Wall clock time and date at job start Tue Mar 31 2020 20:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30852 * 125.41920 * 2 1 4 4 C 1.33321 * 109.68625 * 179.78603 * 3 2 1 5 5 C 1.36661 * 107.78128 * 0.37959 * 4 3 2 6 6 C 1.46771 * 126.84101 * 179.89530 * 5 4 3 7 7 O 1.21687 * 119.99984 * 359.68975 * 6 5 4 8 8 N 1.34769 * 119.99928 * 179.68626 * 6 5 4 9 9 C 1.47065 * 136.05905 * 354.78094 * 8 6 5 10 10 C 1.53503 * 87.98705 * 153.14140 * 9 8 6 11 11 C 1.47068 * 136.05842 * 175.15960 * 8 6 5 12 12 H 1.09007 * 113.46690 * 92.02004 * 11 8 6 13 13 C 1.53002 * 113.46490 * 321.64298 * 11 8 6 14 14 N 1.46501 * 109.47026 * 176.22850 * 13 11 8 15 15 C 1.34780 * 119.99940 * 184.96522 * 14 13 11 16 16 O 1.21275 * 120.00246 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00002 * 179.97438 * 15 14 13 18 18 S 1.80995 * 109.47462 * 179.97438 * 17 15 14 19 19 C 1.76194 * 100.00406 * 179.97438 * 18 17 15 20 20 H 1.08006 * 119.99973 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00387 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00574 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99871 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47202 * 89.99920 * 23 21 19 25 25 H 1.48500 * 109.47541 * 209.99925 * 23 21 19 26 26 H 1.48504 * 109.47114 * 330.00070 * 23 21 19 27 27 N 1.34499 * 125.41898 * 180.02562 * 2 1 3 28 28 H 0.97006 * 126.46876 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47196 * 269.97394 * 1 2 3 30 30 H 1.09001 * 109.47290 * 29.97197 * 1 2 3 31 31 H 1.09001 * 109.47332 * 149.97239 * 1 2 3 32 32 H 1.08002 * 126.10688 * 180.27664 * 4 3 2 33 33 H 1.08994 * 113.47185 * 267.92375 * 9 8 6 34 34 H 1.09000 * 113.46754 * 38.36446 * 9 8 6 35 35 H 1.08997 * 114.20495 * 272.48585 * 10 9 8 36 36 H 1.09002 * 114.38567 * 139.66803 * 10 9 8 37 37 H 1.08998 * 109.47132 * 296.22646 * 13 11 8 38 38 H 1.08997 * 109.47420 * 56.22824 * 13 11 8 39 39 H 0.97004 * 120.00160 * 4.95894 * 14 13 11 40 40 H 1.09006 * 109.47128 * 299.99975 * 17 15 14 41 41 H 1.09006 * 109.47018 * 59.99316 * 17 15 14 42 42 H 0.96993 * 120.00213 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0047 5 6 3.5975 -0.6609 -0.0008 6 6 4.8028 -1.4983 -0.0007 7 8 5.9038 -0.9801 -0.0009 8 7 4.6902 -2.8413 -0.0002 9 6 3.5890 -3.8116 0.0931 10 6 4.4651 -4.7994 -0.6899 11 6 5.6151 -3.9816 -0.0860 12 1 5.9450 -4.3471 0.8865 13 6 6.7755 -3.7530 -1.0566 14 7 7.6866 -4.8992 -1.0070 15 6 8.8381 -4.8756 -1.7070 16 8 9.1199 -3.9057 -2.3783 17 6 9.7756 -6.0544 -1.6555 18 16 11.2212 -5.7215 -2.6924 19 6 12.1208 -7.2174 -2.4527 20 1 11.7220 -7.9908 -1.8130 21 6 13.3415 -7.4023 -3.0869 22 7 14.0134 -8.5201 -2.9082 23 14 14.0310 -6.0650 -4.1939 24 1 14.8702 -5.1406 -3.3898 25 1 14.8585 -6.6832 -5.2608 26 1 12.9125 -5.3078 -4.8112 27 7 2.2865 -1.0961 -0.0005 28 1 1.9849 -2.0181 -0.0006 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 4.3978 1.3722 0.0100 33 1 3.3784 -4.1325 1.1132 34 1 2.6930 -3.5044 -0.4461 35 1 4.3765 -4.7139 -1.7729 36 1 4.4127 -5.8281 -0.3331 37 1 6.3863 -3.6419 -2.0686 38 1 7.3137 -2.8486 -0.7730 39 1 7.4611 -5.6752 -0.4703 40 1 10.0961 -6.2191 -0.6267 41 1 9.2622 -6.9431 -2.0227 42 1 14.8662 -8.6495 -3.3517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298982921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:07 Heat of formation + Delta-G solvation = -3.475793 kcal Electronic energy + Delta-G solvation = -25521.427491 eV Core-core repulsion = 21629.005423 eV Total energy + Delta-G solvation = -3892.422069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.37050 -41.64388 -40.50577 -39.01102 -35.85645 -34.67498 -34.00643 -32.97654 -31.77321 -30.88943 -28.93181 -28.24131 -27.82891 -24.59937 -24.39488 -22.56318 -22.01772 -21.69919 -20.71801 -19.93226 -19.02034 -18.02016 -17.82009 -17.37632 -17.11672 -16.82688 -16.77855 -16.64433 -16.02838 -15.67524 -15.27502 -15.15004 -14.98457 -14.88999 -14.72248 -14.43403 -14.15585 -13.76168 -13.61780 -13.44988 -13.35633 -13.24820 -13.07474 -12.99562 -12.69104 -12.57169 -11.90360 -11.77457 -11.56387 -11.31222 -11.18044 -11.14319 -11.06233 -10.53209 -10.25315 -10.09345 -9.57217 -9.00993 -8.52244 -6.22925 0.11203 0.95739 1.30266 1.32956 1.47378 1.51786 1.57695 1.65929 1.82977 2.12554 2.23227 2.28860 2.71990 2.86157 3.13797 3.29451 3.48259 3.65653 3.81377 3.86205 3.92770 3.96570 4.18501 4.23645 4.28830 4.36799 4.41420 4.46088 4.60382 4.64522 4.74595 4.79820 4.84479 4.95671 5.11008 5.16251 5.29933 5.38986 5.70528 6.11112 6.22041 6.41317 6.42181 6.76380 6.87107 6.93535 7.16156 8.59845 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.031228 B = 0.001855 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.424408 B =15087.556785 C =15709.284297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.249 3.751 3 N -0.531 5.531 4 C 0.052 3.948 5 C -0.093 4.093 6 C 0.615 3.385 7 O -0.570 6.570 8 N -0.649 5.649 9 C 0.094 3.906 10 C -0.130 4.130 11 C 0.122 3.878 12 H 0.126 0.874 13 C 0.120 3.880 14 N -0.702 5.702 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.106 4.106 18 S -0.185 6.185 19 C -0.526 4.526 20 H 0.067 0.933 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.265 1.265 25 H -0.258 1.258 26 H -0.239 1.239 27 N -0.536 5.536 28 H 0.435 0.565 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.125 0.875 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.423 0.577 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.586 7.209 10.183 38.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 N -0.252 5.252 4 C -0.102 4.102 5 C -0.210 4.210 6 C 0.406 3.594 7 O -0.449 6.449 8 N -0.384 5.384 9 C -0.026 4.026 10 C -0.168 4.168 11 C 0.019 3.981 12 H 0.143 0.857 13 C -0.005 4.005 14 N -0.357 5.357 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.257 4.257 18 S 0.041 5.959 19 C -0.674 4.674 20 H 0.085 0.915 21 C -0.157 4.157 22 N -0.553 5.553 23 Si 0.733 3.267 24 H -0.190 1.190 25 H -0.182 1.182 26 H -0.163 1.163 27 N -0.145 5.145 28 H 0.280 0.720 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.192 0.808 33 H 0.143 0.857 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.155 0.845 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.261 0.739 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -35.667 9.980 9.047 38.126 hybrid contribution 1.155 -2.004 0.556 2.379 sum -34.513 7.976 9.603 36.701 Atomic orbital electron populations 1.20586 0.80618 1.06230 1.05749 1.24388 0.97567 0.80870 0.98698 1.70222 1.02053 1.30125 1.22785 1.22770 0.95284 0.91958 1.00153 1.20749 0.84364 0.95184 1.20668 1.16631 0.86743 0.80240 0.75800 1.90897 1.28015 1.73219 1.52762 1.49776 1.13814 1.02483 1.72373 1.23472 0.91047 0.84930 1.03194 1.23592 0.91608 1.00320 1.01268 1.23175 0.91226 0.83960 0.99740 0.85662 1.21386 0.90693 0.88803 0.99642 1.45406 1.19483 1.20925 1.49935 1.20104 0.81934 0.87420 0.78703 1.90718 1.75261 1.36176 1.42425 1.23241 0.97174 1.00154 1.05150 1.84875 1.21461 1.26293 1.63256 1.22439 1.08166 1.02330 1.34421 0.91509 1.25497 0.95916 0.97449 0.96884 1.70003 1.15341 1.26193 1.43726 0.85919 0.80648 0.80016 0.80108 1.18970 1.18184 1.16348 1.43376 1.04473 1.11174 1.55475 0.71964 0.87678 0.88523 0.87276 0.80765 0.85673 0.88902 0.88586 0.84543 0.92323 0.93895 0.73896 0.86499 0.85953 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.13 10.51 71.24 0.75 0.62 16 2 C 0.25 3.00 8.12 138.20 1.12 4.12 16 3 N -0.53 -10.94 11.20 -187.39 -2.10 -13.04 16 4 C 0.05 1.20 11.66 84.10 0.98 2.18 16 5 C -0.09 -1.82 7.04 40.01 0.28 -1.54 16 6 C 0.61 14.34 7.92 86.47 0.68 15.03 16 7 O -0.57 -19.29 16.52 -4.31 -0.07 -19.36 16 8 N -0.65 -9.28 3.56 -838.37 -2.99 -12.27 16 9 C 0.09 0.18 7.58 83.18 0.63 0.81 16 10 C -0.13 -0.39 8.02 30.93 0.25 -0.15 16 11 C 0.12 1.48 4.07 41.78 0.17 1.65 16 12 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 13 C 0.12 2.79 5.46 86.38 0.47 3.27 16 14 N -0.70 -15.93 5.55 -463.06 -2.57 -18.50 16 15 C 0.53 18.65 7.85 87.66 0.69 19.33 16 16 O -0.57 -26.02 15.86 -3.01 -0.05 -26.07 16 17 C -0.11 -3.91 6.16 71.24 0.44 -3.47 16 18 S -0.19 -9.49 18.55 -56.49 -1.05 -10.53 16 19 C -0.53 -30.52 10.04 67.95 0.68 -29.84 16 20 H 0.07 4.03 8.03 -2.91 -0.02 4.01 16 21 C 0.05 2.83 5.50 84.86 0.47 3.30 16 22 N -0.91 -55.52 13.97 21.65 0.30 -55.22 16 23 Si 0.91 45.62 27.74 68.60 1.90 47.52 16 24 H -0.26 -13.06 7.11 99.48 0.71 -12.36 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.24 -12.08 6.74 99.48 0.67 -11.41 16 27 N -0.54 -5.47 5.98 -176.12 -1.05 -6.52 16 28 H 0.44 0.89 5.93 -92.70 -0.55 0.34 16 29 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.18 4.07 8.06 -2.91 -0.02 4.04 16 33 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.09 -0.21 6.11 -2.39 -0.01 -0.23 16 35 H 0.10 0.51 7.95 -2.39 -0.02 0.49 16 36 H 0.14 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.06 1.51 7.90 -2.39 -0.02 1.49 16 38 H 0.04 1.42 7.16 -2.39 -0.02 1.41 16 39 H 0.42 5.61 8.48 -92.71 -0.79 4.82 16 40 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 41 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -94.66 372.86 -0.35 -95.01 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -0.29 Total: 3.68 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 7.61 Total: 15.29 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -8.41 Total: -105.55 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.12 Total: -45.43 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.90 Total: 47.52 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.05 Total: -10.53 kcal Total: -94.66 -0.35 -95.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298982921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.538 kcal (2) G-P(sol) polarization free energy of solvation -94.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds