Wall clock time and date at job start Tue Mar 31 2020 20:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29416 * 125.69606 * 2 1 4 4 N 1.26393 * 116.47862 * 179.97438 * 3 2 1 5 5 C 1.29420 * 116.47559 * 359.97438 * 4 3 2 6 6 C 1.50693 * 125.69862 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.47256 * 90.02861 * 6 5 4 8 8 C 1.34782 * 120.00166 * 180.02562 * 7 6 5 9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99837 * 353.38299 * 10 8 7 12 12 N 1.34776 * 120.00037 * 173.38758 * 10 8 7 13 13 C 1.46926 * 120.62820 * 353.06527 * 12 10 8 14 14 C 1.53196 * 108.76922 * 126.41895 * 13 12 10 15 15 C 1.53036 * 109.34112 * 54.62209 * 14 13 12 16 16 C 1.53043 * 109.53413 * 298.67856 * 15 14 13 17 17 H 1.09001 * 109.50042 * 301.34757 * 16 15 14 18 18 C 1.50704 * 109.49240 * 181.28640 * 16 15 14 19 19 H 1.07995 * 120.00346 * 0.06542 * 18 16 15 20 20 C 1.37886 * 119.99595 * 180.34521 * 18 16 15 21 21 N 1.31514 * 119.99864 * 179.72759 * 20 18 16 22 22 Si 1.86795 * 120.00150 * 359.71814 * 20 18 16 23 23 H 1.48501 * 109.46845 * 90.00540 * 22 20 18 24 24 H 1.48496 * 109.47474 * 210.00464 * 22 20 18 25 25 H 1.48504 * 109.47401 * 330.00581 * 22 20 18 26 26 C 1.46931 * 120.62929 * 173.09459 * 12 10 8 27 27 S 1.71217 * 125.69847 * 180.22231 * 2 1 3 28 28 H 1.09000 * 109.47015 * 90.02562 * 1 2 3 29 29 H 1.08998 * 109.46522 * 210.02552 * 1 2 3 30 30 H 1.09000 * 109.47169 * 330.01972 * 1 2 3 31 31 H 1.09007 * 109.47437 * 330.02647 * 6 5 4 32 32 H 1.09010 * 109.47462 * 210.02670 * 6 5 4 33 33 H 0.96996 * 120.00059 * 359.97438 * 7 6 5 34 34 H 1.09002 * 109.58673 * 246.20018 * 13 12 10 35 35 H 1.08995 * 109.58988 * 6.48860 * 13 12 10 36 36 H 1.09005 * 109.49633 * 174.58725 * 14 13 12 37 37 H 1.09002 * 109.49831 * 294.68233 * 14 13 12 38 38 H 1.09003 * 109.48723 * 178.64696 * 15 14 13 39 39 H 1.08994 * 109.43652 * 58.68064 * 15 14 13 40 40 H 0.97002 * 120.00070 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.58264 * 113.79778 * 26 12 10 42 42 H 1.08999 * 109.70240 * 353.44052 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0510 0.0000 4 7 3.5098 0.8486 0.0005 5 6 3.8937 -0.3874 0.0015 6 6 5.3233 -0.8640 0.0017 7 7 5.7865 -1.0180 1.3830 8 6 7.0438 -1.4366 1.6294 9 8 7.7918 -1.6864 0.7071 10 6 7.5165 -1.5931 3.0385 11 8 6.8129 -1.2305 3.9584 12 7 8.7243 -2.1369 3.2876 13 6 9.5224 -2.7181 2.1995 14 6 10.9145 -2.0787 2.2134 15 6 11.5334 -2.2423 3.6034 16 6 10.6624 -1.5272 4.6389 17 1 10.5805 -0.4719 4.3789 18 6 11.2894 -1.6621 6.0027 19 1 12.2169 -2.2027 6.1196 20 6 10.6757 -1.1001 7.1021 21 7 11.2200 -1.2224 8.2931 22 14 9.0713 -0.1650 6.9000 23 1 7.9296 -1.1023 7.0523 24 1 8.9826 0.8955 7.9356 25 1 9.0262 0.4551 5.5514 26 6 9.2676 -2.1603 4.6526 27 16 2.5061 -1.3904 -0.0054 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 5.9496 -0.1349 -0.5124 32 1 5.3865 -1.8235 -0.5118 33 1 5.1887 -0.8180 2.1202 34 1 9.6130 -3.7942 2.3474 35 1 9.0366 -2.5202 1.2441 36 1 11.5473 -2.5688 1.4734 37 1 10.8302 -1.0183 1.9757 38 1 12.5338 -1.8094 3.6093 39 1 11.5951 -3.3021 3.8506 40 1 10.7884 -0.8267 9.0665 41 1 9.3374 -3.1910 5.0004 42 1 8.6156 -1.5937 5.3174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350761435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:49 Heat of formation + Delta-G solvation = 18.656433 kcal Electronic energy + Delta-G solvation = -26745.264593 eV Core-core repulsion = 22853.802250 eV Total energy + Delta-G solvation = -3891.462343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85487 -40.85710 -38.73960 -37.23194 -35.86343 -33.60578 -33.22523 -31.96074 -30.59363 -30.51646 -27.60510 -26.03430 -25.18200 -24.84720 -22.69021 -21.98763 -20.80276 -20.22016 -19.86973 -19.03723 -17.70232 -17.14757 -16.72331 -16.43214 -16.03960 -15.80215 -15.65254 -14.90267 -14.63485 -14.34214 -14.13874 -13.97453 -13.84136 -13.70178 -13.54357 -13.23805 -13.06809 -12.97728 -12.78283 -12.50555 -12.16812 -11.76184 -11.09926 -11.00195 -10.95061 -10.74679 -10.52724 -10.42002 -10.34911 -10.20248 -10.13870 -9.78764 -9.67679 -9.50341 -9.16660 -8.79109 -8.64059 -8.20824 -6.13597 -4.14842 -0.22385 0.30635 0.78273 1.42179 1.89950 2.44406 3.25543 3.32232 3.33746 3.41008 3.49923 3.61425 3.87420 4.25434 4.35407 4.38274 4.54600 4.78471 4.92320 4.99324 5.06754 5.18204 5.27719 5.36469 5.48963 5.57053 5.73905 5.99570 6.09820 6.13067 6.33935 6.42828 6.47737 6.56071 6.72755 6.77614 6.83978 7.12034 7.39842 7.55299 7.66685 7.72395 8.01079 8.13633 8.46143 8.90262 9.47653 10.98463 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002740 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.628512 B =10216.323829 C =11311.268940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.013 4.013 3 N -0.261 5.261 4 N -0.232 5.232 5 C -0.048 4.048 6 C 0.204 3.796 7 N -0.702 5.702 8 C 0.521 3.479 9 O -0.504 6.504 10 C 0.496 3.504 11 O -0.530 6.530 12 N -0.566 5.566 13 C 0.051 3.949 14 C -0.131 4.131 15 C -0.103 4.103 16 C 0.005 3.995 17 H 0.031 0.969 18 C -0.515 4.515 19 H 0.079 0.921 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.877 3.123 23 H -0.271 1.271 24 H -0.294 1.294 25 H -0.265 1.265 26 C 0.098 3.902 27 S 0.197 5.803 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.416 0.584 34 H 0.062 0.938 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.266 0.734 41 H 0.074 0.926 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.937 -3.621 -20.756 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.291 4.291 3 N -0.100 5.100 4 N -0.071 5.071 5 C -0.327 4.327 6 C 0.077 3.923 7 N -0.357 5.357 8 C 0.303 3.697 9 O -0.380 6.380 10 C 0.277 3.723 11 O -0.408 6.408 12 N -0.297 5.297 13 C -0.070 4.070 14 C -0.169 4.169 15 C -0.141 4.141 16 C -0.014 4.014 17 H 0.049 0.951 18 C -0.553 4.553 19 H 0.097 0.903 20 C -0.130 4.130 21 N -0.531 5.531 22 Si 0.707 3.293 23 H -0.198 1.198 24 H -0.221 1.221 25 H -0.190 1.190 26 C -0.022 4.022 27 S 0.441 5.559 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.714 -3.229 -20.736 28.793 hybrid contribution -1.091 0.750 0.525 1.424 sum -20.805 -2.479 -20.211 29.111 Atomic orbital electron populations 1.20452 0.83559 1.05122 1.04610 1.29435 1.04696 0.91966 1.02982 1.71537 0.96679 1.26654 1.15137 1.71497 1.06674 1.16895 1.12029 1.29048 1.02814 0.93095 1.07758 1.19703 0.85252 1.02906 0.84467 1.45766 1.14005 1.67451 1.08477 1.20582 0.81556 0.76961 0.90576 1.90343 1.52429 1.48902 1.46345 1.19752 0.83369 0.80873 0.88266 1.90765 1.54667 1.50052 1.45299 1.48387 1.15745 1.54221 1.11397 1.23165 0.93343 0.97055 0.93482 1.21904 0.95374 1.00926 0.98690 1.21482 0.99115 1.00618 0.92861 1.19502 0.90021 0.95610 0.96316 0.95079 1.20962 1.09470 1.35703 0.89146 0.90302 1.25053 0.97305 0.95397 0.95247 1.69885 1.39629 1.44781 0.98853 0.87017 0.83989 0.80297 0.78005 1.19794 1.22088 1.19041 1.22857 0.97575 1.02369 0.79409 1.83831 0.97053 1.11043 1.63989 0.88780 0.89378 0.88481 0.87195 0.87979 0.74726 0.91991 0.83731 0.91574 0.92137 0.92193 0.92523 0.92455 0.90759 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.48 36.01 0.38 0.10 16 2 C -0.01 -0.10 7.53 -13.29 -0.10 -0.20 16 3 N -0.26 -2.95 11.66 32.58 0.38 -2.57 16 4 N -0.23 -2.78 11.66 32.58 0.38 -2.40 16 5 C -0.05 -0.44 6.90 -13.30 -0.09 -0.54 16 6 C 0.20 1.80 6.27 -5.20 -0.03 1.77 16 7 N -0.70 -8.09 5.54 -61.90 -0.34 -8.43 16 8 C 0.52 7.52 7.78 -11.58 -0.09 7.43 16 9 O -0.50 -7.34 13.10 5.50 0.07 -7.27 16 10 C 0.50 9.12 7.74 -11.59 -0.09 9.03 16 11 O -0.53 -11.15 15.95 5.49 0.09 -11.06 16 12 N -0.57 -10.77 2.97 -173.28 -0.51 -11.28 16 13 C 0.05 0.80 6.27 -3.71 -0.02 0.77 16 14 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 15 C -0.10 -1.99 5.11 -26.69 -0.14 -2.12 16 16 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 17 H 0.03 0.78 7.21 -51.93 -0.37 0.40 16 18 C -0.51 -14.24 9.15 -34.44 -0.31 -14.56 16 19 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 20 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 21 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 22 Si 0.88 22.95 24.32 -169.99 -4.13 18.82 16 23 H -0.27 -7.09 6.91 56.52 0.39 -6.70 16 24 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.94 6.54 56.52 0.37 -6.57 16 26 C 0.10 2.19 5.09 -3.71 -0.02 2.17 16 27 S 0.20 1.26 23.04 -107.50 -2.48 -1.22 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 33 H 0.42 4.83 7.95 -40.82 -0.32 4.50 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.15 2.16 3.78 -56.75 -0.21 1.94 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 42 H 0.08 1.95 2.36 -51.93 -0.12 1.83 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -34.59 355.59 -6.65 -41.24 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.28 Total: 1.74 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.95 Total: 3.56 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.68 Total: -51.16 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.16 Total: -18.33 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.13 Total: 18.82 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.48 Total: -1.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.59 -6.65 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350761435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.896 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds