Wall clock time and date at job start Tue Mar 31 2020 20:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29518 * 121.53138 * 2 1 4 4 S 1.69479 * 107.84713 * 179.97438 * 3 2 1 5 5 C 1.72016 * 96.02653 * 0.02562 * 4 3 2 6 6 C 1.37893 * 105.36182 * 359.97438 * 5 4 3 7 7 C 1.47345 * 123.08235 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00249 * 144.74397 * 7 6 5 9 9 N 1.34773 * 120.00030 * 324.74409 * 7 6 5 10 10 C 1.47428 * 125.64747 * 4.60829 * 9 7 6 11 11 C 1.54914 * 104.83008 * 204.09104 * 10 9 7 12 12 C 1.55158 * 101.58462 * 322.99361 * 11 10 9 13 13 H 1.08995 * 110.71562 * 277.14062 * 12 11 10 14 14 N 1.46893 * 110.72242 * 154.04131 * 12 11 10 15 15 C 1.46898 * 111.00079 * 154.99764 * 14 12 11 16 16 C 1.50705 * 109.47235 * 180.02562 * 15 14 12 17 17 O 1.21288 * 119.99992 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99827 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99579 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00044 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99622 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99547 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00079 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46910 * 90.00242 * 23 21 19 25 25 H 1.48503 * 109.46970 * 210.00228 * 23 21 19 26 26 H 1.48499 * 109.47205 * 330.00041 * 23 21 19 27 27 C 1.47029 * 125.64819 * 184.30163 * 9 7 6 28 28 H 1.08993 * 109.47025 * 90.02183 * 1 2 3 29 29 H 1.09003 * 109.46740 * 210.01879 * 1 2 3 30 30 H 1.08999 * 109.47483 * 330.01743 * 1 2 3 31 31 H 1.08000 * 127.31612 * 180.02562 * 5 4 3 32 32 H 1.08997 * 110.36616 * 322.93023 * 10 9 7 33 33 H 1.08993 * 110.36705 * 85.25407 * 10 9 7 34 34 H 1.09006 * 110.99903 * 81.06479 * 11 10 9 35 35 H 1.08996 * 111.00280 * 204.91364 * 11 10 9 36 36 H 1.00904 * 110.99969 * 31.04812 * 14 12 11 37 37 H 1.08997 * 109.47260 * 299.99916 * 15 14 12 38 38 H 1.08991 * 109.47262 * 60.00136 * 15 14 12 39 39 H 0.97001 * 120.00064 * 0.02562 * 18 16 15 40 40 H 0.97003 * 119.99817 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.87887 * 298.39305 * 27 9 7 42 42 H 1.08997 * 109.88315 * 59.56196 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 0.0007 5 6 3.6018 -1.0018 0.0003 6 6 2.2353 -1.1867 0.0002 7 6 1.6038 -2.5179 0.0003 8 8 0.5660 -2.6987 0.6082 9 7 2.1761 -3.5354 -0.6731 10 6 3.4750 -3.4825 -1.3686 11 6 3.3936 -4.5930 -2.4456 12 6 2.5978 -5.6949 -1.6974 13 1 3.2603 -6.2889 -1.0679 14 7 1.8795 -6.5537 -2.6484 15 6 1.6300 -7.8823 -2.0734 16 6 0.8937 -8.7333 -3.0757 17 8 0.6056 -8.2781 -4.1624 18 7 0.5563 -10.0006 -2.7650 19 6 -0.1140 -10.7746 -3.6767 20 1 -0.3713 -10.3690 -4.6440 21 6 -0.4623 -12.0811 -3.3562 22 7 -1.1044 -12.8231 -4.2303 23 14 -0.0166 -12.7829 -1.6834 24 1 -1.1196 -12.5170 -0.7252 25 1 0.1941 -14.2482 -1.8016 26 1 1.2300 -12.1415 -1.1936 27 6 1.6116 -4.8838 -0.8306 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 -0.8899 0.5141 30 1 -0.3634 0.8901 0.5135 31 1 4.3658 -1.7651 0.0009 32 1 3.6147 -2.5086 -1.8377 33 1 4.2871 -3.6888 -0.6716 34 1 2.8492 -4.2462 -3.3240 35 1 4.3880 -4.9462 -2.7184 36 1 2.3813 -6.6258 -3.5208 37 1 2.5802 -8.3548 -1.8246 38 1 1.0277 -7.7803 -1.1708 39 1 0.7871 -10.3648 -1.8961 40 1 -1.3472 -13.7352 -4.0067 41 1 1.4991 -5.3549 0.1459 42 1 0.6444 -4.8247 -1.3297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490818807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:53 Heat of formation + Delta-G solvation = -38.049153 kcal Electronic energy + Delta-G solvation = -26047.493170 eV Core-core repulsion = 22153.571888 eV Total energy + Delta-G solvation = -3893.921282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65151 -40.37403 -39.68210 -38.49342 -36.26774 -35.65133 -33.74831 -33.11494 -31.61130 -30.66271 -29.68923 -28.06018 -26.22633 -25.24197 -23.66710 -22.36888 -21.27731 -21.24142 -20.42983 -20.23665 -18.83956 -18.17669 -17.78128 -17.48106 -16.89512 -16.52627 -16.35637 -16.03893 -15.76998 -15.65168 -15.30117 -14.92582 -14.75737 -14.57077 -14.44784 -14.31639 -13.82163 -13.79305 -13.58291 -13.37639 -13.28572 -13.15329 -12.86463 -12.61414 -12.40511 -12.32477 -12.20623 -11.96996 -11.82238 -11.77504 -11.50961 -11.04623 -10.78396 -10.43271 -10.24380 -9.84468 -9.62510 -9.39173 -8.40813 -6.01737 -0.59481 0.33046 0.64945 0.74893 1.30371 1.36852 1.45153 1.71193 1.96550 2.02668 2.23684 2.73973 3.15716 3.29362 3.41937 3.43673 3.58977 3.81358 3.91249 4.14569 4.19677 4.25362 4.29078 4.33033 4.40883 4.47189 4.55783 4.58562 4.59385 4.63565 4.78747 4.89597 4.99935 5.09249 5.14285 5.26665 5.52947 5.53635 5.91393 6.05303 6.34386 6.42148 6.60106 6.88782 6.98357 7.40513 7.97148 8.76781 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.026975 B = 0.001958 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.734159 B =14300.102863 C =14578.523219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.153 3.847 3 N -0.504 5.504 4 S 0.333 5.667 5 C -0.152 4.152 6 C -0.228 4.228 7 C 0.596 3.404 8 O -0.570 6.570 9 N -0.606 5.606 10 C 0.092 3.908 11 C -0.130 4.130 12 C 0.081 3.919 13 H 0.092 0.908 14 N -0.680 5.680 15 C 0.062 3.938 16 C 0.448 3.552 17 O -0.615 6.615 18 N -0.591 5.591 19 C -0.328 4.328 20 H 0.055 0.945 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.227 1.227 27 C 0.114 3.886 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.355 0.645 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.068 0.932 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.068 23.912 14.211 33.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.024 4.024 3 N -0.325 5.325 4 S 0.488 5.512 5 C -0.301 4.301 6 C -0.250 4.250 7 C 0.384 3.616 8 O -0.450 6.450 9 N -0.338 5.338 10 C -0.030 4.030 11 C -0.168 4.168 12 C -0.029 4.029 13 H 0.110 0.890 14 N -0.314 5.314 15 C -0.070 4.070 16 C 0.236 3.764 17 O -0.499 6.499 18 N -0.233 5.233 19 C -0.457 4.457 20 H 0.073 0.927 21 C -0.216 4.216 22 N -0.575 5.575 23 Si 0.785 3.215 24 H -0.185 1.185 25 H -0.201 1.201 26 H -0.151 1.151 27 C -0.009 4.009 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.246 0.754 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.176 0.824 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.485 26.313 13.929 35.044 hybrid contribution -0.692 -2.926 0.239 3.016 sum 17.793 23.387 14.168 32.623 Atomic orbital electron populations 1.20861 0.86029 1.05170 1.04282 1.21454 0.99720 0.87053 0.94176 1.76330 1.02513 1.26714 1.26965 1.83952 1.08157 0.95157 1.63904 1.28006 0.98617 1.05534 0.97922 1.20147 0.93562 0.94507 1.16750 1.17232 0.83250 0.82892 0.78255 1.90749 1.25443 1.83605 1.45234 1.48303 1.22582 1.11055 1.51880 1.22863 0.84622 1.00867 0.94622 1.23039 1.02119 0.94002 0.97678 1.22572 0.92764 0.93817 0.93786 0.89011 1.59842 1.53438 1.11351 1.06792 1.21711 1.00366 0.88933 0.96019 1.21026 0.83642 0.82316 0.89441 1.90550 1.59272 1.73158 1.26946 1.42041 1.52969 1.12137 1.16162 1.19000 1.33807 0.95155 0.97771 0.92707 1.26146 0.96188 0.95755 1.03489 1.69810 1.40140 1.09887 1.37707 0.85359 0.80536 0.78570 0.77014 1.18474 1.20068 1.15057 1.21994 0.97704 0.81561 0.99675 0.89492 0.88998 0.89462 0.75425 0.88710 0.87282 0.90759 0.86343 0.82382 0.89508 0.87368 0.77442 0.91182 0.91334 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 9.93 71.23 0.71 -1.31 16 2 C 0.15 3.08 6.74 43.14 0.29 3.37 16 3 N -0.50 -9.79 11.97 -51.09 -0.61 -10.40 16 4 S 0.33 3.70 23.69 -56.49 -1.34 2.36 16 5 C -0.15 -1.44 9.24 67.74 0.63 -0.81 16 6 C -0.23 -4.04 5.47 -20.72 -0.11 -4.15 16 7 C 0.60 13.40 7.41 86.64 0.64 14.04 16 8 O -0.57 -17.38 14.86 -4.08 -0.06 -17.44 16 9 N -0.61 -10.74 3.33 -815.72 -2.71 -13.46 16 10 C 0.09 0.76 5.26 86.86 0.46 1.22 16 11 C -0.13 -1.37 6.47 31.99 0.21 -1.16 16 12 C 0.08 1.30 3.27 46.11 0.15 1.46 16 13 H 0.09 1.05 7.82 -2.39 -0.02 1.04 16 14 N -0.68 -17.30 5.96 -489.46 -2.92 -20.22 16 15 C 0.06 1.70 6.03 85.56 0.52 2.22 16 16 C 0.45 19.44 7.82 87.66 0.69 20.13 16 17 O -0.61 -33.27 15.78 -3.05 -0.05 -33.32 16 18 N -0.59 -27.22 5.09 -306.98 -1.56 -28.78 16 19 C -0.33 -19.05 10.16 84.04 0.85 -18.20 16 20 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16 21 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 22 N -0.93 -56.25 13.96 21.66 0.30 -55.95 16 23 Si 0.97 38.29 27.74 68.60 1.90 40.19 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 27 C 0.11 2.38 6.64 86.73 0.58 2.96 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 2.17 5.57 -2.39 -0.01 2.16 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 31 H 0.23 0.29 6.21 -2.91 -0.02 0.28 16 32 H 0.09 0.58 6.56 -2.39 -0.02 0.56 16 33 H 0.11 0.20 7.53 -2.39 -0.02 0.18 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.36 9.35 8.13 -89.69 -0.73 8.62 16 37 H 0.09 1.78 8.08 -2.39 -0.02 1.76 16 38 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.39 14.70 5.76 -92.71 -0.53 14.17 16 40 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.48 8.03 -2.39 -0.02 1.46 16 Total: -1.00 -85.41 361.32 -1.21 -86.62 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.23 Total: 31.13 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 6.07 Total: 19.26 kcal Atomic # 7 Polarization: -121.30 SS G_CDS: -7.50 Total: -128.80 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.11 Total: -50.75 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.34 Total: 2.36 kcal Total: -85.41 -1.21 -86.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490818807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.567 kcal (2) G-P(sol) polarization free energy of solvation -85.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds