120.00370 * 0.02562 * 7 6 5 9 9 C 1.48140 * 119.99487 * 180.02562 * 7 6 5 10 10 C 1.40111 * 121.14252 * 179.72422 * 9 7 6 11 11 C 1.38501 * 117.81976 * 179.74283 * 10 9 7 12 12 N 1.31912 * 119.97183 * 0.54147 * 11 10 9 13 13 N 1.28279 * 122.51406 * 359.71398 * 12 11 10 14 14 C 1.31924 * 122.32967 * 0.02562 * 13 12 11 15 15 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 16 16 C 1.34776 * 120.00080 * 275.00208 * 15 3 2 17 17 O 1.21276 * 120.00121 * 0.02562 * 16 15 3 18 18 C 1.50698 * 119.99878 * 179.97438 * 16 15 3 19 19 S 1.80995 * 109.47176 * 180.02562 * 18 16 15 20 20 C 1.76200 * 100.00285 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99719 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31636 * 119.99929 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00322 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46921 * 59.99534 * 24 22 20 26 26 H 1.48493 * 109.47266 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46650 * 299.99794 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47701 * 305.00165 * 5 3 2 34 34 H 1.09003 * 109.46986 * 65.00616 * 5 3 2 35 35 H 0.96996 * 119.99905 * 0.02562 * 6 5 3 36 36 H 1.08003 * 121.08889 * 359.97438 * 10 9 7 37 37 H 1.08007 * 120.01546 * 180.23320 * 11 10 9 38 38 H 1.07997 * 120.17563 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99703 * 95.00546 * 15 3 2 40 40 H 1.08998 * 109.47466 * 299.99891 * 18 16 15 41 41 H 1.09003 * 109.47620 * 60.00219 * 18 16 15 42 42 H 0.97001 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4442 -0.1257 6 7 4.0631 2.8167 -0.0059 7 6 5.3859 3.0628 -0.0858 8 8 6.1651 2.1464 -0.2575 9 6 5.8897 4.4505 0.0358 10 6 7.2601 4.7330 -0.0378 11 6 7.6546 6.0554 0.0792 12 7 6.7514 6.9987 0.2644 13 7 5.4958 6.7462 0.3380 14 6 5.0151 5.5221 0.2341 15 7 1.6525 2.0974 1.2518 16 6 0.4352 2.6643 1.3670 17 8 -0.3395 2.6319 0.4345 18 6 0.0363 3.3376 2.6549 19 16 -1.6425 3.9952 2.4971 20 6 -1.8442 4.7064 4.0966 21 1 -1.0440 4.6455 4.8194 22 6 -3.0317 5.3439 4.4280 23 7 -4.0071 5.4177 3.5472 24 14 -3.2457 6.0973 6.1239 25 1 -2.2080 7.1378 6.3378 26 1 -4.5932 6.7130 6.2256 27 1 -3.1062 5.0393 7.1566 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.9955 0.8310 0.6659 34 1 3.8499 1.0377 -1.0960 35 1 3.4412 3.5482 0.1315 36 1 7.9846 3.9457 -0.1848 37 1 8.7019 6.3137 0.0238 38 1 3.9512 5.3491 0.3016 39 1 2.2720 2.1231 1.9978 40 1 0.0673 2.6129 3.4685 41 1 0.7277 4.1529 2.8680 42 1 -4.8369 5.8636 3.7786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001297495950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:09 Heat of formation + Delta-G solvation = -44.443054 kcal Electronic energy + Delta-G solvation = -25995.463905 eV Core-core repulsion = 22101.265363 eV Total energy + Delta-G solvation = -3894.198542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.31336 -41.15215 -40.37735 -37.62956 -35.30414 -34.57092 -34.31154 -33.66820 -33.54555 -30.78198 -29.48647 -27.64143 -26.68226 -25.64837 -24.22638 -22.59484 -21.96195 -21.53368 -19.90801 -19.41623 -18.80092 -17.93790 -17.56673 -17.26441 -16.98905 -16.86570 -16.60923 -16.52254 -16.12954 -15.99643 -15.65325 -14.92863 -14.81846 -14.63383 -14.57352 -14.47796 -14.27571 -13.86751 -13.48646 -13.15491 -12.99854 -12.85779 -12.64282 -12.49297 -12.19877 -12.06466 -11.75894 -11.71123 -11.67009 -11.38755 -11.28034 -11.11987 -10.83844 -10.77870 -10.31117 -10.24359 -10.05332 -8.62499 -8.33815 -6.10017 -0.81271 -0.21029 1.28542 1.43272 1.47397 1.56289 1.57804 1.67233 1.78902 2.26249 2.32330 2.51863 2.99013 3.00521 3.15387 3.34051 3.43642 3.46061 3.52366 3.78715 3.99034 4.02040 4.14738 4.31577 4.34592 4.41405 4.48705 4.54051 4.57701 4.66789 4.69770 4.85502 4.91610 5.05711 5.08343 5.15817 5.22441 5.42789 5.50528 5.55712 6.18419 6.20343 6.51961 6.85481 7.08299 7.30465 7.52320 8.74714 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009524 B = 0.002920 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.142840 B = 9587.759586 C =12046.336861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.139 3.861 4 H 0.084 0.916 5 C 0.121 3.879 6 N -0.711 5.711 7 C 0.571 3.429 8 O -0.552 6.552 9 C -0.142 4.142 10 C -0.048 4.048 11 C 0.046 3.954 12 N -0.260 5.260 13 N -0.276 5.276 14 C 0.072 3.928 15 N -0.712 5.712 16 C 0.540 3.460 17 O -0.545 6.545 18 C -0.134 4.134 19 S -0.143 6.143 20 C -0.548 4.548 21 H 0.080 0.920 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.993 3.007 25 H -0.263 1.263 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.410 0.590 36 H 0.185 0.815 37 H 0.219 0.781 38 H 0.189 0.811 39 H 0.414 0.586 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.777 -8.244 -6.751 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C 0.034 3.966 4 H 0.102 0.898 5 C -0.002 4.002 6 N -0.363 5.363 7 C 0.356 3.644 8 O -0.430 6.430 9 C -0.157 4.157 10 C -0.078 4.078 11 C -0.118 4.118 12 N -0.101 5.101 13 N -0.116 5.116 14 C -0.094 4.094 15 N -0.368 5.368 16 C 0.325 3.675 17 O -0.422 6.422 18 C -0.286 4.286 19 S 0.084 5.916 20 C -0.696 4.696 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.815 3.185 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.248 0.752 36 H 0.202 0.798 37 H 0.236 0.764 38 H 0.206 0.794 39 H 0.250 0.750 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.524 -7.287 -8.261 25.975 hybrid contribution 0.278 -0.508 2.102 2.181 sum 23.802 -7.795 -6.158 25.792 Atomic orbital electron populations 1.21745 0.96581 1.00591 1.01333 1.21851 0.95231 0.94806 1.04302 1.21314 0.93198 0.94804 0.87313 0.89830 1.21775 0.91258 0.82406 1.04804 1.45869 1.06713 1.11185 1.72503 1.17873 0.82617 0.87234 0.76629 1.90802 1.56486 1.45775 1.49950 1.21231 0.96258 0.94711 1.03458 1.22969 0.95432 0.99295 0.90103 1.25031 1.03462 0.89310 0.94036 1.72860 0.96883 1.32651 1.07698 1.73075 1.07485 1.20321 1.10671 1.24809 1.02821 0.89122 0.92631 1.45847 1.15759 1.57877 1.17295 1.19818 0.81908 0.77609 0.88129 1.90731 1.51753 1.58754 1.40944 1.23409 1.02254 1.03714 0.99183 1.85502 1.13026 1.71908 1.21123 1.23180 1.04374 1.42118 0.99878 0.90141 1.26054 0.94437 0.95940 1.02529 1.70164 1.05661 1.42140 1.36715 0.85083 0.77703 0.78618 0.77119 1.18758 1.20505 1.18771 0.93938 0.94870 0.92552 0.90093 0.88545 0.88993 0.88372 0.75241 0.79807 0.76446 0.79410 0.74962 0.87857 0.87324 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.51 71.98 0.61 -2.88 16 2 C -0.12 -1.87 5.61 30.59 0.17 -1.70 16 3 C 0.14 2.13 2.42 44.99 0.11 2.24 16 4 H 0.08 1.63 7.58 -2.39 -0.02 1.61 16 5 C 0.12 1.34 5.23 86.38 0.45 1.79 16 6 N -0.71 -8.68 5.35 -465.68 -2.49 -11.17 16 7 C 0.57 8.82 7.80 86.87 0.68 9.50 16 8 O -0.55 -11.38 16.49 -3.75 -0.06 -11.44 16 9 C -0.14 -2.06 5.92 -19.83 -0.12 -2.18 16 10 C -0.05 -0.54 9.77 22.79 0.22 -0.32 16 11 C 0.05 0.54 11.30 84.74 0.96 1.50 16 12 N -0.26 -5.26 11.48 -57.33 -0.66 -5.92 16 13 N -0.28 -6.17 11.49 -56.54 -0.65 -6.82 16 14 C 0.07 1.19 10.84 85.04 0.92 2.12 16 15 N -0.71 -13.16 4.47 -442.55 -1.98 -15.14 16 16 C 0.54 16.49 6.42 87.66 0.56 17.06 16 17 O -0.55 -21.29 13.00 -3.02 -0.04 -21.33 16 18 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 19 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16 20 C -0.55 -30.46 9.50 67.95 0.65 -29.81 16 21 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 22 C 0.02 0.86 5.49 84.86 0.47 1.33 16 23 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 24 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 28 H 0.04 1.17 7.85 -2.39 -0.02 1.15 16 29 H 0.03 1.00 5.64 -2.39 -0.01 0.99 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.41 4.58 6.29 -92.71 -0.58 4.00 16 36 H 0.18 1.31 7.80 -2.91 -0.02 1.29 16 37 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 38 H 0.19 2.32 6.53 -2.91 -0.02 2.30 16 39 H 0.41 5.41 8.60 -92.71 -0.80 4.62 16 40 H 0.10 3.39 8.14 -2.40 -0.02 3.37 16 41 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -81.36 373.39 1.09 -80.27 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -0.31 Total: 15.64 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 6.12 Total: -5.73 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -5.49 Total: -93.86 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.10 Total: -32.77 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal Total: -81.36 1.09 -80.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297495950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.824 kcal (2) G-P(sol) polarization free energy of solvation -81.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds