Wall clock time and date at job start Tue Mar 31 2020 21:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46960 * 2 1 4 4 H 1.09008 * 109.46793 * 54.99972 * 3 2 1 5 5 C 1.53000 * 109.46776 * 174.99584 * 3 2 1 6 6 N 1.46499 * 109.46840 * 174.99842 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21517 * 120.00102 * 0.02562 * 7 6 5 9 9 C 1.48138 * 119.99986 * 180.02562 * 7 6 5 10 10 C 1.40108 * 121.14628 * 179.72515 * 9 7 6 11 11 C 1.38504 * 117.82375 * 179.74115 * 10 9 7 12 12 N 1.31909 * 119.96789 * 0.53379 * 11 10 9 13 13 N 1.28284 * 122.51694 * 359.72499 * 12 11 10 14 14 C 1.31923 * 122.32406 * 359.97438 * 13 12 11 15 15 N 1.46496 * 109.47348 * 294.99912 * 3 2 1 16 16 C 1.34777 * 120.00196 * 84.99904 * 15 3 2 17 17 O 1.21278 * 119.99727 * 0.02562 * 16 15 3 18 18 C 1.50695 * 120.00084 * 180.02562 * 16 15 3 19 19 S 1.80997 * 109.47263 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00034 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00301 * 0.02562 * 20 19 18 22 22 C 1.38801 * 119.99781 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00473 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99842 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47056 * 59.99505 * 24 22 20 26 26 H 1.48501 * 109.46808 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47054 * 299.99784 * 24 22 20 28 28 H 1.08999 * 109.47547 * 300.00062 * 1 2 3 29 29 H 1.09005 * 109.47093 * 60.00026 * 1 2 3 30 30 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47094 * 239.99657 * 2 1 3 32 32 H 1.09004 * 109.46831 * 119.99499 * 2 1 3 33 33 H 1.09002 * 109.47398 * 295.00168 * 5 3 2 34 34 H 1.09001 * 109.47194 * 55.00349 * 5 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 36 36 H 1.08000 * 121.08549 * 359.97438 * 10 9 7 37 37 H 1.08002 * 120.01451 * 180.23381 * 11 10 9 38 38 H 1.08001 * 120.16650 * 179.97438 * 14 13 12 39 39 H 0.97002 * 119.99429 * 265.00252 * 15 3 2 40 40 H 1.09000 * 109.46858 * 300.00364 * 18 16 15 41 41 H 1.08995 * 109.47243 * 59.99692 * 18 16 15 42 42 H 0.96995 * 120.00749 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0860 8 8 6.1650 2.1464 0.2569 9 6 5.8895 4.4508 -0.0346 10 6 7.2588 4.7346 0.0506 11 6 7.6543 6.0558 -0.0771 12 7 6.7510 6.9992 -0.2615 13 7 5.4954 6.7467 -0.3350 14 6 5.0148 5.5224 -0.2320 15 7 1.6524 2.0975 -1.2518 16 6 0.4351 2.6644 -1.3670 17 8 -0.3393 2.6327 -0.4342 18 6 0.0363 3.3377 -2.6548 19 16 -1.6421 3.9965 -2.4967 20 6 -1.8437 4.7075 -4.0962 21 1 -1.0439 4.6459 -4.8192 22 6 -3.0305 5.3468 -4.4268 23 7 -4.0056 5.4215 -3.5458 24 14 -3.2445 6.1000 -6.1229 25 1 -3.1072 5.0415 -7.1555 26 1 -4.5912 6.7177 -6.2238 27 1 -2.2055 7.1389 -6.3379 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8498 1.0377 1.0962 34 1 3.9954 0.8311 -0.6658 35 1 3.4410 3.5484 -0.1308 36 1 7.9826 3.9484 0.2068 37 1 8.7015 6.3141 -0.0209 38 1 3.9508 5.3496 -0.2987 39 1 2.2720 2.1231 -1.9977 40 1 0.7277 4.1529 -2.8679 41 1 0.0674 2.6131 -3.4684 42 1 -4.8351 5.8679 -3.7770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297495951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:13 Heat of formation + Delta-G solvation = -17.085884 kcal Electronic energy + Delta-G solvation = -25994.171590 eV Core-core repulsion = 22101.159344 eV Total energy + Delta-G solvation = -3893.012247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67221 -40.24072 -39.44984 -36.68243 -34.53378 -33.67109 -32.99448 -32.53008 -32.46457 -29.63236 -28.47634 -26.00157 -25.51270 -25.03023 -23.47526 -21.72685 -21.18587 -20.49341 -18.89817 -18.16383 -17.84094 -16.90994 -16.82419 -16.36083 -16.14614 -15.87293 -15.54386 -15.31302 -15.02722 -14.83725 -14.30019 -14.14047 -13.93488 -13.70400 -13.57927 -13.30127 -13.17076 -12.57523 -12.42406 -11.87053 -11.60097 -11.47485 -11.32886 -11.08227 -11.06632 -10.96430 -10.87237 -10.79273 -10.75394 -10.64375 -10.12117 -9.86758 -9.70179 -9.48323 -9.10537 -9.02908 -8.30693 -6.55378 -6.25720 -3.96915 -0.19289 0.35856 2.23677 2.40198 2.90255 2.95416 3.14092 3.21262 3.24942 3.27556 3.56445 3.59528 3.76535 3.99358 4.03217 4.16602 4.22190 4.31600 4.72277 4.78683 4.89062 5.02898 5.05283 5.09813 5.11246 5.24571 5.27519 5.33791 5.52249 5.55985 5.65875 5.73039 5.78346 5.84569 5.98207 6.05504 6.14319 6.45294 6.54725 6.82232 7.51135 7.52150 7.55724 8.15408 8.30783 8.46580 9.19922 10.81545 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.009524 B = 0.002920 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.329606 B = 9587.491403 C =12046.159967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.133 3.867 4 H 0.098 0.902 5 C 0.112 3.888 6 N -0.717 5.717 7 C 0.565 3.435 8 O -0.525 6.525 9 C -0.135 4.135 10 C -0.057 4.057 11 C 0.037 3.963 12 N -0.225 5.225 13 N -0.235 5.235 14 C 0.073 3.927 15 N -0.739 5.739 16 C 0.533 3.467 17 O -0.506 6.506 18 C -0.156 4.156 19 S -0.056 6.056 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.407 0.593 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.176 0.824 39 H 0.398 0.602 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.940 -7.221 7.671 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.116 0.884 5 C -0.011 4.011 6 N -0.370 5.370 7 C 0.350 3.650 8 O -0.401 6.401 9 C -0.150 4.150 10 C -0.087 4.087 11 C -0.127 4.127 12 N -0.067 5.067 13 N -0.076 5.076 14 C -0.092 4.092 15 N -0.395 5.395 16 C 0.319 3.681 17 O -0.379 6.379 18 C -0.307 4.307 19 S 0.170 5.830 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.243 0.757 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.193 0.807 39 H 0.232 0.768 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 20.653 -6.264 9.196 23.460 hybrid contribution 1.030 -0.721 -2.459 2.761 sum 21.683 -6.985 6.737 23.756 Atomic orbital electron populations 1.21807 0.93876 1.00839 1.03910 1.21876 0.97932 0.94709 1.02279 1.21267 0.91934 0.95057 0.88978 0.88406 1.21809 0.93181 0.82425 1.03699 1.45891 1.06976 1.10841 1.73251 1.17879 0.82584 0.87400 0.77181 1.90812 1.55842 1.45085 1.48399 1.21212 0.95598 0.95254 1.02891 1.22649 0.95562 0.98751 0.91745 1.24462 1.02391 0.89872 0.95973 1.72965 0.96604 1.30936 1.06212 1.73174 1.06621 1.18965 1.08865 1.24639 1.02032 0.89564 0.92987 1.46159 1.17592 1.59633 1.16067 1.20290 0.80705 0.77444 0.89661 1.90729 1.50158 1.56995 1.40010 1.23556 1.07255 1.02839 0.97023 1.85376 1.06253 1.70831 1.20515 1.22817 1.04009 1.42292 0.99478 0.91006 1.24979 0.94820 0.95485 0.98171 1.69992 1.05049 1.40890 1.34318 0.86241 0.77591 0.79289 0.82499 1.19951 1.20786 1.19875 0.91947 0.91699 0.93495 0.91618 0.91099 0.89440 0.90223 0.75687 0.81854 0.80129 0.80692 0.76778 0.89292 0.89289 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.52 37.16 0.32 -1.49 16 2 C -0.13 -1.14 5.61 -26.73 -0.15 -1.29 16 3 C 0.13 1.17 2.41 -67.93 -0.16 1.00 16 4 H 0.10 1.01 7.58 -51.92 -0.39 0.62 16 5 C 0.11 0.80 5.23 -4.04 -0.02 0.78 16 6 N -0.72 -5.25 5.35 -61.16 -0.33 -5.58 16 7 C 0.56 5.01 7.80 -12.19 -0.10 4.92 16 8 O -0.53 -6.09 16.49 5.35 0.09 -6.00 16 9 C -0.14 -1.10 5.92 -104.58 -0.62 -1.72 16 10 C -0.06 -0.39 9.77 -38.78 -0.38 -0.77 16 11 C 0.04 0.25 11.30 -17.42 -0.20 0.06 16 12 N -0.22 -2.36 11.48 30.53 0.35 -2.01 16 13 N -0.24 -2.66 11.49 30.78 0.35 -2.30 16 14 C 0.07 0.63 10.84 -16.96 -0.18 0.45 16 15 N -0.74 -7.55 4.47 -53.81 -0.24 -7.79 16 16 C 0.53 8.28 6.42 -10.99 -0.07 8.20 16 17 O -0.51 -9.64 13.00 5.56 0.07 -9.57 16 18 C -0.16 -2.83 6.16 36.00 0.22 -2.61 16 19 S -0.06 -1.44 20.57 -107.50 -2.21 -3.65 16 20 C -0.54 -14.83 9.50 30.94 0.29 -14.54 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 24 Si 0.92 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 29 H 0.06 0.98 5.65 -51.93 -0.29 0.69 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.41 2.69 6.29 -40.82 -0.26 2.43 16 36 H 0.16 0.84 7.80 -52.49 -0.41 0.43 16 37 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.18 1.15 6.53 -52.49 -0.34 0.81 16 39 H 0.40 3.22 8.60 -40.82 -0.35 2.87 16 40 H 0.09 1.48 8.14 -51.92 -0.42 1.05 16 41 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -35.75 373.39 -7.10 -42.85 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.38 Total: 2.28 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.14 Total: -5.01 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.87 Total: -42.55 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.16 Total: -15.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.75 -7.10 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297495951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.768 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds