Wall clock time and date at job start Tue Mar 31 2020 20:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29436 * 124.80543 * 2 1 4 4 C 1.30940 * 117.36506 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.90417 * 180.02562 * 4 3 2 6 6 C 1.35663 * 114.19175 * 0.02562 * 4 3 2 7 7 C 1.46683 * 126.13160 * 180.02562 * 6 4 3 8 8 O 1.21691 * 120.00052 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00289 * 180.02562 * 7 6 4 10 10 C 1.46500 * 120.00092 * 180.02562 * 9 7 6 11 11 C 1.53514 * 114.16894 * 204.99717 * 10 9 7 12 12 N 1.47482 * 87.93039 * 220.32940 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 S 1.70950 * 124.80491 * 180.27815 * 2 1 3 27 27 H 1.09007 * 109.47224 * 90.02309 * 1 2 3 28 28 H 1.08998 * 109.47340 * 210.02368 * 1 2 3 29 29 H 1.09006 * 109.47277 * 330.02668 * 1 2 3 30 30 H 1.09002 * 109.47272 * 270.00061 * 5 4 3 31 31 H 1.09005 * 109.47326 * 29.99873 * 5 4 3 32 32 H 1.08995 * 109.47263 * 149.99767 * 5 4 3 33 33 H 0.97003 * 119.99729 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.38392 * 338.07920 * 10 9 7 35 35 H 1.08994 * 113.47382 * 105.55784 * 11 10 9 36 36 H 1.09003 * 113.47448 * 335.09691 * 11 10 9 37 37 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 38 38 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 39 39 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 40 40 H 0.96993 * 120.00255 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 42 42 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8932 0.0005 5 6 4.5197 2.0418 0.0012 6 6 3.9351 -0.4058 0.0004 7 6 5.3188 -0.8926 0.0015 8 8 6.2425 -0.1003 0.0020 9 7 5.5673 -2.2172 0.0007 10 6 6.9493 -2.7033 0.0023 11 6 7.1219 -4.1088 -0.5904 12 7 8.0860 -4.3880 0.4902 13 6 7.8966 -5.7419 1.0278 14 6 9.0410 -6.0818 1.9475 15 8 9.9270 -5.2753 2.1368 16 7 9.0796 -7.2816 2.5604 17 6 10.1205 -7.5905 3.3975 18 1 10.9097 -6.8727 3.5654 19 6 10.1605 -8.8275 4.0289 20 7 11.1579 -9.1236 4.8317 21 14 8.7957 -10.0694 3.7378 22 1 9.1467 -10.9279 2.5782 23 1 8.6294 -10.9148 4.9474 24 1 7.5259 -9.3525 3.4567 25 6 7.3726 -3.3898 1.3085 26 16 2.4827 -1.4037 -0.0068 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8903 0.5134 30 1 4.7554 2.3189 -1.0264 31 1 4.0764 2.8948 0.5150 32 1 5.4330 1.7425 0.5153 33 1 4.8310 -2.8487 -0.0001 34 1 7.6659 -1.9710 -0.3695 35 1 7.5707 -4.1090 -1.5837 36 1 6.2192 -4.7173 -0.5349 37 1 7.8655 -6.4580 0.2065 38 1 6.9594 -5.7847 1.5828 39 1 8.3709 -7.9263 2.4092 40 1 11.1860 -9.9873 5.2722 41 1 6.5369 -3.8064 1.8708 42 1 8.0340 -2.7807 1.9246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318086658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:25 Heat of formation + Delta-G solvation = -9.670372 kcal Electronic energy + Delta-G solvation = -25664.614162 eV Core-core repulsion = 21771.923477 eV Total energy + Delta-G solvation = -3892.690686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89044 -41.22741 -40.15081 -39.45862 -36.01473 -35.29295 -34.01562 -33.75774 -31.53670 -30.21272 -29.40420 -27.32399 -26.98611 -25.17265 -23.94347 -22.92940 -21.58376 -21.28135 -20.38585 -20.28295 -19.08577 -17.99490 -17.81472 -17.51282 -16.81820 -16.71257 -16.57772 -16.22662 -15.91211 -15.51085 -15.28816 -15.10779 -14.85777 -14.56539 -14.45870 -14.17973 -14.08094 -13.90158 -13.71849 -13.40200 -13.25942 -13.08727 -12.98424 -12.78657 -12.43508 -12.41287 -12.39879 -11.96625 -11.88100 -11.50430 -11.30218 -10.80660 -10.63639 -10.48354 -10.25067 -10.23190 -9.82613 -9.74248 -8.40878 -6.02448 -0.86477 0.10452 0.46054 1.29251 1.29563 1.36763 1.45422 1.82104 1.97004 1.97510 2.23835 2.69597 2.97704 3.13285 3.19643 3.42857 3.64700 3.71622 3.86896 4.00905 4.04779 4.16247 4.25543 4.33475 4.44267 4.52363 4.62810 4.65061 4.66635 4.69118 4.77770 4.84498 4.88086 5.10537 5.21569 5.29100 5.32835 5.53494 5.87741 5.98978 6.26311 6.55982 6.60145 6.89004 6.96969 7.40196 7.99260 8.77102 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002055 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.764948 B =13621.514936 C =14452.566734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.066 3.934 3 N -0.509 5.509 4 C 0.143 3.857 5 C -0.090 4.090 6 C -0.335 4.335 7 C 0.598 3.402 8 O -0.555 6.555 9 N -0.698 5.698 10 C 0.131 3.869 11 C 0.005 3.995 12 N -0.476 5.476 13 C 0.022 3.978 14 C 0.449 3.551 15 O -0.613 6.613 16 N -0.592 5.592 17 C -0.329 4.329 18 H 0.050 0.950 19 C -0.019 4.019 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.256 1.256 23 H -0.276 1.276 24 H -0.227 1.227 25 C -0.014 4.014 26 S 0.221 5.779 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.391 0.609 40 H 0.279 0.721 41 H 0.092 0.908 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.276 12.184 -14.941 36.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.208 4.208 3 N -0.225 5.225 4 C 0.005 3.995 5 C -0.148 4.148 6 C -0.459 4.459 7 C 0.385 3.615 8 O -0.435 6.435 9 N -0.350 5.350 10 C 0.025 3.975 11 C -0.124 4.124 12 N -0.199 5.199 13 C -0.110 4.110 14 C 0.237 3.763 15 O -0.497 6.497 16 N -0.234 5.234 17 C -0.459 4.459 18 H 0.068 0.932 19 C -0.217 4.217 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.181 1.181 23 H -0.201 1.201 24 H -0.150 1.150 25 C -0.144 4.144 26 S 0.478 5.522 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.250 0.750 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.705 12.530 -14.796 35.473 hybrid contribution -0.114 -0.379 0.769 0.864 sum -29.820 12.151 -14.028 35.123 Atomic orbital electron populations 1.20811 0.81788 1.06068 1.05858 1.28166 1.03807 0.90917 0.97903 1.66174 1.04237 1.32609 1.19502 1.20850 0.90472 0.94162 0.94060 1.20629 0.96396 0.93931 1.03880 1.25361 0.98469 0.98194 1.23860 1.16928 0.86362 0.82743 0.75434 1.90802 1.45658 1.55728 1.51284 1.45638 1.08664 1.05978 1.74674 1.22416 0.83099 0.95849 0.96173 1.24357 0.96538 0.93495 0.97977 1.68717 1.41297 1.02933 1.06954 1.22499 0.95580 0.93866 0.99071 1.20987 0.89429 0.81939 0.83951 1.90560 1.42300 1.50334 1.66474 1.42019 1.23034 1.15637 1.42738 1.18981 1.02391 1.01544 1.22943 0.93160 1.26196 1.00759 0.99478 0.95312 1.69817 1.33381 1.24143 1.30405 0.85307 0.78609 0.78066 0.79130 1.18055 1.20136 1.15049 1.24482 0.97371 0.95240 0.97319 1.83465 0.93696 1.09616 1.65391 0.87205 0.87208 0.88586 0.89652 0.89863 0.89749 0.75004 0.86925 0.87461 0.87105 0.85468 0.88301 0.77366 0.91165 0.89001 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.31 10.46 71.23 0.75 0.43 16 2 C 0.07 0.80 7.39 88.46 0.65 1.46 16 3 N -0.51 -9.53 10.50 -178.30 -1.87 -11.40 16 4 C 0.14 2.98 6.79 42.09 0.29 3.27 16 5 C -0.09 -1.80 9.70 71.23 0.69 -1.11 16 6 C -0.33 -6.39 6.48 23.88 0.15 -6.23 16 7 C 0.60 13.53 7.78 86.45 0.67 14.20 16 8 O -0.55 -16.63 13.86 -4.32 -0.06 -16.69 16 9 N -0.70 -12.01 5.38 -445.65 -2.40 -14.41 16 10 C 0.13 2.79 4.59 45.45 0.21 3.00 16 11 C 0.01 0.09 7.45 83.58 0.62 0.71 16 12 N -0.48 -13.83 5.82 -932.48 -5.43 -19.25 16 13 C 0.02 0.61 5.30 85.56 0.45 1.07 16 14 C 0.45 20.45 7.85 87.66 0.69 21.13 16 15 O -0.61 -35.42 16.01 -3.07 -0.05 -35.47 16 16 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 17 C -0.33 -19.51 10.16 84.04 0.85 -18.65 16 18 H 0.05 3.59 7.39 -2.91 -0.02 3.56 16 19 C -0.02 -1.07 5.50 84.92 0.47 -0.61 16 20 N -0.94 -56.98 13.96 21.66 0.30 -56.67 16 21 Si 0.97 38.17 27.74 68.60 1.90 40.07 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 23 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.23 -7.31 6.52 99.48 0.65 -6.66 16 25 C -0.01 -0.37 7.52 83.58 0.63 0.26 16 26 S 0.22 2.29 22.31 -56.49 -1.26 1.03 16 27 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 28 H 0.11 -0.10 8.14 -2.39 -0.02 -0.11 16 29 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.08 2.01 6.01 -2.39 -0.01 1.99 16 33 H 0.41 4.40 7.94 -92.71 -0.74 3.66 16 34 H 0.11 2.96 7.45 -2.39 -0.02 2.95 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 1.10 7.90 -2.39 -0.02 1.08 16 37 H 0.13 2.78 8.08 -2.39 -0.02 2.76 16 38 H 0.10 2.12 7.30 -2.39 -0.02 2.10 16 39 H 0.39 14.75 5.76 -92.71 -0.53 14.21 16 40 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.09 2.01 7.42 -2.39 -0.02 1.99 16 42 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -89.27 368.91 -3.54 -92.81 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: -0.24 Total: 30.41 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 7.12 Total: 18.93 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -10.96 Total: -131.08 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.11 Total: -52.16 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.90 Total: 40.07 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.26 Total: 1.03 kcal Total: -89.27 -3.54 -92.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318086658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.137 kcal (2) G-P(sol) polarization free energy of solvation -89.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds