Wall clock time and date at job start Tue Mar 31 2020 20:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29424 * 125.69322 * 2 1 4 4 N 1.26394 * 116.47224 * 180.02562 * 3 2 1 5 5 C 1.29416 * 116.48217 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.69898 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47090 * 90.01954 * 6 5 4 8 8 C 1.34775 * 119.99505 * 179.97438 * 7 6 5 9 9 O 1.21352 * 120.00141 * 359.97438 * 8 7 6 10 10 C 1.49448 * 119.99800 * 180.02562 * 8 7 6 11 11 O 1.21344 * 120.00308 * 353.23338 * 10 8 7 12 12 N 1.34784 * 120.00133 * 173.23049 * 10 8 7 13 13 C 1.46929 * 120.62828 * 351.35143 * 12 10 8 14 14 C 1.53191 * 108.89438 * 233.55930 * 13 12 10 15 15 C 1.53070 * 109.29330 * 305.58156 * 14 13 12 16 16 C 1.53040 * 109.66092 * 61.15257 * 15 14 13 17 17 H 1.09000 * 109.49788 * 58.65045 * 16 15 14 18 18 C 1.50699 * 109.49627 * 178.74544 * 16 15 14 19 19 H 1.07993 * 120.00318 * 359.84311 * 18 16 15 20 20 C 1.37881 * 120.00047 * 179.83697 * 18 16 15 21 21 N 1.31523 * 119.99840 * 0.02562 * 20 18 16 22 22 Si 1.86793 * 120.00310 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47239 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47269 * 120.00168 * 22 20 18 25 25 H 1.48505 * 109.47026 * 240.00119 * 22 20 18 26 26 C 1.46924 * 120.63092 * 171.37996 * 12 10 8 27 27 S 1.71222 * 125.69961 * 180.31133 * 2 1 3 28 28 H 1.09004 * 109.46941 * 89.97535 * 1 2 3 29 29 H 1.09006 * 109.46780 * 209.97144 * 1 2 3 30 30 H 1.08996 * 109.47532 * 329.97098 * 1 2 3 31 31 H 1.08995 * 109.46665 * 330.02099 * 6 5 4 32 32 H 1.09002 * 109.46302 * 210.01930 * 6 5 4 33 33 H 0.96995 * 120.00359 * 0.02562 * 7 6 5 34 34 H 1.09001 * 109.58364 * 353.42154 * 13 12 10 35 35 H 1.08998 * 109.58185 * 113.69820 * 13 12 10 36 36 H 1.09001 * 109.49476 * 65.38778 * 14 13 12 37 37 H 1.08999 * 109.49901 * 185.48778 * 14 13 12 38 38 H 1.09002 * 109.35068 * 301.12365 * 15 14 13 39 39 H 1.09002 * 109.44049 * 181.23616 * 15 14 13 40 40 H 0.96998 * 120.00395 * 179.97438 * 21 20 18 41 41 H 1.09006 * 109.57806 * 246.15416 * 26 12 10 42 42 H 1.09000 * 109.58866 * 6.43300 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0511 0.0000 4 7 3.5097 0.8486 -0.0005 5 6 3.8937 -0.3873 -0.0015 6 6 5.3234 -0.8639 -0.0028 7 7 5.7875 -1.0196 1.3780 8 6 7.0445 -1.4394 1.6230 9 8 7.7917 -1.6889 0.6999 10 6 7.5178 -1.5988 3.0316 11 8 6.8162 -1.2350 3.9523 12 7 8.7241 -2.1467 3.2793 13 6 9.5030 -2.7629 2.1965 14 6 9.8808 -4.1896 2.6069 15 6 10.5974 -4.1538 3.9591 16 6 9.6621 -3.5736 5.0224 17 1 8.7603 -4.1827 5.0851 18 6 10.3604 -3.5687 6.3578 19 1 11.3694 -3.9443 6.4409 20 6 9.7110 -3.0844 7.4735 21 7 8.4819 -2.6273 7.3724 22 14 10.5767 -3.0776 9.1287 23 1 11.9420 -3.6413 8.9756 24 1 10.6696 -1.6840 9.6330 25 1 9.8064 -3.9029 10.0936 26 6 9.2849 -2.1397 4.6373 27 16 2.5061 -1.3904 -0.0076 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 5.9491 -0.1341 -0.5163 32 1 5.3861 -1.8227 -0.5175 33 1 5.1899 -0.8213 2.1158 34 1 8.9043 -2.7909 1.2860 35 1 10.4080 -2.1813 2.0209 36 1 8.9782 -4.7948 2.6916 37 1 10.5402 -4.6221 1.8545 38 1 11.4880 -3.5303 3.8795 39 1 10.8868 -5.1656 4.2431 40 1 8.0248 -2.2870 8.1573 41 1 10.1734 -1.5088 4.6624 42 1 8.5432 -1.7543 5.3369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350761434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:45 Heat of formation + Delta-G solvation = 6.663685 kcal Electronic energy + Delta-G solvation = -26544.281336 eV Core-core repulsion = 22652.298948 eV Total energy + Delta-G solvation = -3891.982388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.75231 -40.56056 -38.43327 -36.90198 -35.67934 -33.50585 -33.17023 -31.77683 -30.44655 -29.78658 -27.45621 -25.83990 -25.04582 -24.67127 -22.48601 -21.83716 -20.61468 -20.08804 -19.77606 -18.90556 -17.39272 -16.93641 -16.38436 -16.10374 -15.87417 -15.57864 -15.32202 -14.66972 -14.52991 -14.36157 -13.88136 -13.83294 -13.59155 -13.55343 -13.32622 -13.00532 -12.88310 -12.84180 -12.59471 -12.18514 -11.84800 -11.48142 -11.00743 -10.90095 -10.72142 -10.65334 -10.47316 -10.33369 -10.26905 -10.15551 -10.10215 -9.90857 -9.47896 -9.24541 -9.13786 -8.65738 -8.47095 -7.86018 -6.03072 -4.11611 -0.12205 0.40840 0.88667 1.69003 2.01607 2.66661 3.28501 3.37073 3.40226 3.42893 3.54475 3.87917 3.97477 4.36437 4.40682 4.59428 4.67998 4.86091 5.02017 5.10796 5.17489 5.27068 5.35521 5.54944 5.62860 5.76990 5.94981 6.20478 6.33203 6.44067 6.56670 6.67964 6.81171 6.95049 6.96325 7.09353 7.14987 7.56334 7.76315 7.84916 7.92918 8.10393 8.11008 8.32769 8.52378 8.92679 9.54155 11.02197 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002478 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.769394 B =11295.545424 C =12327.650540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.015 4.015 3 N -0.262 5.262 4 N -0.234 5.234 5 C -0.046 4.046 6 C 0.204 3.796 7 N -0.704 5.704 8 C 0.516 3.484 9 O -0.512 6.512 10 C 0.495 3.505 11 O -0.518 6.518 12 N -0.567 5.567 13 C 0.071 3.929 14 C -0.133 4.133 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.030 0.970 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.108 3.892 27 S 0.199 5.801 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.049 0.951 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.622 0.859 -17.991 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.293 4.293 3 N -0.101 5.101 4 N -0.073 5.073 5 C -0.325 4.325 6 C 0.077 3.923 7 N -0.360 5.360 8 C 0.299 3.701 9 O -0.389 6.389 10 C 0.276 3.724 11 O -0.395 6.395 12 N -0.300 5.300 13 C -0.051 4.051 14 C -0.172 4.172 15 C -0.150 4.150 16 C 0.022 3.978 17 H 0.048 0.952 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.012 4.012 27 S 0.442 5.558 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.253 0.747 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.528 1.306 -18.050 22.594 hybrid contribution 0.233 0.282 1.281 1.332 sum -13.295 1.588 -16.769 21.459 Atomic orbital electron populations 1.20441 0.83622 1.05099 1.04533 1.29415 1.04663 0.92045 1.03153 1.71531 0.96707 1.26682 1.15158 1.71486 1.06647 1.16912 1.12225 1.29070 1.02878 0.93059 1.07505 1.19673 0.85098 1.02706 0.84827 1.45770 1.14232 1.67750 1.08205 1.20817 0.81444 0.76838 0.91010 1.90496 1.53438 1.48440 1.46501 1.19673 0.83450 0.81430 0.87855 1.90792 1.53970 1.49839 1.44865 1.48441 1.16348 1.52875 1.12287 1.22682 0.97213 0.93440 0.91761 1.21965 1.00499 0.96076 0.98617 1.21662 0.98841 1.00529 0.94010 1.18961 0.94966 0.91289 0.92606 0.95187 1.21124 1.00628 1.42023 0.91972 0.92184 1.25070 0.94837 0.95052 0.99159 1.69891 1.11116 1.41025 1.29829 0.86521 0.79733 0.77713 0.83960 1.19764 1.20961 1.21006 1.22515 0.99028 1.01064 0.78582 1.83864 0.97038 1.10978 1.63882 0.88859 0.89385 0.88531 0.87401 0.88182 0.74746 0.85787 0.92058 0.92428 0.92028 0.93152 0.93018 0.92691 0.93230 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.48 36.00 0.38 0.05 16 2 C -0.01 -0.12 7.53 -13.30 -0.10 -0.22 16 3 N -0.26 -3.11 11.66 32.58 0.38 -2.73 16 4 N -0.23 -2.95 11.66 32.58 0.38 -2.57 16 5 C -0.05 -0.47 6.90 -13.29 -0.09 -0.56 16 6 C 0.20 2.02 6.27 -5.19 -0.03 1.99 16 7 N -0.70 -8.95 5.54 -61.91 -0.34 -9.30 16 8 C 0.52 8.13 7.74 -11.59 -0.09 8.04 16 9 O -0.51 -8.17 13.18 5.50 0.07 -8.09 16 10 C 0.50 9.80 7.73 -11.58 -0.09 9.71 16 11 O -0.52 -11.77 15.93 5.50 0.09 -11.68 16 12 N -0.57 -11.60 2.97 -173.28 -0.52 -12.11 16 13 C 0.07 1.23 5.98 -3.71 -0.02 1.20 16 14 C -0.13 -2.26 6.09 -26.60 -0.16 -2.42 16 15 C -0.11 -2.27 5.10 -26.67 -0.14 -2.40 16 16 C 0.04 1.00 2.26 -91.66 -0.21 0.80 16 17 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.52 -13.90 8.56 -34.44 -0.29 -14.20 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.68 5.30 -17.81 -0.09 1.59 16 21 N -0.88 -25.23 11.39 55.43 0.63 -24.60 16 22 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.11 2.58 5.41 -3.72 -0.02 2.56 16 27 S 0.20 1.46 23.04 -107.50 -2.48 -1.02 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.42 5.37 7.95 -40.82 -0.32 5.04 16 34 H 0.13 2.03 4.31 -54.78 -0.24 1.79 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 41 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.12 3.42 5.13 -51.93 -0.27 3.15 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -32.58 362.74 -7.74 -40.33 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.44 Total: 4.16 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.96 Total: 6.12 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.53 Total: -51.31 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.16 Total: -19.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.48 Total: -1.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.58 -7.74 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350761434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.990 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds