Wall clock time and date at job start Tue Mar 31 2020 20:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29436 * 124.80543 * 2 1 4 4 C 1.30940 * 117.36506 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.90417 * 180.02562 * 4 3 2 6 6 C 1.35663 * 114.19175 * 0.02562 * 4 3 2 7 7 C 1.46683 * 126.13160 * 180.02562 * 6 4 3 8 8 O 1.21691 * 120.00052 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00289 * 180.02562 * 7 6 4 10 10 C 1.46500 * 120.00092 * 180.02562 * 9 7 6 11 11 C 1.53514 * 114.16894 * 204.99717 * 10 9 7 12 12 N 1.47482 * 87.93039 * 220.32940 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 S 1.70950 * 124.80491 * 180.27815 * 2 1 3 27 27 H 1.09007 * 109.47224 * 90.02309 * 1 2 3 28 28 H 1.08998 * 109.47340 * 210.02368 * 1 2 3 29 29 H 1.09006 * 109.47277 * 330.02668 * 1 2 3 30 30 H 1.09002 * 109.47272 * 270.00061 * 5 4 3 31 31 H 1.09005 * 109.47326 * 29.99873 * 5 4 3 32 32 H 1.08995 * 109.47263 * 149.99767 * 5 4 3 33 33 H 0.97003 * 119.99729 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.38392 * 338.07920 * 10 9 7 35 35 H 1.08994 * 113.47382 * 105.55784 * 11 10 9 36 36 H 1.09003 * 113.47448 * 335.09691 * 11 10 9 37 37 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 38 38 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 39 39 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 40 40 H 0.96993 * 120.00255 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 42 42 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 0.0005 5 6 4.5197 2.0418 0.0012 6 6 3.9351 -0.4058 0.0004 7 6 5.3188 -0.8926 0.0015 8 8 6.2425 -0.1003 0.0020 9 7 5.5673 -2.2172 0.0007 10 6 6.9493 -2.7033 0.0023 11 6 7.1219 -4.1088 -0.5904 12 7 8.0860 -4.3880 0.4902 13 6 7.8966 -5.7419 1.0278 14 6 9.0410 -6.0818 1.9475 15 8 9.9270 -5.2753 2.1368 16 7 9.0796 -7.2816 2.5604 17 6 10.1205 -7.5905 3.3975 18 1 10.9097 -6.8727 3.5654 19 6 10.1605 -8.8275 4.0289 20 7 11.1579 -9.1236 4.8317 21 14 8.7957 -10.0694 3.7378 22 1 9.1467 -10.9279 2.5782 23 1 8.6294 -10.9148 4.9474 24 1 7.5259 -9.3525 3.4567 25 6 7.3726 -3.3898 1.3085 26 16 2.4827 -1.4037 -0.0068 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8903 0.5134 30 1 4.7554 2.3189 -1.0264 31 1 4.0764 2.8948 0.5150 32 1 5.4330 1.7425 0.5153 33 1 4.8310 -2.8487 -0.0001 34 1 7.6659 -1.9710 -0.3695 35 1 7.5707 -4.1090 -1.5837 36 1 6.2192 -4.7173 -0.5349 37 1 7.8655 -6.4580 0.2065 38 1 6.9594 -5.7847 1.5828 39 1 8.3709 -7.9263 2.4092 40 1 11.1860 -9.9873 5.2722 41 1 6.5369 -3.8064 1.8708 42 1 8.0340 -2.7807 1.9246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318086658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:26 Heat of formation + Delta-G solvation = 22.193453 kcal Electronic energy + Delta-G solvation = -25663.232443 eV Core-core repulsion = 21771.923477 eV Total energy + Delta-G solvation = -3891.308967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97798 -40.39575 -39.01506 -37.89191 -34.42849 -33.89434 -33.44685 -31.68947 -30.35968 -29.70054 -28.54344 -26.04873 -25.66360 -23.77036 -23.36645 -22.00322 -20.67827 -19.59573 -19.40893 -18.52815 -18.28689 -17.18565 -16.57161 -16.20116 -15.99944 -15.41683 -15.26529 -15.06919 -14.82559 -14.54674 -14.38465 -13.87278 -13.66821 -13.54902 -13.39857 -13.02008 -12.95307 -12.76507 -12.72092 -12.46565 -12.44794 -12.20519 -11.79166 -11.70720 -11.36099 -11.20912 -10.79348 -10.61338 -10.47736 -10.12395 -9.98304 -9.97795 -9.56842 -9.39276 -9.13810 -8.98728 -8.37072 -8.17836 -6.30741 -3.82265 -0.22240 0.67783 1.07753 1.99863 2.66287 2.78096 3.00050 3.05109 3.13402 3.49438 3.72524 3.91187 4.09373 4.24151 4.37130 4.41629 4.65203 4.68252 4.71137 4.79965 4.84777 5.05034 5.16845 5.21247 5.22863 5.37629 5.43015 5.44830 5.45558 5.52996 5.54743 5.71371 5.87035 5.94292 6.01897 6.15379 6.33879 6.92902 7.02859 7.19351 7.57935 7.77392 8.14385 8.60486 8.95784 9.42374 9.83964 10.82517 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002055 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.764948 B =13621.514936 C =14452.566734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.068 3.932 3 N -0.479 5.479 4 C 0.156 3.844 5 C -0.092 4.092 6 C -0.304 4.304 7 C 0.601 3.399 8 O -0.515 6.515 9 N -0.714 5.714 10 C 0.120 3.880 11 C -0.014 4.014 12 N -0.432 5.432 13 C 0.008 3.992 14 C 0.455 3.545 15 O -0.554 6.554 16 N -0.594 5.594 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.040 3.960 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.271 1.271 25 C -0.010 4.010 26 S 0.154 5.846 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.397 0.603 34 H 0.135 0.865 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.071 0.929 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.940 14.503 -13.022 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.207 4.207 3 N -0.195 5.195 4 C 0.018 3.982 5 C -0.151 4.151 6 C -0.427 4.427 7 C 0.386 3.614 8 O -0.393 6.393 9 N -0.365 5.365 10 C 0.015 3.985 11 C -0.144 4.144 12 N -0.155 5.155 13 C -0.125 4.125 14 C 0.240 3.760 15 O -0.434 6.434 16 N -0.234 5.234 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.522 5.522 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.140 4.140 26 S 0.411 5.589 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.232 0.768 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -24.312 14.867 -12.851 31.262 hybrid contribution -1.811 -1.208 0.146 2.182 sum -26.123 13.659 -12.705 32.100 Atomic orbital electron populations 1.20568 0.84503 1.04826 1.04417 1.27419 1.02164 0.90974 1.00145 1.66121 1.04482 1.31201 1.17691 1.20723 0.89860 0.93765 0.93866 1.20708 0.96992 0.93501 1.03879 1.25430 0.97806 0.97242 1.22259 1.16665 0.85974 0.82567 0.76146 1.90819 1.44226 1.54700 1.49530 1.45864 1.08928 1.06263 1.75395 1.22775 0.82669 0.95560 0.97538 1.24339 0.96195 0.94606 0.99225 1.68807 1.38502 1.03119 1.05022 1.22547 0.97982 0.92640 0.99286 1.19525 0.88519 0.83358 0.84632 1.90582 1.39445 1.48668 1.64748 1.42209 1.23580 1.14493 1.43099 1.19427 1.01729 1.01816 1.20256 0.86285 1.25038 0.97277 0.97281 0.96666 1.69620 1.30426 1.23003 1.29156 0.86665 0.81714 0.82015 0.78908 1.19627 1.20203 1.19639 1.24440 0.97596 0.95303 0.96633 1.83832 0.96650 1.11637 1.66775 0.88955 0.89577 0.88720 0.89909 0.90616 0.87926 0.76844 0.84721 0.88530 0.91113 0.89039 0.92116 0.79828 0.91634 0.91130 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.46 36.00 0.38 0.08 16 2 C 0.07 0.50 7.39 -13.29 -0.10 0.40 16 3 N -0.48 -4.76 10.50 -7.71 -0.08 -4.84 16 4 C 0.16 1.64 6.79 -83.89 -0.57 1.07 16 5 C -0.09 -0.88 9.70 36.00 0.35 -0.53 16 6 C -0.30 -3.05 6.48 -37.10 -0.24 -3.29 16 7 C 0.60 6.90 7.78 -12.85 -0.10 6.80 16 8 O -0.52 -7.38 13.86 5.20 0.07 -7.31 16 9 N -0.71 -6.85 5.38 -54.85 -0.30 -7.15 16 10 C 0.12 1.35 4.59 -67.72 -0.31 1.04 16 11 C -0.01 -0.15 7.45 -7.54 -0.06 -0.20 16 12 N -0.43 -6.68 5.82 -246.09 -1.43 -8.11 16 13 C 0.01 0.13 5.30 -4.97 -0.03 0.10 16 14 C 0.45 10.40 7.85 -10.98 -0.09 10.31 16 15 O -0.55 -15.26 16.01 5.55 0.09 -15.17 16 16 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 17 C -0.30 -8.64 10.16 -14.94 -0.15 -8.79 16 18 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 19 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -25.86 13.96 55.50 0.77 -25.09 16 21 Si 0.88 19.25 27.74 -169.99 -4.71 14.54 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 C -0.01 -0.13 7.52 -7.54 -0.06 -0.19 16 26 S 0.15 1.04 22.31 -107.50 -2.40 -1.35 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.12 6.01 -51.93 -0.31 0.81 16 33 H 0.40 2.86 7.94 -40.82 -0.32 2.54 16 34 H 0.14 1.72 7.45 -51.93 -0.39 1.33 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 37 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.06 0.82 7.30 -51.93 -0.38 0.45 16 39 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 0.87 7.42 -51.93 -0.39 0.48 16 42 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -36.30 368.91 -8.92 -45.21 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.37 Total: 10.09 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.07 Total: 7.82 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -1.09 Total: -59.39 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: 0.16 Total: -22.48 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.54 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.40 Total: -1.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.30 -8.92 -45.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318086658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.405 kcal (2) G-P(sol) polarization free energy of solvation -36.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds