Wall clock time and date at job start Tue Mar 31 2020 20:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30729 * 126.27373 * 2 1 4 4 N 1.28646 * 110.33838 * 180.02562 * 3 2 1 5 5 C 1.32193 * 109.56911 * 0.02562 * 4 3 2 6 6 C 1.41049 * 133.25239 * 179.97438 * 5 4 3 7 7 C 1.35633 * 119.40442 * 180.02562 * 6 5 4 8 8 C 1.41832 * 119.59831 * 0.02562 * 7 6 5 9 9 C 1.47572 * 119.98081 * 180.02562 * 8 7 6 10 10 O 1.21604 * 119.99625 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00056 * 359.97438 * 9 8 7 12 12 C 1.39930 * 119.99645 * 175.48354 * 11 9 8 13 13 C 1.38936 * 120.00091 * 35.14848 * 12 11 9 14 14 C 1.37998 * 119.99598 * 180.02562 * 13 12 11 15 15 C 1.38916 * 120.00274 * 0.02562 * 14 13 12 16 16 O 1.35770 * 119.99924 * 179.97438 * 15 14 13 17 17 C 1.34813 * 117.00111 * 5.34360 * 16 15 14 18 18 H 1.08005 * 119.99500 * 354.97066 * 17 16 15 19 19 C 1.38624 * 120.00331 * 174.96426 * 17 16 15 20 20 N 1.31576 * 120.00334 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00153 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47149 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46766 * 120.00135 * 21 19 17 24 24 H 1.48494 * 109.47520 * 240.00040 * 21 19 17 25 25 C 1.38917 * 120.00401 * 0.23247 * 15 14 13 26 26 C 1.37997 * 120.00206 * 359.49148 * 25 15 14 27 27 C 1.36513 * 120.03525 * 0.26591 * 8 7 6 28 28 N 1.35855 * 120.37797 * 359.45514 * 27 8 7 29 29 H 1.09002 * 109.47389 * 269.97120 * 1 2 3 30 30 H 1.09002 * 109.47268 * 29.96975 * 1 2 3 31 31 H 1.08999 * 109.47525 * 149.97085 * 1 2 3 32 32 H 1.07993 * 120.30273 * 0.05721 * 6 5 4 33 33 H 1.08000 * 120.20681 * 179.97438 * 7 6 5 34 34 H 0.96996 * 120.00279 * 355.48842 * 11 9 8 35 35 H 1.07998 * 120.00067 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.00317 * 179.97438 * 14 13 12 37 37 H 0.96995 * 120.00293 * 179.97438 * 20 19 17 38 38 H 1.08001 * 119.99480 * 179.75043 * 25 15 14 39 39 H 1.08003 * 120.00303 * 180.26018 * 26 25 15 40 40 H 1.07997 * 119.81073 * 179.70517 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5174 0.7007 -0.0005 5 6 3.6012 -0.6185 -0.0015 6 6 4.6877 -1.5180 -0.0028 7 6 4.4472 -2.8528 -0.0041 8 6 3.1093 -3.3235 -0.0046 9 6 2.8379 -4.7741 -0.0054 10 8 1.6909 -5.1780 -0.0063 11 7 3.8612 -5.6511 -0.0061 12 6 3.6063 -7.0237 0.0886 13 6 2.4780 -7.5641 -0.5159 14 6 2.2264 -8.9177 -0.4220 15 6 3.1008 -9.7399 0.2773 16 8 2.8530 -11.0715 0.3700 17 6 1.8044 -11.5491 -0.3299 18 1 1.1570 -10.8693 -0.8638 19 6 1.5572 -12.9127 -0.3643 20 7 2.3456 -13.7409 0.2866 21 14 0.1046 -13.5745 -1.3346 22 1 -0.6202 -12.4460 -1.9721 23 1 0.5931 -14.5045 -2.3843 24 1 -0.8133 -14.2991 -0.4195 25 6 4.2261 -9.1988 0.8862 26 6 4.4810 -7.8462 0.7876 27 6 2.0725 -2.4355 -0.0093 28 7 2.3130 -1.0984 -0.0023 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.7020 -1.1472 -0.0023 33 1 5.2694 -3.5531 -0.0055 34 1 4.7744 -5.3309 -0.0722 35 1 1.7975 -6.9246 -1.0585 36 1 1.3492 -9.3377 -0.8915 37 1 2.1725 -14.6950 0.2628 38 1 4.9038 -9.8376 1.4332 39 1 5.3581 -7.4262 1.2575 40 1 1.0551 -2.7979 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325578940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:16 Heat of formation + Delta-G solvation = 84.127694 kcal Electronic energy + Delta-G solvation = -26863.478013 eV Core-core repulsion = 22839.410766 eV Total energy + Delta-G solvation = -4024.067248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.03643 -40.62878 -39.02063 -38.11308 -36.61055 -35.02730 -34.15375 -32.47038 -32.15322 -31.23939 -30.31235 -28.23519 -27.89519 -25.66348 -24.96270 -24.04329 -22.60507 -22.14464 -21.71528 -20.55837 -18.81258 -18.32833 -17.87595 -17.60366 -17.16592 -16.85673 -16.42701 -15.49572 -15.32857 -15.19667 -14.57981 -14.48724 -14.24334 -13.94919 -13.72246 -13.67558 -13.65152 -13.16104 -12.99849 -12.87364 -12.65225 -12.52009 -12.10270 -11.87695 -11.70693 -11.65129 -11.59531 -11.11329 -10.99750 -10.85229 -10.47759 -10.13732 -10.01895 -9.84764 -9.30403 -8.80128 -8.57427 -8.32139 -7.07136 -6.52330 -4.09863 -0.07179 0.38176 1.65393 1.86395 2.08486 2.19672 2.57429 2.93392 3.07278 3.10537 3.16040 3.16555 3.50278 3.89549 3.91231 3.99580 4.11102 4.18683 4.24725 4.46278 4.76879 4.78654 4.93863 5.02067 5.15784 5.17082 5.27104 5.33681 5.44382 5.52212 5.55661 5.63226 5.73062 5.96753 6.05280 6.19912 6.27511 6.59160 6.72656 6.87039 6.95713 7.20040 7.33695 7.44343 7.63858 7.92500 8.04289 8.05799 8.93350 9.61270 10.65286 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.002024 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.541888 B =13831.269818 C =14796.428961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.152 3.848 3 N -0.249 5.249 4 N -0.286 5.286 5 C 0.198 3.802 6 C -0.077 4.077 7 C -0.070 4.070 8 C -0.147 4.147 9 C 0.560 3.440 10 O -0.520 6.520 11 N -0.645 5.645 12 C 0.025 3.975 13 C -0.060 4.060 14 C -0.222 4.222 15 C 0.149 3.851 16 O -0.174 6.174 17 C -0.391 4.391 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.178 4.178 26 C -0.087 4.087 27 C 0.141 3.859 28 N -0.395 5.395 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.402 0.598 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.270 0.730 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 21.893 -1.270 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 N -0.088 5.088 4 N -0.130 5.130 5 C -0.052 4.052 6 C -0.098 4.098 7 C -0.094 4.094 8 C -0.155 4.155 9 C 0.346 3.654 10 O -0.397 6.397 11 N -0.289 5.289 12 C -0.067 4.067 13 C -0.080 4.080 14 C -0.242 4.242 15 C 0.095 3.905 16 O -0.076 6.076 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.198 4.198 26 C -0.108 4.108 27 C 0.015 3.985 28 N -0.076 5.076 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.238 0.762 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.516 22.841 -1.091 22.918 hybrid contribution -0.547 -1.476 -0.476 1.645 sum 0.969 21.365 -1.567 21.444 Atomic orbital electron populations 1.20300 0.82609 1.05142 1.04603 1.25092 0.97174 0.80530 1.08207 1.74214 0.96561 1.23303 1.14719 1.74926 1.10893 1.06000 1.21218 1.22492 0.84944 0.92803 1.04931 1.20178 0.97423 0.90560 1.01643 1.21231 0.95761 0.95618 0.96823 1.19520 0.93213 0.94209 1.08523 1.17597 0.85523 0.84431 0.77800 1.90835 1.20708 1.79072 1.49076 1.42946 1.09092 1.05142 1.71683 1.17182 1.00839 0.81042 1.07665 1.20837 0.95896 0.94377 0.96888 1.21107 1.02797 0.93125 1.07155 1.19438 0.92668 0.85402 0.93040 1.83972 1.46539 1.16580 1.60556 1.21401 1.04364 0.91760 1.29170 0.88862 1.25309 0.98967 0.94842 0.97418 1.70049 1.36648 1.03582 1.39176 0.85633 0.79597 0.79223 0.78924 1.19015 1.20090 1.20085 1.20003 0.98526 0.94258 1.07023 1.20348 0.99074 0.92907 0.98427 1.21738 1.02196 0.79263 0.95283 1.43701 1.09186 1.06806 1.47879 0.89111 0.88088 0.89897 0.81783 0.82993 0.76166 0.85666 0.85092 0.91969 0.85914 0.86592 0.79624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.40 36.00 0.37 0.01 16 2 C 0.15 1.49 8.14 -154.12 -1.25 0.23 16 3 N -0.25 -3.14 12.18 32.96 0.40 -2.74 16 4 N -0.29 -3.73 12.29 31.19 0.38 -3.35 16 5 C 0.20 2.11 7.92 -155.95 -1.23 0.87 16 6 C -0.08 -0.56 10.09 -39.45 -0.40 -0.96 16 7 C -0.07 -0.45 9.53 -39.14 -0.37 -0.82 16 8 C -0.15 -1.31 5.84 -105.34 -0.61 -1.93 16 9 C 0.56 6.72 7.60 -12.46 -0.09 6.63 16 10 O -0.52 -8.11 13.71 5.27 0.07 -8.04 16 11 N -0.64 -7.41 5.28 -10.75 -0.06 -7.46 16 12 C 0.02 0.39 6.30 -83.64 -0.53 -0.13 16 13 C -0.06 -1.11 8.69 -39.41 -0.34 -1.45 16 14 C -0.22 -4.71 9.16 -39.42 -0.36 -5.07 16 15 C 0.15 3.43 6.65 -39.08 -0.26 3.17 16 16 O -0.17 -4.77 9.75 0.03 0.00 -4.77 16 17 C -0.39 -10.61 9.48 30.88 0.29 -10.32 16 18 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 21 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 C -0.18 -3.46 9.98 -39.42 -0.39 -3.86 16 26 C -0.09 -1.38 9.96 -39.41 -0.39 -1.77 16 27 C 0.14 1.24 10.45 -16.39 -0.17 1.07 16 28 N -0.40 -3.88 2.94 -59.36 -0.17 -4.05 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.15 0.49 6.45 -52.49 -0.34 0.15 16 34 H 0.40 3.00 6.86 -40.82 -0.28 2.72 16 35 H 0.13 2.26 6.22 -52.49 -0.33 1.93 16 36 H 0.13 2.82 5.63 -52.49 -0.30 2.52 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.19 1.39 7.56 -52.49 -0.40 0.99 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -35.10 351.21 -7.77 -42.87 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.58 Total: 4.40 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -5.85 Total: -13.37 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 1.31 Total: -41.42 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.10 -7.77 -42.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325578940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.998 kcal (2) G-P(sol) polarization free energy of solvation -35.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds