Wall clock time and date at job start Tue Mar 31 2020 21:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.53000 * 109.46983 * 120.00353 * 2 1 3 5 5 N 1.46497 * 109.47503 * 65.41593 * 4 2 1 6 6 C 1.46506 * 119.99520 * 273.52276 * 5 4 2 7 7 C 1.50697 * 109.47295 * 274.06349 * 6 5 4 8 8 H 1.08003 * 119.99807 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00302 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99823 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00427 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47206 * 89.99476 * 11 9 7 13 13 H 1.48497 * 109.47280 * 210.00139 * 11 9 7 14 14 H 1.48506 * 109.46655 * 329.99728 * 11 9 7 15 15 S 1.65596 * 120.00333 * 93.52250 * 5 4 2 16 16 O 1.42103 * 106.40278 * 336.46419 * 15 5 4 17 17 O 1.42099 * 106.40603 * 203.54174 * 15 5 4 18 18 C 1.76204 * 107.21857 * 89.99996 * 15 5 4 19 19 C 1.35875 * 126.75380 * 114.97659 * 18 15 5 20 20 N 1.33492 * 110.86915 * 180.02562 * 19 18 15 21 21 C 1.31625 * 110.88340 * 359.97438 * 20 19 18 22 22 N 1.37376 * 135.89455 * 180.02562 * 21 20 19 23 23 H 0.97002 * 120.32564 * 359.97438 * 22 21 20 24 24 C 1.34074 * 119.35727 * 180.02562 * 22 21 20 25 25 N 1.30939 * 123.17009 * 0.02562 * 24 22 21 26 26 C 1.32831 * 122.74841 * 359.97438 * 25 24 22 27 27 C 1.38880 * 119.03678 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47144 * 292.20926 * 1 2 3 29 29 H 1.08998 * 109.47262 * 52.21046 * 1 2 3 30 30 H 1.09009 * 109.47432 * 172.21257 * 1 2 3 31 31 H 1.09002 * 109.46830 * 239.99803 * 2 1 3 32 32 H 1.08992 * 109.47078 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46839 * 300.00062 * 3 2 1 34 34 H 1.09003 * 109.46592 * 59.99775 * 3 2 1 35 35 H 1.08999 * 109.46705 * 305.41000 * 4 2 1 36 36 H 1.09001 * 109.46917 * 185.41680 * 4 2 1 37 37 H 1.08994 * 109.47113 * 34.06849 * 6 5 4 38 38 H 1.09003 * 109.46643 * 154.06729 * 6 5 4 39 39 H 0.96993 * 120.00117 * 180.02562 * 10 9 7 40 40 H 1.08000 * 124.56478 * 0.05342 * 19 18 15 41 41 H 1.08006 * 118.41098 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.47976 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6610 -2.1350 1.1858 6 6 0.3511 -2.5651 1.6813 7 6 0.4348 -2.8239 3.1635 8 1 1.3702 -2.6819 3.6844 9 6 -0.6825 -3.2421 3.8545 10 7 -1.8217 -3.4147 3.2202 11 14 -0.5789 -3.5623 5.6920 12 1 -0.8948 -2.3134 6.4306 13 1 -1.5532 -4.6187 6.0661 14 1 0.7938 -4.0094 6.0398 15 16 2.7132 -3.2468 0.5541 16 8 3.5869 -2.5288 -0.3063 17 8 1.9233 -4.3450 0.1192 18 6 3.7035 -3.8422 1.8844 19 6 3.7294 -5.1090 2.3751 20 7 4.5953 -5.2098 3.3860 21 6 5.1791 -4.0537 3.6208 22 7 6.1190 -3.5851 4.5064 23 1 6.5111 -4.1798 5.1647 24 6 6.4882 -2.2973 4.4526 25 7 5.9946 -1.4459 3.5889 26 6 5.0812 -1.7860 2.6864 27 6 4.6246 -3.0971 2.6504 28 1 -0.3634 0.3885 0.9515 29 1 -0.3634 0.6297 -0.8121 30 1 -0.3634 -1.0183 -0.1393 31 1 1.8933 -0.5139 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.5996 -0.2665 2.1365 36 1 3.1256 -0.6381 1.2990 37 1 -0.3842 -1.7837 1.4898 38 1 0.0513 -3.4795 1.1691 39 1 -2.6079 -3.7085 3.7064 40 1 3.1304 -5.9246 1.9977 41 1 7.2279 -1.9450 5.1564 42 1 4.6993 -1.0535 1.9906 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365036858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:43 Heat of formation + Delta-G solvation = -7.733554 kcal Electronic energy + Delta-G solvation = -28640.098971 eV Core-core repulsion = 24747.492272 eV Total energy + Delta-G solvation = -3892.606699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94484 -39.81609 -38.61402 -38.12742 -36.79432 -36.20048 -35.33846 -33.88937 -31.67976 -30.48433 -29.46150 -27.89110 -26.54959 -26.01267 -24.58084 -24.07291 -22.67664 -21.24439 -20.29791 -19.37012 -18.98645 -18.60974 -18.35042 -18.11133 -17.35993 -16.81736 -16.71375 -16.28305 -16.04596 -15.77720 -15.32546 -14.85020 -14.51278 -14.23059 -14.22859 -14.16954 -13.96577 -13.58974 -13.17196 -13.08208 -13.04104 -12.94240 -12.87850 -12.75597 -12.66980 -12.47145 -12.28784 -12.11099 -11.84691 -11.65531 -11.58105 -11.49152 -11.39608 -10.89962 -10.54045 -9.90552 -9.67674 -9.44285 -8.16045 -6.27095 -1.17020 -0.34049 0.19290 1.12518 1.33585 1.36728 1.45057 1.68137 2.23775 2.33782 2.41632 2.84041 2.87205 3.09535 3.15127 3.38121 3.45274 3.77144 3.90759 4.02955 4.10561 4.21639 4.27809 4.37540 4.50562 4.70743 4.79917 4.89790 4.97522 5.03897 5.12786 5.18427 5.29665 5.31376 5.39926 5.48194 5.52399 5.58582 5.61886 5.68187 5.77992 6.01815 6.15246 6.45252 6.58758 6.83244 7.40711 8.91644 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008311 B = 0.006765 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3368.276657 B = 4138.099712 C = 5634.212629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.130 3.870 5 N -0.982 5.982 6 C 0.256 3.744 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.014 3.986 10 N -0.924 5.924 11 Si 0.951 3.049 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.279 1.279 15 S 2.719 3.281 16 O -0.984 6.984 17 O -1.003 7.003 18 C -0.762 4.762 19 C 0.165 3.835 20 N -0.546 5.546 21 C 0.274 3.726 22 N -0.506 5.506 23 H 0.451 0.549 24 C 0.384 3.616 25 N -0.533 5.533 26 C 0.224 3.776 27 C -0.174 4.174 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.265 0.735 40 H 0.172 0.828 41 H 0.295 0.705 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.881 8.479 4.302 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.194 4.194 4 C 0.005 3.995 5 N -0.820 5.820 6 C 0.133 3.867 7 C -0.574 4.574 8 H 0.075 0.925 9 C -0.185 4.185 10 N -0.564 5.564 11 Si 0.777 3.223 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.204 1.204 15 S 2.811 3.189 16 O -0.975 6.975 17 O -0.994 6.994 18 C -0.858 4.858 19 C 0.015 3.985 20 N -0.267 5.267 21 C 0.024 3.976 22 N -0.111 5.111 23 H 0.294 0.706 24 C 0.103 3.897 25 N -0.249 5.249 26 C 0.070 3.930 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.190 0.810 41 H 0.310 0.690 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 19.149 8.084 3.962 21.160 hybrid contribution -0.908 -1.359 1.177 2.014 sum 18.240 6.725 5.139 20.108 Atomic orbital electron populations 1.21895 0.95401 1.01030 1.01802 1.21613 0.96311 0.97991 0.97846 1.21733 1.01544 0.93351 1.02778 1.21502 0.99313 0.79550 0.99183 1.57206 1.28146 1.17590 1.79035 1.18954 0.79458 0.95546 0.92790 1.21772 0.95966 1.45017 0.94637 0.92539 1.25666 0.95124 0.95374 1.02356 1.70037 1.01148 1.47631 1.37550 0.85668 0.77415 0.78220 0.80992 1.19154 1.20946 1.20432 1.00581 0.72251 0.72415 0.73651 1.93470 1.66966 1.73189 1.63834 1.93466 1.69875 1.54875 1.81207 1.31293 1.21767 1.04926 1.27779 1.22392 0.91949 0.95037 0.89153 1.69478 1.14133 1.23383 1.19708 1.20910 0.92573 0.92539 0.91627 1.42245 1.29227 1.12628 1.26960 0.70590 1.26637 0.92944 0.76333 0.93819 1.68112 1.14788 1.34330 1.07703 1.23196 0.86330 0.92167 0.91313 1.20370 1.02088 0.95781 1.00244 0.92821 0.91476 0.94529 0.92117 0.91461 0.91471 0.91667 0.89894 0.90220 0.93267 0.96795 0.92592 0.81044 0.69032 0.80168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 7.84 71.98 0.56 -4.17 16 2 C -0.12 -3.62 3.12 -10.79 -0.03 -3.65 16 3 C -0.14 -3.05 9.19 71.98 0.66 -2.39 16 4 C 0.13 4.43 4.84 86.38 0.42 4.85 16 5 N -0.98 -42.27 2.67 -519.85 -1.39 -43.65 16 6 C 0.26 13.27 4.70 85.63 0.40 13.67 16 7 C -0.53 -29.38 9.39 25.60 0.24 -29.14 16 8 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.01 0.80 5.46 84.65 0.46 1.26 16 10 N -0.92 -54.76 13.29 21.45 0.28 -54.48 16 11 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 15 S 2.72 119.85 5.81 -56.49 -0.33 119.52 16 16 O -0.98 -41.71 16.92 -128.00 -2.17 -43.88 16 17 O -1.00 -51.70 16.34 -128.00 -2.09 -53.79 16 18 C -0.76 -31.36 6.27 22.42 0.14 -31.22 16 19 C 0.16 6.89 11.38 83.89 0.95 7.84 16 20 N -0.55 -20.33 11.16 -188.76 -2.11 -22.43 16 21 C 0.27 8.18 8.71 135.96 1.18 9.37 16 22 N -0.51 -7.00 5.35 -192.00 -1.03 -8.02 16 23 H 0.45 2.33 8.93 -92.71 -0.83 1.50 16 24 C 0.38 3.22 12.25 180.44 2.21 5.44 16 25 N -0.53 -9.35 10.30 -198.42 -2.04 -11.39 16 26 C 0.22 5.86 11.33 84.70 0.96 6.82 16 27 C -0.17 -5.90 6.45 -20.10 -0.13 -6.03 16 28 H 0.05 1.78 8.05 -2.38 -0.02 1.76 16 29 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 30 H 0.04 1.41 6.23 -2.38 -0.01 1.40 16 31 H 0.06 2.02 8.04 -2.39 -0.02 2.00 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 2.82 8.09 -2.39 -0.02 2.80 16 36 H 0.08 2.32 5.26 -2.39 -0.01 2.30 16 37 H 0.05 2.57 5.46 -2.39 -0.01 2.56 16 38 H 0.01 0.83 6.93 -2.39 -0.02 0.81 16 39 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.17 7.01 8.06 -2.91 -0.02 6.99 16 41 H 0.29 -2.13 8.06 -2.91 -0.02 -2.15 16 42 H 0.18 4.38 5.70 -2.91 -0.02 4.36 16 Total: -1.00 -86.98 361.08 -0.56 -87.54 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.24 Total: 11.44 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 8.03 Total: -27.36 kcal Atomic # 7 Polarization: -133.70 SS G_CDS: -6.28 Total: -139.98 kcal Atomic # 8 Polarization: -93.41 SS G_CDS: -4.26 Total: -97.67 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 119.85 SS G_CDS: -0.33 Total: 119.52 kcal Total: -86.98 -0.56 -87.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365036858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.811 kcal (2) G-P(sol) polarization free energy of solvation -86.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds