Wall clock time and date at job start Tue Mar 31 2020 21:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.53000 * 109.46983 * 120.00353 * 2 1 3 5 5 N 1.46497 * 109.47503 * 65.41593 * 4 2 1 6 6 C 1.46506 * 119.99520 * 273.52276 * 5 4 2 7 7 C 1.50697 * 109.47295 * 274.06349 * 6 5 4 8 8 H 1.08003 * 119.99807 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00302 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99823 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00427 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47206 * 89.99476 * 11 9 7 13 13 H 1.48497 * 109.47280 * 210.00139 * 11 9 7 14 14 H 1.48506 * 109.46655 * 329.99728 * 11 9 7 15 15 S 1.65596 * 120.00333 * 93.52250 * 5 4 2 16 16 O 1.42103 * 106.40278 * 336.46419 * 15 5 4 17 17 O 1.42099 * 106.40603 * 203.54174 * 15 5 4 18 18 C 1.76204 * 107.21857 * 89.99996 * 15 5 4 19 19 C 1.35875 * 126.75380 * 114.97659 * 18 15 5 20 20 N 1.33492 * 110.86915 * 180.02562 * 19 18 15 21 21 C 1.31625 * 110.88340 * 359.97438 * 20 19 18 22 22 N 1.37376 * 135.89455 * 180.02562 * 21 20 19 23 23 H 0.97002 * 120.32564 * 359.97438 * 22 21 20 24 24 C 1.34074 * 119.35727 * 180.02562 * 22 21 20 25 25 N 1.30939 * 123.17009 * 0.02562 * 24 22 21 26 26 C 1.32831 * 122.74841 * 359.97438 * 25 24 22 27 27 C 1.38880 * 119.03678 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47144 * 292.20926 * 1 2 3 29 29 H 1.08998 * 109.47262 * 52.21046 * 1 2 3 30 30 H 1.09009 * 109.47432 * 172.21257 * 1 2 3 31 31 H 1.09002 * 109.46830 * 239.99803 * 2 1 3 32 32 H 1.08992 * 109.47078 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46839 * 300.00062 * 3 2 1 34 34 H 1.09003 * 109.46592 * 59.99775 * 3 2 1 35 35 H 1.08999 * 109.46705 * 305.41000 * 4 2 1 36 36 H 1.09001 * 109.46917 * 185.41680 * 4 2 1 37 37 H 1.08994 * 109.47113 * 34.06849 * 6 5 4 38 38 H 1.09003 * 109.46643 * 154.06729 * 6 5 4 39 39 H 0.96993 * 120.00117 * 180.02562 * 10 9 7 40 40 H 1.08000 * 124.56478 * 0.05342 * 19 18 15 41 41 H 1.08006 * 118.41098 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.47976 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6610 -2.1350 1.1858 6 6 0.3511 -2.5651 1.6813 7 6 0.4348 -2.8239 3.1635 8 1 1.3702 -2.6819 3.6844 9 6 -0.6825 -3.2421 3.8545 10 7 -1.8217 -3.4147 3.2202 11 14 -0.5789 -3.5623 5.6920 12 1 -0.8948 -2.3134 6.4306 13 1 -1.5532 -4.6187 6.0661 14 1 0.7938 -4.0094 6.0398 15 16 2.7132 -3.2468 0.5541 16 8 3.5869 -2.5288 -0.3063 17 8 1.9233 -4.3450 0.1192 18 6 3.7035 -3.8422 1.8844 19 6 3.7294 -5.1090 2.3751 20 7 4.5953 -5.2098 3.3860 21 6 5.1791 -4.0537 3.6208 22 7 6.1190 -3.5851 4.5064 23 1 6.5111 -4.1798 5.1647 24 6 6.4882 -2.2973 4.4526 25 7 5.9946 -1.4459 3.5889 26 6 5.0812 -1.7860 2.6864 27 6 4.6246 -3.0971 2.6504 28 1 -0.3634 0.3885 0.9515 29 1 -0.3634 0.6297 -0.8121 30 1 -0.3634 -1.0183 -0.1393 31 1 1.8933 -0.5139 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.5996 -0.2665 2.1365 36 1 3.1256 -0.6381 1.2990 37 1 -0.3842 -1.7837 1.4898 38 1 0.0513 -3.4795 1.1691 39 1 -2.6079 -3.7085 3.7064 40 1 3.1304 -5.9246 1.9977 41 1 7.2279 -1.9450 5.1564 42 1 4.6993 -1.0535 1.9906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365036858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:44 Heat of formation + Delta-G solvation = 18.933220 kcal Electronic energy + Delta-G solvation = -28638.942613 eV Core-core repulsion = 24747.492272 eV Total energy + Delta-G solvation = -3891.450341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.89175 -38.73131 -37.13152 -36.41531 -35.24011 -35.06949 -33.60178 -32.06876 -30.55553 -29.27348 -27.63453 -26.65422 -25.08685 -24.80119 -23.54898 -22.21893 -21.39063 -19.94175 -19.02846 -18.38042 -17.50696 -17.18583 -16.77097 -16.36641 -15.89688 -15.68222 -15.34085 -14.86265 -14.44116 -14.34115 -13.94187 -13.35595 -13.22970 -13.04667 -13.00252 -12.58181 -12.33468 -12.02692 -11.89778 -11.67984 -11.46797 -11.36098 -11.22038 -11.16156 -11.05643 -10.83779 -10.69854 -10.58967 -10.49527 -10.18447 -10.09504 -9.95838 -9.68296 -9.58289 -8.70941 -8.42796 -8.25820 -7.89661 -6.05658 -4.10045 -0.12408 1.12884 1.35219 1.98577 3.02567 3.25668 3.33298 3.35939 3.40785 3.65586 3.80366 4.06525 4.38630 4.41238 4.53222 4.72597 4.81804 5.08305 5.25618 5.28960 5.33218 5.39402 5.54259 5.58425 5.74368 6.00023 6.02807 6.10469 6.22311 6.24288 6.25770 6.32614 6.47800 6.54370 6.63550 6.78551 6.88080 6.92116 7.38788 7.42720 7.51188 7.72221 7.80661 7.92264 8.22873 8.93855 9.54824 11.02360 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.006765 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.276657 B = 4138.099712 C = 5634.212629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.138 3.862 5 N -0.981 5.981 6 C 0.239 3.761 7 C -0.533 4.533 8 H 0.057 0.943 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.889 3.111 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.277 1.277 15 S 2.712 3.288 16 O -0.983 6.983 17 O -0.962 6.962 18 C -0.749 4.749 19 C 0.202 3.798 20 N -0.528 5.528 21 C 0.284 3.716 22 N -0.525 5.525 23 H 0.427 0.573 24 C 0.342 3.658 25 N -0.519 5.519 26 C 0.200 3.800 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.263 0.737 40 H 0.182 0.818 41 H 0.218 0.782 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.609 5.803 1.567 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.201 4.201 4 C 0.012 3.988 5 N -0.819 5.819 6 C 0.117 3.883 7 C -0.572 4.572 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.717 3.283 12 H -0.207 1.207 13 H -0.210 1.210 14 H -0.202 1.202 15 S 2.801 3.199 16 O -0.973 6.973 17 O -0.953 6.953 18 C -0.841 4.841 19 C 0.053 3.947 20 N -0.249 5.249 21 C 0.033 3.967 22 N -0.128 5.128 23 H 0.266 0.734 24 C 0.059 3.941 25 N -0.237 5.237 26 C 0.049 3.951 27 C -0.136 4.136 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.199 0.801 41 H 0.234 0.766 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 15.836 5.395 1.205 16.773 hybrid contribution -0.143 -0.686 1.934 2.057 sum 15.693 4.709 3.139 16.683 Atomic orbital electron populations 1.21940 0.94640 1.02590 1.01186 1.21598 0.96933 0.95863 0.99271 1.21772 1.00706 0.96030 1.01555 1.21192 0.97797 0.81537 0.98292 1.57366 1.29470 1.15890 1.79159 1.19415 0.77673 0.97237 0.93964 1.21536 0.96195 1.45738 0.93775 0.92427 1.24884 0.95352 0.95361 0.98100 1.69919 1.00482 1.46514 1.35893 0.86645 0.77794 0.77940 0.85906 1.20740 1.21039 1.20240 1.01130 0.72421 0.73084 0.73282 1.93497 1.67307 1.73260 1.63225 1.93529 1.68544 1.53321 1.79865 1.31714 1.20687 1.04222 1.27487 1.22426 0.90043 0.94881 0.87302 1.69596 1.13577 1.21889 1.19815 1.20868 0.91537 0.93669 0.90653 1.42051 1.31152 1.11590 1.28035 0.73389 1.24957 0.95266 0.77994 0.95835 1.67972 1.15062 1.33343 1.07304 1.22970 0.87184 0.93452 0.91502 1.20329 1.00438 0.94196 0.98610 0.92370 0.93774 0.91350 0.90879 0.92812 0.92864 0.92677 0.89923 0.92524 0.92881 0.93047 0.92689 0.80052 0.76555 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.84 37.16 0.29 -2.08 16 2 C -0.12 -1.82 3.12 -90.62 -0.28 -2.10 16 3 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 4 C 0.14 2.37 4.84 -4.04 -0.02 2.35 16 5 N -0.98 -20.24 2.67 -115.66 -0.31 -20.54 16 6 C 0.24 5.86 4.70 -5.19 -0.02 5.83 16 7 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 11 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 15 S 2.71 56.57 5.81 -107.50 -0.62 55.94 16 16 O -0.98 -20.24 16.92 -57.17 -0.97 -21.21 16 17 O -0.96 -22.81 16.34 -57.17 -0.93 -23.75 16 18 C -0.75 -14.78 6.27 -39.35 -0.25 -15.02 16 19 C 0.20 3.95 11.38 -17.68 -0.20 3.75 16 20 N -0.53 -9.66 11.16 -11.02 -0.12 -9.78 16 21 C 0.28 4.45 8.71 -153.98 -1.34 3.11 16 22 N -0.52 -4.82 5.35 -12.04 -0.06 -4.88 16 23 H 0.43 2.20 8.93 -40.82 -0.36 1.83 16 24 C 0.34 2.53 12.25 -90.88 -1.11 1.42 16 25 N -0.52 -5.83 10.30 -14.07 -0.14 -5.97 16 26 C 0.20 2.86 11.33 -16.88 -0.19 2.67 16 27 C -0.12 -2.16 6.45 -104.98 -0.68 -2.83 16 28 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 29 H 0.04 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.07 1.25 6.23 -51.92 -0.32 0.93 16 31 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 36 H 0.06 0.85 5.26 -51.93 -0.27 0.58 16 37 H 0.05 1.31 5.46 -51.93 -0.28 1.02 16 38 H 0.05 1.40 6.93 -51.93 -0.36 1.04 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.18 3.29 8.06 -52.49 -0.42 2.87 16 41 H 0.22 0.24 8.06 -52.48 -0.42 -0.18 16 42 H 0.18 2.33 5.70 -52.48 -0.30 2.03 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -36.96 361.08 -11.14 -48.10 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.24 Total: 2.17 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.89 Total: -17.15 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: 0.10 Total: -66.00 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.90 Total: -44.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 56.57 SS G_CDS: -0.62 Total: 55.94 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.96 -11.14 -48.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365036858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.029 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds