Wall clock time and date at job start Tue Mar 31 2020 20:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.41985 * 2 1 4 4 C 1.33322 * 109.68666 * 179.97438 * 3 2 1 5 5 C 1.36660 * 107.78377 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84242 * 180.02562 * 5 4 3 7 7 O 1.21679 * 120.00443 * 359.97438 * 6 5 4 8 8 N 1.34781 * 120.00075 * 179.97438 * 6 5 4 9 9 C 1.47068 * 136.05743 * 354.51609 * 8 6 5 10 10 C 1.53228 * 88.08289 * 207.19923 * 9 8 6 11 11 C 1.47067 * 136.05748 * 174.88261 * 8 6 5 12 12 H 1.09007 * 113.46645 * 267.62586 * 11 8 6 13 13 C 1.52995 * 113.46784 * 38.06825 * 11 8 6 14 14 N 1.46502 * 109.47042 * 184.28455 * 13 11 8 15 15 C 1.34779 * 120.00017 * 184.98492 * 14 13 11 16 16 O 1.21286 * 119.99994 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00168 * 179.97438 * 15 14 13 18 18 S 1.81001 * 109.47192 * 179.97438 * 17 15 14 19 19 C 1.76199 * 99.99771 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00192 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00031 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00476 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99828 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.47254 * 89.99782 * 23 21 19 25 25 H 1.48493 * 109.47247 * 209.99835 * 23 21 19 26 26 H 1.48500 * 109.47060 * 330.00045 * 23 21 19 27 27 N 1.34493 * 125.41857 * 179.97438 * 2 1 3 28 28 H 0.97003 * 126.47289 * 0.05389 * 27 2 1 29 29 H 1.08997 * 109.47199 * 270.02427 * 1 2 3 30 30 H 1.09005 * 109.47010 * 30.02942 * 1 2 3 31 31 H 1.08999 * 109.47203 * 150.02255 * 1 2 3 32 32 H 1.07994 * 126.10378 * 180.26180 * 4 3 2 33 33 H 1.08996 * 113.46449 * 321.93678 * 9 8 6 34 34 H 1.09005 * 113.46450 * 92.36936 * 9 8 6 35 35 H 1.09004 * 114.33149 * 220.46528 * 10 9 8 36 36 H 1.09005 * 114.19716 * 87.72697 * 10 9 8 37 37 H 1.09007 * 109.47263 * 304.28048 * 13 11 8 38 38 H 1.08995 * 109.47688 * 64.28355 * 13 11 8 39 39 H 0.96994 * 120.00384 * 4.98320 * 14 13 11 40 40 H 1.08994 * 109.46874 * 299.99864 * 17 15 14 41 41 H 1.09006 * 109.47141 * 59.99676 * 17 15 14 42 42 H 0.96992 * 120.00406 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0006 5 6 3.5976 -0.6609 0.0015 6 6 4.8028 -1.4983 0.0029 7 8 5.9037 -0.9801 0.0029 8 7 4.6902 -2.8414 0.0043 9 6 3.5894 -3.8117 0.1023 10 6 4.5881 -4.8062 0.7035 11 6 5.6148 -3.9816 -0.0852 12 1 5.7673 -4.3379 -1.1040 13 6 6.9280 -3.7618 0.6684 14 7 7.8198 -4.9010 0.4380 15 6 8.9996 -4.9749 1.0854 16 8 9.3232 -4.0981 1.8583 17 6 9.9168 -6.1471 0.8489 18 16 11.4096 -5.9577 1.8547 19 6 12.2756 -7.4219 1.3955 20 1 11.8386 -8.1072 0.6843 21 6 13.5191 -7.6950 1.9485 22 7 14.1659 -8.7890 1.6059 23 14 14.2740 -6.5107 3.1802 24 1 13.8559 -6.8914 4.5534 25 1 15.7544 -6.5689 3.0795 26 1 13.8118 -5.1303 2.8869 27 7 2.2864 -1.0960 0.0005 28 1 1.9849 -2.0180 0.0002 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.3978 1.3722 0.0047 33 1 2.8063 -3.5107 0.7982 34 1 3.1969 -4.1221 -0.8661 35 1 4.4703 -5.8304 0.3493 36 1 4.6937 -4.7342 1.7860 37 1 7.4043 -2.8492 0.3098 38 1 6.7239 -3.6700 1.7351 39 1 7.5612 -5.6021 -0.1803 40 1 9.4063 -7.0694 1.1258 41 1 10.1918 -6.1864 -0.2052 42 1 15.0346 -8.9801 1.9927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298982928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:10 Heat of formation + Delta-G solvation = -5.008894 kcal Electronic energy + Delta-G solvation = -25503.712997 eV Core-core repulsion = 21611.224448 eV Total energy + Delta-G solvation = -3892.488549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.36126 -41.64780 -40.49870 -38.99919 -35.85147 -34.67487 -33.99776 -32.97559 -31.76883 -30.88897 -28.92977 -28.23296 -27.82674 -24.58470 -24.37267 -22.55291 -22.03638 -21.69989 -20.71488 -19.93335 -18.97099 -17.98845 -17.81590 -17.36968 -17.11240 -16.84945 -16.76715 -16.66321 -16.02563 -15.68703 -15.21913 -15.13009 -15.03415 -14.90909 -14.68518 -14.43047 -14.15417 -13.76514 -13.60994 -13.45181 -13.35888 -13.24100 -13.05481 -12.95938 -12.68883 -12.57471 -11.91619 -11.81251 -11.56662 -11.30606 -11.17789 -11.14812 -11.05047 -10.53113 -10.22101 -10.08308 -9.56750 -9.00795 -8.52132 -6.22797 0.11789 0.96130 1.29915 1.33653 1.47762 1.52155 1.57982 1.67102 1.83028 2.13803 2.23295 2.28567 2.72133 2.86266 3.14305 3.31025 3.51406 3.64720 3.80773 3.87175 3.95316 3.96605 4.20677 4.23852 4.29050 4.36673 4.41663 4.46291 4.60323 4.65327 4.74718 4.80215 4.86228 4.95465 5.11231 5.16182 5.30667 5.39448 5.70609 6.11211 6.22819 6.41500 6.43000 6.76948 6.87704 6.93624 7.16411 8.59985 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.033559 B = 0.001831 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.151144 B =15289.921669 C =15863.473585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.249 3.751 3 N -0.531 5.531 4 C 0.052 3.948 5 C -0.094 4.094 6 C 0.615 3.385 7 O -0.569 6.569 8 N -0.649 5.649 9 C 0.091 3.909 10 C -0.133 4.133 11 C 0.124 3.876 12 H 0.131 0.869 13 C 0.121 3.879 14 N -0.703 5.703 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.106 4.106 18 S -0.185 6.185 19 C -0.526 4.526 20 H 0.066 0.934 21 C 0.048 3.952 22 N -0.915 5.915 23 Si 0.911 3.089 24 H -0.262 1.262 25 H -0.259 1.259 26 H -0.241 1.241 27 N -0.535 5.535 28 H 0.436 0.564 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.422 0.578 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.025 8.440 -7.009 38.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 N -0.252 5.252 4 C -0.102 4.102 5 C -0.210 4.210 6 C 0.406 3.594 7 O -0.448 6.448 8 N -0.384 5.384 9 C -0.030 4.030 10 C -0.170 4.170 11 C 0.020 3.980 12 H 0.148 0.852 13 C -0.005 4.005 14 N -0.358 5.358 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.257 4.257 18 S 0.042 5.958 19 C -0.674 4.674 20 H 0.085 0.915 21 C -0.157 4.157 22 N -0.553 5.553 23 Si 0.733 3.267 24 H -0.186 1.186 25 H -0.183 1.183 26 H -0.165 1.165 27 N -0.144 5.144 28 H 0.280 0.720 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.192 0.808 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.260 0.740 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -36.034 11.062 -5.739 38.128 hybrid contribution 1.069 -1.991 -0.659 2.354 sum -34.964 9.071 -6.398 36.684 Atomic orbital electron populations 1.20584 0.80637 1.06296 1.05669 1.24376 0.97548 0.80855 0.98723 1.70224 1.02069 1.30124 1.22794 1.22767 0.95272 0.91964 1.00156 1.20754 0.84381 0.95185 1.20656 1.16617 0.86754 0.80177 0.75824 1.90894 1.27963 1.73167 1.52773 1.49741 1.13701 1.02499 1.72472 1.23439 0.91290 0.84859 1.03369 1.23519 0.92527 1.00263 1.00713 1.23188 0.89499 0.83813 1.01465 0.85152 1.21400 0.90295 0.88720 1.00042 1.45427 1.17774 1.25969 1.46615 1.20096 0.82039 0.86323 0.79674 1.90719 1.74817 1.41523 1.37526 1.23241 0.97052 1.00366 1.05071 1.84871 1.18557 1.32254 1.60155 1.22443 1.06888 1.07162 1.30896 0.91532 1.25499 0.96260 0.96447 0.97534 1.69999 1.15300 1.25865 1.44109 0.85915 0.79218 0.81405 0.80136 1.18643 1.18319 1.16520 1.43282 1.04470 1.11159 1.55447 0.71975 0.87894 0.88449 0.87164 0.80759 0.88726 0.85402 0.84676 0.89110 0.93776 0.92557 0.73956 0.85966 0.86536 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.12 10.51 71.24 0.75 0.63 16 2 C 0.25 2.93 8.12 138.20 1.12 4.05 16 3 N -0.53 -10.80 11.20 -187.40 -2.10 -12.90 16 4 C 0.05 1.18 11.66 84.10 0.98 2.16 16 5 C -0.09 -1.79 7.04 40.01 0.28 -1.51 16 6 C 0.62 14.14 7.97 86.47 0.69 14.83 16 7 O -0.57 -19.00 16.27 -4.28 -0.07 -19.07 16 8 N -0.65 -9.18 3.57 -838.89 -2.99 -12.17 16 9 C 0.09 0.18 7.12 83.09 0.59 0.77 16 10 C -0.13 -0.53 8.00 30.84 0.25 -0.28 16 11 C 0.12 1.49 4.09 41.79 0.17 1.66 16 12 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 13 C 0.12 2.84 5.40 86.38 0.47 3.31 16 14 N -0.70 -16.06 5.55 -463.05 -2.57 -18.63 16 15 C 0.53 18.66 7.85 87.66 0.69 19.34 16 16 O -0.57 -25.96 15.86 -3.05 -0.05 -26.01 16 17 C -0.11 -3.92 6.16 71.24 0.44 -3.48 16 18 S -0.18 -9.45 18.55 -56.49 -1.05 -10.50 16 19 C -0.53 -30.54 10.04 67.95 0.68 -29.85 16 20 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 21 C 0.05 2.83 5.50 84.86 0.47 3.30 16 22 N -0.91 -55.52 13.97 21.65 0.30 -55.21 16 23 Si 0.91 45.56 27.74 68.60 1.90 47.47 16 24 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.24 -12.22 6.74 99.48 0.67 -11.55 16 27 N -0.54 -5.28 5.98 -176.12 -1.05 -6.34 16 28 H 0.44 0.73 6.25 -92.71 -0.58 0.15 16 29 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 31 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 32 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 33 H 0.09 -0.13 6.88 -2.39 -0.02 -0.15 16 34 H 0.13 -0.52 8.14 -2.38 -0.02 -0.54 16 35 H 0.14 -0.29 8.14 -2.38 -0.02 -0.30 16 36 H 0.09 0.66 7.95 -2.38 -0.02 0.65 16 37 H 0.04 1.44 7.03 -2.38 -0.02 1.42 16 38 H 0.06 1.54 7.88 -2.39 -0.02 1.52 16 39 H 0.42 5.71 8.48 -92.71 -0.79 4.93 16 40 H 0.12 3.93 8.14 -2.40 -0.02 3.91 16 41 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -94.25 373.09 -0.43 -94.68 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -0.33 Total: 3.74 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 7.57 Total: 14.94 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -8.41 Total: -105.25 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -0.12 Total: -45.08 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -1.05 Total: -10.50 kcal Total: -94.25 -0.43 -94.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298982928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.675 kcal (2) G-P(sol) polarization free energy of solvation -94.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds