Wall clock time and date at job start Tue Mar 31 2020 20:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35565 * 125.82720 * 2 1 4 4 N 1.35402 * 107.15899 * 179.73304 * 3 2 1 5 5 H 0.97004 * 126.43424 * 180.02562 * 4 3 2 6 6 C 1.36662 * 107.12101 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.85940 * 179.97438 * 6 4 3 8 8 O 1.21606 * 119.99972 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99966 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99869 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46908 * 179.97438 * 10 9 7 12 12 C 1.53950 * 113.74143 * 273.74202 * 11 10 9 13 13 N 1.47809 * 86.03653 * 222.08752 * 12 11 10 14 14 C 1.34783 * 134.45437 * 204.65077 * 13 12 11 15 15 O 1.21278 * 119.99385 * 179.85983 * 14 13 12 16 16 C 1.50692 * 119.99829 * 359.86104 * 14 13 12 17 17 S 1.81002 * 109.46827 * 180.02562 * 16 14 13 18 18 C 1.76206 * 99.99895 * 179.97438 * 17 16 14 19 19 H 1.07996 * 119.99764 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99798 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99948 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99813 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47286 * 59.99785 * 22 20 18 24 24 H 1.48503 * 109.47326 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47459 * 299.99904 * 22 20 18 26 26 C 1.47574 * 91.05124 * 24.54665 * 13 12 11 27 27 N 1.31607 * 108.27744 * 0.02562 * 6 4 3 28 28 H 1.09006 * 109.46613 * 90.00101 * 1 2 3 29 29 H 1.08994 * 109.47410 * 210.00086 * 1 2 3 30 30 H 1.09002 * 109.47242 * 330.00983 * 1 2 3 31 31 H 1.08001 * 126.41484 * 359.68967 * 3 2 1 32 32 H 0.97000 * 119.99471 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.46927 * 299.99852 * 10 9 7 34 34 H 1.09002 * 109.46992 * 60.00292 * 10 9 7 35 35 H 1.08996 * 112.94307 * 45.32772 * 11 10 9 36 36 H 1.09008 * 113.76896 * 336.34965 * 12 11 10 37 37 H 1.08999 * 113.76707 * 107.74241 * 12 11 10 38 38 H 1.08999 * 109.47135 * 300.00019 * 16 14 13 39 39 H 1.09001 * 109.47919 * 60.00147 * 16 14 13 40 40 H 0.97003 * 119.99608 * 180.02562 * 21 20 18 41 41 H 1.09006 * 113.77628 * 221.15488 * 26 13 12 42 42 H 1.09005 * 113.76966 * 89.75692 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6657 0.0060 5 1 4.3789 1.2207 0.0079 6 6 3.5464 -0.7004 0.0102 7 6 4.7173 -1.5958 0.0167 8 8 5.8401 -1.1286 0.0184 9 7 4.5436 -2.9324 0.0199 10 6 5.7073 -3.8223 0.0258 11 6 5.2361 -5.2780 0.0290 12 6 4.9538 -5.8350 1.4362 13 7 5.6308 -7.0648 0.9733 14 6 5.5786 -8.3630 1.3320 15 8 6.2671 -9.1790 0.7566 16 6 4.6650 -8.8003 2.4477 17 16 4.8210 -10.5873 2.6897 18 6 3.6791 -10.8178 4.0118 19 1 3.1409 -9.9723 4.4140 20 6 3.4716 -12.0860 4.5364 21 7 4.1273 -13.1165 4.0458 22 14 2.2617 -12.3302 5.9384 23 1 0.9091 -11.8947 5.5067 24 1 2.2223 -13.7665 6.3138 25 1 2.6911 -11.5238 7.1090 26 6 6.3841 -6.3012 -0.0402 27 7 2.2860 -1.0792 0.0063 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5137 31 1 1.9711 2.1277 -0.0047 32 1 3.6480 -3.3050 0.0182 33 1 6.3106 -3.6373 -0.8629 34 1 6.3053 -3.6325 0.9171 35 1 4.4358 -5.4671 -0.6864 36 1 5.4869 -5.3125 2.2306 37 1 3.8937 -5.9698 1.6508 38 1 4.9413 -8.2841 3.3670 39 1 3.6343 -8.5568 2.1900 40 1 3.9819 -14.0029 4.4122 41 1 6.4639 -6.8075 -1.0022 42 1 7.3382 -5.9160 0.3195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356815329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:35 Heat of formation + Delta-G solvation = 19.272364 kcal Electronic energy + Delta-G solvation = -25001.439368 eV Core-core repulsion = 21110.003734 eV Total energy + Delta-G solvation = -3891.435635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.76055 -40.45930 -39.52717 -37.60070 -35.16222 -33.69686 -32.42654 -31.98808 -30.87477 -29.07009 -27.61335 -26.35450 -25.91455 -25.36701 -23.57071 -21.31831 -20.85649 -20.76921 -19.11401 -18.99889 -17.69584 -16.97291 -16.78021 -16.57265 -16.32141 -15.66481 -15.42294 -15.06991 -14.79854 -14.60151 -14.51867 -14.13465 -13.79454 -13.53935 -13.49591 -13.17725 -13.06524 -12.85002 -12.68574 -12.49183 -12.19785 -11.91253 -11.60211 -11.13692 -11.03441 -11.03301 -10.81492 -10.76919 -10.71601 -10.62790 -9.82701 -9.61684 -9.37335 -9.05592 -8.92393 -8.61568 -8.24101 -6.50308 -6.21046 -3.92028 0.85977 2.04511 2.06179 2.72508 2.93006 2.98278 3.06964 3.24049 3.24311 3.29264 3.54816 3.71454 4.03359 4.20736 4.37682 4.43102 4.54720 4.59889 4.71043 4.78896 4.96814 5.13916 5.23755 5.25254 5.26752 5.28035 5.31250 5.36351 5.43811 5.49061 5.52262 5.58688 5.79909 5.88550 5.97784 6.02242 6.09150 6.14712 6.60117 6.89348 7.32168 7.59683 7.64522 7.80093 8.35499 8.53977 9.23934 10.86333 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.001921 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.317754 B =14572.146219 C =16235.607156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.001 3.999 3 C -0.023 4.023 4 N -0.524 5.524 5 H 0.431 0.569 6 C 0.145 3.855 7 C 0.608 3.392 8 O -0.542 6.542 9 N -0.701 5.701 10 C 0.130 3.870 11 C -0.139 4.139 12 C 0.107 3.893 13 N -0.652 5.652 14 C 0.556 3.444 15 O -0.515 6.515 16 C -0.145 4.145 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.120 3.880 27 N -0.439 5.439 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.187 0.813 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 32.070 -9.496 33.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 C -0.162 4.162 4 N -0.125 5.125 5 H 0.270 0.730 6 C -0.116 4.116 7 C 0.392 3.608 8 O -0.418 6.418 9 N -0.353 5.353 10 C 0.006 3.994 11 C -0.158 4.158 12 C -0.016 4.016 13 N -0.391 5.391 14 C 0.346 3.654 15 O -0.388 6.388 16 C -0.296 4.296 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.746 3.254 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.003 4.003 27 N -0.162 5.162 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.204 0.796 32 H 0.252 0.748 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.377 29.850 -10.269 31.656 hybrid contribution -1.378 1.854 1.651 2.840 sum -3.756 31.704 -8.618 33.068 Atomic orbital electron populations 1.20092 0.86839 1.03208 1.02650 1.20945 0.97129 0.87863 1.07378 1.22781 0.82927 1.01180 1.09294 1.42882 1.09261 1.07533 1.52869 0.72964 1.22574 0.93759 0.82398 1.12858 1.16420 0.85481 0.82050 0.76868 1.90864 1.23753 1.76109 1.51076 1.45622 1.11456 1.04649 1.73588 1.21454 0.87512 0.86901 1.03523 1.23484 1.00522 0.92785 0.99045 1.23324 0.99387 0.83166 0.95761 1.50016 1.45267 1.05386 1.38444 1.20048 0.82439 0.79544 0.83387 1.90715 1.43414 1.50622 1.54086 1.23472 1.00869 1.06928 0.98295 1.85403 1.57296 0.94377 1.46329 1.22815 1.28127 0.96632 1.20799 0.90973 1.24996 0.96384 0.94886 0.97329 1.70009 1.39915 0.99596 1.40741 0.86215 0.80675 0.77350 0.81204 1.19916 1.20804 1.19938 1.22980 0.94951 0.88736 0.93648 1.70105 0.99102 1.31096 1.15940 0.91055 0.90684 0.91011 0.79583 0.74813 0.90167 0.90231 0.86966 0.89516 0.89564 0.89359 0.89303 0.92117 0.89608 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.42 36.01 0.38 0.04 16 2 C 0.00 0.01 7.07 -83.00 -0.59 -0.58 16 3 C -0.02 -0.12 11.91 -16.93 -0.20 -0.32 16 4 N -0.52 -3.30 6.14 -10.78 -0.07 -3.36 16 5 H 0.43 1.81 8.96 -40.82 -0.37 1.44 16 6 C 0.15 1.29 7.95 -154.53 -1.23 0.06 16 7 C 0.61 5.77 7.81 -12.52 -0.10 5.67 16 8 O -0.54 -6.41 17.09 5.27 0.09 -6.31 16 9 N -0.70 -5.27 5.55 -61.39 -0.34 -5.61 16 10 C 0.13 0.88 5.51 -4.04 -0.02 0.86 16 11 C -0.14 -1.02 3.93 -89.69 -0.35 -1.37 16 12 C 0.11 1.00 8.18 -2.84 -0.02 0.97 16 13 N -0.65 -9.07 3.61 -178.15 -0.64 -9.71 16 14 C 0.56 10.87 8.07 -10.99 -0.09 10.78 16 15 O -0.51 -12.18 16.59 5.56 0.09 -12.09 16 16 C -0.15 -3.02 5.91 36.00 0.21 -2.81 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 C 0.12 1.21 8.40 -2.97 -0.02 1.18 16 27 N -0.44 -4.07 10.89 -7.50 -0.08 -4.15 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.19 0.25 8.06 -52.49 -0.42 -0.18 16 32 H 0.42 2.76 8.15 -40.82 -0.33 2.43 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.71 7.92 -51.92 -0.41 0.30 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 39 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -38.81 383.19 -9.23 -48.04 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.71 Total: -1.04 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -1.84 Total: 1.44 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.40 Total: -48.40 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.81 -9.23 -48.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356815329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.316 kcal (2) G-P(sol) polarization free energy of solvation -38.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds