Wall clock time and date at job start Tue Mar 31 2020 20:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29518 * 121.53138 * 2 1 4 4 S 1.69479 * 107.84713 * 179.97438 * 3 2 1 5 5 C 1.72016 * 96.02653 * 0.02562 * 4 3 2 6 6 C 1.37893 * 105.36182 * 359.97438 * 5 4 3 7 7 C 1.47345 * 123.08235 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00249 * 144.74397 * 7 6 5 9 9 N 1.34773 * 120.00030 * 324.74409 * 7 6 5 10 10 C 1.47428 * 125.64747 * 4.60829 * 9 7 6 11 11 C 1.54914 * 104.83008 * 204.09104 * 10 9 7 12 12 C 1.55158 * 101.58462 * 322.99361 * 11 10 9 13 13 H 1.08995 * 110.71562 * 277.14062 * 12 11 10 14 14 N 1.46893 * 110.72242 * 154.04131 * 12 11 10 15 15 C 1.46898 * 111.00079 * 154.99764 * 14 12 11 16 16 C 1.50705 * 109.47235 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99992 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99827 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99579 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00044 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99622 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99547 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46910 * 90.00242 * 23 21 19 25 25 H 1.48503 * 109.46970 * 210.00228 * 23 21 19 26 26 H 1.48499 * 109.47205 * 330.00041 * 23 21 19 27 27 C 1.47029 * 125.64819 * 184.30163 * 9 7 6 28 28 H 1.08993 * 109.47025 * 90.02183 * 1 2 3 29 29 H 1.09003 * 109.46740 * 210.01879 * 1 2 3 30 30 H 1.08999 * 109.47483 * 330.01743 * 1 2 3 31 31 H 1.08000 * 127.31612 * 180.02562 * 5 4 3 32 32 H 1.08997 * 110.36616 * 322.93023 * 10 9 7 33 33 H 1.08993 * 110.36705 * 85.25407 * 10 9 7 34 34 H 1.09006 * 110.99903 * 81.06479 * 11 10 9 35 35 H 1.08996 * 111.00280 * 204.91364 * 11 10 9 36 36 H 1.00904 * 110.99969 * 31.04812 * 14 12 11 37 37 H 1.08997 * 109.47260 * 299.99916 * 15 14 12 38 38 H 1.08991 * 109.47262 * 60.00136 * 15 14 12 39 39 H 0.97001 * 120.00064 * 0.02562 * 18 16 15 40 40 H 0.97003 * 119.99817 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.87887 * 298.39305 * 27 9 7 42 42 H 1.08997 * 109.88315 * 59.56196 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 0.0007 5 6 3.6018 -1.0018 0.0003 6 6 2.2353 -1.1867 0.0002 7 6 1.6038 -2.5179 0.0003 8 8 0.5660 -2.6987 0.6082 9 7 2.1761 -3.5354 -0.6731 10 6 3.4750 -3.4825 -1.3686 11 6 3.3936 -4.5930 -2.4456 12 6 2.5978 -5.6949 -1.6974 13 1 3.2603 -6.2889 -1.0679 14 7 1.8795 -6.5537 -2.6484 15 6 1.6300 -7.8823 -2.0734 16 6 0.8937 -8.7333 -3.0757 17 8 0.6056 -8.2781 -4.1624 18 7 0.5563 -10.0006 -2.7650 19 6 -0.1140 -10.7746 -3.6767 20 1 -0.3713 -10.3690 -4.6440 21 6 -0.4623 -12.0811 -3.3562 22 7 -1.1044 -12.8231 -4.2303 23 14 -0.0166 -12.7829 -1.6834 24 1 -1.1196 -12.5170 -0.7252 25 1 0.1941 -14.2482 -1.8016 26 1 1.2300 -12.1415 -1.1936 27 6 1.6116 -4.8838 -0.8306 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5141 30 1 -0.3634 0.8901 0.5135 31 1 4.3658 -1.7651 0.0009 32 1 3.6147 -2.5086 -1.8377 33 1 4.2871 -3.6888 -0.6716 34 1 2.8492 -4.2462 -3.3240 35 1 4.3880 -4.9462 -2.7184 36 1 2.3813 -6.6258 -3.5208 37 1 2.5802 -8.3548 -1.8246 38 1 1.0277 -7.7803 -1.1708 39 1 0.7871 -10.3648 -1.8961 40 1 -1.3472 -13.7352 -4.0067 41 1 1.4991 -5.3549 0.1459 42 1 0.6444 -4.8247 -1.3297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490818807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:54 Heat of formation + Delta-G solvation = -9.464168 kcal Electronic energy + Delta-G solvation = -26046.253632 eV Core-core repulsion = 22153.571888 eV Total energy + Delta-G solvation = -3892.681744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90879 -39.20600 -38.42749 -37.58635 -35.01191 -33.91636 -32.39184 -31.69642 -30.84839 -29.95159 -28.82037 -26.70015 -25.20047 -23.90466 -22.90612 -21.65576 -20.46268 -19.75264 -19.42622 -18.45683 -18.09621 -17.31845 -17.02061 -15.94081 -15.70051 -15.51441 -15.21411 -14.98403 -14.86528 -14.61089 -14.15854 -13.90579 -13.73975 -13.51379 -13.18142 -13.05817 -12.80144 -12.70025 -12.54536 -12.50003 -12.21963 -11.96890 -11.81977 -11.64976 -11.49668 -11.20694 -11.15669 -11.08605 -10.62173 -10.27389 -10.08578 -10.00295 -9.60505 -9.16066 -8.94061 -8.67602 -8.32982 -8.20924 -6.33781 -3.85446 -0.00582 0.89339 1.28593 1.48248 2.47936 2.77594 2.99779 3.05254 3.13355 3.68916 3.92002 3.98548 4.01073 4.07892 4.17525 4.47110 4.52786 4.67576 4.79082 4.85885 4.92438 5.00717 5.07767 5.10736 5.20529 5.26107 5.35749 5.43234 5.51314 5.59277 5.70591 5.70751 5.82367 5.83552 5.90838 5.99690 6.21322 6.95381 7.10810 7.41577 7.54698 7.78287 8.11145 8.56148 8.91823 9.39113 9.78393 10.79200 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026975 B = 0.001958 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.734159 B =14300.102863 C =14578.523219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.165 3.835 3 N -0.466 5.466 4 S 0.285 5.715 5 C -0.179 4.179 6 C -0.201 4.201 7 C 0.600 3.400 8 O -0.524 6.524 9 N -0.607 5.607 10 C 0.096 3.904 11 C -0.137 4.137 12 C 0.075 3.925 13 H 0.063 0.937 14 N -0.657 5.657 15 C 0.046 3.954 16 C 0.449 3.551 17 O -0.565 6.565 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.115 3.885 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.193 0.807 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.358 0.642 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.371 0.629 40 H 0.274 0.726 41 H 0.070 0.930 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.901 23.398 11.342 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.013 4.013 3 N -0.287 5.287 4 S 0.441 5.559 5 C -0.328 4.328 6 C -0.223 4.223 7 C 0.386 3.614 8 O -0.401 6.401 9 N -0.341 5.341 10 C -0.028 4.028 11 C -0.175 4.175 12 C -0.036 4.036 13 H 0.081 0.919 14 N -0.291 5.291 15 C -0.086 4.086 16 C 0.234 3.766 17 O -0.447 6.447 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.520 5.520 23 Si 0.707 3.293 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.008 4.008 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.210 0.790 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.179 0.821 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.275 25.771 11.062 31.469 hybrid contribution 0.565 -2.908 1.272 3.224 sum 14.840 22.863 12.335 29.918 Atomic orbital electron populations 1.20940 0.85470 1.05808 1.04298 1.21403 0.99531 0.86573 0.93751 1.76496 1.00252 1.26069 1.25889 1.84104 1.10791 0.95548 1.65472 1.27581 0.99284 1.04691 1.01231 1.20320 0.92373 0.95844 1.13779 1.16916 0.83704 0.82041 0.78714 1.90777 1.23401 1.82828 1.43094 1.48242 1.21449 1.11983 1.52402 1.22529 0.85592 1.00348 0.94311 1.23030 1.01301 0.94818 0.98387 1.22525 0.93107 0.93809 0.94152 0.91867 1.59945 1.51640 1.11681 1.05847 1.21804 0.99418 0.89226 0.98192 1.19652 0.85299 0.82598 0.89003 1.90571 1.57772 1.72190 1.24124 1.42204 1.52735 1.11790 1.16124 1.19429 1.31577 0.93766 0.98663 0.86254 1.25054 0.97098 0.96076 0.97964 1.69623 1.38673 1.09190 1.34495 0.86665 0.78913 0.79686 0.84063 1.19538 1.20181 1.19552 1.22092 0.98550 0.80349 0.99819 0.89728 0.87197 0.90113 0.79022 0.90074 0.90974 0.88964 0.89397 0.82113 0.93464 0.89322 0.79673 0.91576 0.91208 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.93 36.00 0.36 -0.61 16 2 C 0.17 1.69 6.74 -83.20 -0.56 1.13 16 3 N -0.47 -4.77 11.97 32.50 0.39 -4.38 16 4 S 0.29 2.00 23.69 -107.50 -2.55 -0.55 16 5 C -0.18 -1.17 9.24 30.61 0.28 -0.89 16 6 C -0.20 -1.93 5.47 -105.95 -0.58 -2.51 16 7 C 0.60 6.92 7.41 -12.56 -0.09 6.83 16 8 O -0.52 -7.69 14.86 5.27 0.08 -7.61 16 9 N -0.61 -5.97 3.33 -171.80 -0.57 -6.54 16 10 C 0.10 0.60 5.26 -2.52 -0.01 0.59 16 11 C -0.14 -0.97 6.47 -24.58 -0.16 -1.13 16 12 C 0.08 0.73 3.27 -65.88 -0.22 0.51 16 13 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 14 N -0.66 -8.95 5.96 -106.06 -0.63 -9.58 16 15 C 0.05 0.70 6.03 -4.97 -0.03 0.67 16 16 C 0.45 9.79 7.82 -10.98 -0.09 9.70 16 17 O -0.56 -14.70 15.78 5.55 0.09 -14.61 16 18 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 19 C -0.31 -8.52 10.16 -14.93 -0.15 -8.68 16 20 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 23 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C 0.11 1.27 6.64 -3.05 -0.02 1.25 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.11 1.18 5.57 -51.93 -0.29 0.89 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.19 0.69 6.21 -52.49 -0.33 0.36 16 32 H 0.08 0.43 6.56 -51.93 -0.34 0.09 16 33 H 0.07 0.30 7.53 -51.93 -0.39 -0.09 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.36 4.95 8.13 -39.29 -0.32 4.63 16 37 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.37 7.52 5.76 -40.82 -0.24 7.28 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 1.21 8.03 -51.93 -0.42 0.80 16 LS Contribution 361.32 15.07 5.45 5.45 Total: -1.00 -34.84 361.32 -8.35 -43.19 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.24 Total: 10.84 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.36 Total: 7.88 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.10 Total: -58.94 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.17 Total: -22.23 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.55 Total: -0.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.84 -8.35 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490818807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.723 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds