Wall clock time and date at job start Tue Mar 31 2020 20:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30729 * 126.27373 * 2 1 4 4 N 1.28646 * 110.33838 * 180.02562 * 3 2 1 5 5 C 1.32193 * 109.56911 * 0.02562 * 4 3 2 6 6 C 1.41049 * 133.25239 * 179.97438 * 5 4 3 7 7 C 1.35633 * 119.40442 * 180.02562 * 6 5 4 8 8 C 1.41832 * 119.59831 * 0.02562 * 7 6 5 9 9 C 1.47572 * 119.98081 * 180.02562 * 8 7 6 10 10 O 1.21604 * 119.99625 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00056 * 359.97438 * 9 8 7 12 12 C 1.39930 * 119.99645 * 175.48354 * 11 9 8 13 13 C 1.38936 * 120.00091 * 35.14848 * 12 11 9 14 14 C 1.37998 * 119.99598 * 180.02562 * 13 12 11 15 15 C 1.38916 * 120.00274 * 0.02562 * 14 13 12 16 16 O 1.35770 * 119.99924 * 179.97438 * 15 14 13 17 17 C 1.34813 * 117.00111 * 5.34360 * 16 15 14 18 18 H 1.08005 * 119.99500 * 354.97066 * 17 16 15 19 19 C 1.38624 * 120.00331 * 174.96426 * 17 16 15 20 20 N 1.31576 * 120.00334 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00153 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47149 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46766 * 120.00135 * 21 19 17 24 24 H 1.48494 * 109.47520 * 240.00040 * 21 19 17 25 25 C 1.38917 * 120.00401 * 0.23247 * 15 14 13 26 26 C 1.37997 * 120.00206 * 359.49148 * 25 15 14 27 27 C 1.36513 * 120.03525 * 0.26591 * 8 7 6 28 28 N 1.35855 * 120.37797 * 359.45514 * 27 8 7 29 29 H 1.09002 * 109.47389 * 269.97120 * 1 2 3 30 30 H 1.09002 * 109.47268 * 29.96975 * 1 2 3 31 31 H 1.08999 * 109.47525 * 149.97085 * 1 2 3 32 32 H 1.07993 * 120.30273 * 0.05721 * 6 5 4 33 33 H 1.08000 * 120.20681 * 179.97438 * 7 6 5 34 34 H 0.96996 * 120.00279 * 355.48842 * 11 9 8 35 35 H 1.07998 * 120.00067 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.00317 * 179.97438 * 14 13 12 37 37 H 0.96995 * 120.00293 * 179.97438 * 20 19 17 38 38 H 1.08001 * 119.99480 * 179.75043 * 25 15 14 39 39 H 1.08003 * 120.00303 * 180.26018 * 26 25 15 40 40 H 1.07997 * 119.81073 * 179.70517 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5174 0.7007 -0.0005 5 6 3.6012 -0.6185 -0.0015 6 6 4.6877 -1.5180 -0.0028 7 6 4.4472 -2.8528 -0.0041 8 6 3.1093 -3.3235 -0.0046 9 6 2.8379 -4.7741 -0.0054 10 8 1.6909 -5.1780 -0.0063 11 7 3.8612 -5.6511 -0.0061 12 6 3.6063 -7.0237 0.0886 13 6 2.4780 -7.5641 -0.5159 14 6 2.2264 -8.9177 -0.4220 15 6 3.1008 -9.7399 0.2773 16 8 2.8530 -11.0715 0.3700 17 6 1.8044 -11.5491 -0.3299 18 1 1.1570 -10.8693 -0.8638 19 6 1.5572 -12.9127 -0.3643 20 7 2.3456 -13.7409 0.2866 21 14 0.1046 -13.5745 -1.3346 22 1 -0.6202 -12.4460 -1.9721 23 1 0.5931 -14.5045 -2.3843 24 1 -0.8133 -14.2991 -0.4195 25 6 4.2261 -9.1988 0.8862 26 6 4.4810 -7.8462 0.7876 27 6 2.0725 -2.4355 -0.0093 28 7 2.3130 -1.0984 -0.0023 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.7020 -1.1472 -0.0023 33 1 5.2694 -3.5531 -0.0055 34 1 4.7744 -5.3309 -0.0722 35 1 1.7975 -6.9246 -1.0585 36 1 1.3492 -9.3377 -0.8915 37 1 2.1725 -14.6950 0.2628 38 1 4.9038 -9.8376 1.4332 39 1 5.3581 -7.4262 1.2575 40 1 1.0551 -2.7979 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325578940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:15 Heat of formation + Delta-G solvation = 61.876543 kcal Electronic energy + Delta-G solvation = -26864.442896 eV Core-core repulsion = 22839.410766 eV Total energy + Delta-G solvation = -4025.032130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.117 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.77149 -41.73634 -40.50939 -39.08509 -38.05386 -35.86398 -35.26758 -34.18473 -33.06855 -31.93761 -31.78442 -29.64555 -28.52715 -27.37552 -26.03717 -24.74194 -23.99585 -23.20713 -22.73606 -21.71518 -20.08951 -19.53814 -19.21903 -18.45762 -18.19945 -17.90462 -17.59165 -16.54123 -16.37124 -16.19768 -15.98244 -15.71026 -15.48515 -15.31244 -15.10195 -14.64435 -14.53698 -14.22656 -14.09682 -13.66241 -13.56381 -13.54457 -13.27225 -13.23548 -13.16451 -12.80489 -12.72962 -12.42245 -12.21617 -12.10711 -11.74907 -11.46066 -11.31124 -10.93590 -10.79257 -10.54796 -9.82029 -9.26209 -8.62698 -8.46633 -6.13051 -0.77364 -0.25717 0.53493 0.57999 0.94567 1.25856 1.36206 1.43448 1.53673 1.72564 1.96449 2.18154 2.32897 2.82900 2.86677 3.16022 3.27803 3.31717 3.42117 3.53522 3.56993 3.61958 4.05633 4.14145 4.18242 4.30573 4.50189 4.57117 4.61883 4.67027 4.72322 4.73913 4.81795 4.88180 4.98245 5.08475 5.13570 5.18521 5.34563 5.44358 5.57290 5.60950 5.71926 6.03218 6.14815 6.40166 6.98300 7.04805 7.28853 7.78089 8.76158 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.002024 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.541888 B =13831.269818 C =14796.428961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.155 3.845 3 N -0.288 5.288 4 N -0.329 5.329 5 C 0.189 3.811 6 C -0.081 4.081 7 C -0.051 4.051 8 C -0.148 4.148 9 C 0.567 3.433 10 O -0.556 6.556 11 N -0.633 5.633 12 C 0.059 3.941 13 C -0.072 4.072 14 C -0.231 4.231 15 C 0.108 3.892 16 O -0.227 6.227 17 C -0.411 4.411 18 H 0.099 0.901 19 C -0.022 4.022 20 N -0.917 5.917 21 Si 1.015 2.985 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.269 1.269 25 C -0.182 4.182 26 C -0.071 4.071 27 C 0.143 3.857 28 N -0.401 5.401 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.428 0.572 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.273 0.727 38 H 0.128 0.872 39 H 0.171 0.829 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.758 24.145 -1.558 24.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 N -0.126 5.126 4 N -0.172 5.172 5 C -0.061 4.061 6 C -0.102 4.102 7 C -0.075 4.075 8 C -0.156 4.156 9 C 0.356 3.644 10 O -0.435 6.435 11 N -0.280 5.280 12 C -0.035 4.035 13 C -0.091 4.091 14 C -0.251 4.251 15 C 0.057 3.943 16 O -0.134 6.134 17 C -0.487 4.487 18 H 0.116 0.884 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.835 3.165 22 H -0.178 1.178 23 H -0.192 1.192 24 H -0.194 1.194 25 C -0.202 4.202 26 C -0.090 4.090 27 C 0.018 3.982 28 N -0.081 5.081 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.209 0.791 33 H 0.210 0.790 34 H 0.269 0.731 35 H 0.149 0.851 36 H 0.134 0.866 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.188 0.812 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.455 25.212 -1.385 25.370 hybrid contribution -0.725 -1.745 -0.348 1.921 sum 1.730 23.468 -1.733 23.595 Atomic orbital electron populations 1.20537 0.79851 1.06421 1.05877 1.25838 0.98580 0.79998 1.06365 1.74124 0.97003 1.24865 1.16581 1.74814 1.11407 1.07589 1.23378 1.23070 0.86168 0.92673 1.04187 1.20559 0.97738 0.90326 1.01557 1.21566 0.95453 0.95868 0.94660 1.19267 0.94589 0.92048 1.09658 1.17925 0.84785 0.85500 0.76232 1.90842 1.22385 1.79894 1.50354 1.42798 1.10658 1.03025 1.71476 1.17274 0.98781 0.83182 1.04213 1.20952 0.97382 0.93158 0.97653 1.21105 1.02316 0.94378 1.07291 1.20003 0.94697 0.84505 0.95075 1.83937 1.47687 1.18853 1.62914 1.21799 1.04872 0.92466 1.29547 0.88371 1.26516 1.02069 0.94823 0.98520 1.70178 1.39397 1.03908 1.42084 0.84568 0.75808 0.78663 0.77441 1.17781 1.19245 1.19383 1.20345 0.97390 0.96145 1.06314 1.20800 1.00250 0.91047 0.96917 1.21934 1.02949 0.78915 0.94449 1.43807 1.09112 1.07065 1.48127 0.87705 0.87213 0.88178 0.79082 0.79001 0.73120 0.85149 0.86619 0.91829 0.85429 0.81152 0.78675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.40 71.23 0.74 0.14 16 2 C 0.16 2.85 8.14 137.67 1.12 3.97 16 3 N -0.29 -7.20 12.18 -49.62 -0.60 -7.81 16 4 N -0.33 -8.40 12.29 -55.23 -0.68 -9.08 16 5 C 0.19 3.66 7.92 134.12 1.06 4.72 16 6 C -0.08 -0.87 10.09 22.36 0.23 -0.64 16 7 C -0.05 -0.39 9.53 22.56 0.21 -0.18 16 8 C -0.15 -2.03 5.84 -20.33 -0.12 -2.15 16 9 C 0.57 11.31 7.60 86.71 0.66 11.96 16 10 O -0.56 -15.82 13.71 -4.04 -0.06 -15.88 16 11 N -0.63 -11.22 5.28 -306.18 -1.62 -12.83 16 12 C 0.06 1.64 6.30 38.18 0.24 1.88 16 13 C -0.07 -2.54 8.69 22.38 0.19 -2.34 16 14 C -0.23 -10.01 9.16 22.38 0.20 -9.80 16 15 C 0.11 5.12 6.65 22.60 0.15 5.27 16 16 O -0.23 -13.25 9.75 -22.80 -0.22 -13.47 16 17 C -0.41 -23.54 9.48 67.91 0.64 -22.89 16 18 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 19 C -0.02 -1.21 5.49 84.82 0.47 -0.74 16 20 N -0.92 -55.23 13.67 21.61 0.30 -54.93 16 21 Si 1.02 42.47 29.55 68.60 2.03 44.50 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 24 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 25 C -0.18 -6.88 9.98 22.38 0.22 -6.65 16 26 C -0.07 -1.92 9.96 22.38 0.22 -1.70 16 27 C 0.14 2.11 10.45 83.67 0.87 2.98 16 28 N -0.40 -7.05 2.94 -341.72 -1.00 -8.06 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.19 -0.15 6.45 -2.91 -0.02 -0.17 16 34 H 0.43 3.44 6.86 -92.71 -0.64 2.80 16 35 H 0.13 4.51 6.22 -2.91 -0.02 4.49 16 36 H 0.12 5.24 5.63 -2.91 -0.02 5.22 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.20 2.42 7.56 -2.91 -0.02 2.40 16 Total: -1.00 -84.32 351.21 5.76 -78.56 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.49 Total: 15.17 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 7.12 Total: -16.17 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.61 Total: -92.71 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.28 Total: -29.35 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -84.32 5.76 -78.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325578940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.441 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds