Wall clock time and date at job start Tue Mar 31 2020 21:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29430 * 124.80513 * 2 1 4 4 C 1.30936 * 117.36901 * 179.97438 * 3 2 1 5 5 C 1.35665 * 114.18961 * 359.97438 * 4 3 2 6 6 C 1.46681 * 126.13154 * 179.73766 * 5 4 3 7 7 O 1.21688 * 119.99830 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00295 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00181 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.85377 * 334.67255 * 9 8 6 11 11 C 1.53785 * 113.61482 * 105.86433 * 9 8 6 12 12 C 1.54053 * 86.98418 * 89.16359 * 11 9 8 13 13 H 1.08999 * 113.61061 * 270.88654 * 12 11 9 14 14 N 1.46896 * 113.69685 * 139.99276 * 12 11 9 15 15 C 1.46904 * 110.99965 * 107.46456 * 14 12 11 16 16 C 1.50704 * 109.46985 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99742 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00000 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99948 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00063 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99747 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00286 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46968 * 59.99926 * 23 21 19 25 25 H 1.48496 * 109.47369 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47243 * 300.00009 * 23 21 19 27 27 C 1.53779 * 87.07711 * 25.43088 * 12 11 9 28 28 S 1.70956 * 124.80789 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47315 * 90.02875 * 1 2 3 30 30 H 1.09004 * 109.46568 * 210.02386 * 1 2 3 31 31 H 1.09000 * 109.47320 * 330.02459 * 1 2 3 32 32 H 1.07998 * 122.91035 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99705 * 0.02562 * 8 6 5 34 34 H 1.08996 * 113.61406 * 203.66779 * 11 9 8 35 35 H 1.09001 * 113.61434 * 334.57053 * 11 9 8 36 36 H 1.00902 * 110.99938 * 231.41785 * 14 12 11 37 37 H 1.08993 * 109.47139 * 299.99623 * 15 14 12 38 38 H 1.08999 * 109.47131 * 60.00341 * 15 14 12 39 39 H 0.96999 * 120.00238 * 359.97438 * 18 16 15 40 40 H 0.97000 * 119.99877 * 180.02562 * 22 21 19 41 41 H 1.08996 * 113.61730 * 220.02175 * 27 12 11 42 42 H 1.08999 * 113.68657 * 89.13122 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8933 0.0005 5 6 3.9351 -0.4058 0.0015 6 6 5.3188 -0.8925 -0.0031 7 8 6.2425 -0.1002 -0.0080 8 7 5.5673 -2.2171 -0.0020 9 6 6.9493 -2.7032 -0.0061 10 1 7.6484 -1.9878 -0.4393 11 6 7.4074 -3.2689 1.3486 12 6 6.8707 -4.6310 0.8693 13 1 5.8209 -4.7964 1.1116 14 7 7.7270 -5.7661 1.2385 15 6 7.1109 -6.5647 2.3065 16 6 8.0159 -7.7176 2.6573 17 8 9.0705 -7.8596 2.0751 18 7 7.6534 -8.5908 3.6178 19 6 8.4769 -9.6393 3.9372 20 1 9.4160 -9.7658 3.4189 21 6 8.1034 -10.5392 4.9278 22 7 6.9611 -10.3850 5.5588 23 14 9.2251 -11.9683 5.3626 24 1 10.5349 -11.4456 5.8280 25 1 8.6022 -12.7760 6.4418 26 1 9.4298 -12.8196 4.1632 27 6 7.0997 -4.1277 -0.5656 28 16 2.4828 -1.4037 0.0006 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.2433 1.7164 0.0002 33 1 4.8311 -2.8487 0.0016 34 1 8.4884 -3.2497 1.4868 35 1 6.8635 -2.8586 2.1995 36 1 7.9360 -6.3380 0.4340 37 1 6.9604 -5.9398 3.1867 38 1 6.1498 -6.9488 1.9647 39 1 6.8102 -8.4770 4.0836 40 1 6.7006 -11.0131 6.2506 41 1 6.3077 -4.4102 -1.2591 42 1 8.0964 -4.3424 -0.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490872920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:24 Heat of formation + Delta-G solvation = -3.040875 kcal Electronic energy + Delta-G solvation = -25184.855011 eV Core-core repulsion = 21292.451802 eV Total energy + Delta-G solvation = -3892.403209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76094 -40.01602 -38.65057 -37.95711 -34.67267 -33.87330 -33.00225 -32.35651 -31.20829 -29.24448 -26.94924 -25.85794 -25.09769 -24.37071 -23.19300 -22.19970 -20.12994 -19.64363 -19.13890 -18.89043 -17.89833 -17.22720 -16.62886 -16.10176 -15.81446 -15.53360 -15.29509 -14.89384 -14.86961 -14.61494 -14.46029 -14.16338 -13.97361 -13.76928 -13.39394 -13.14702 -12.96801 -12.61915 -12.44947 -12.14359 -12.06881 -11.95383 -11.59575 -11.40095 -11.03691 -10.68429 -10.65694 -10.57188 -10.45296 -10.22445 -10.19510 -10.03120 -9.51533 -9.47955 -9.32097 -8.46791 -8.10854 -7.97624 -6.43123 -3.84039 -0.26200 0.63296 1.04309 1.98555 2.64381 2.77615 3.19162 3.24890 3.29353 3.55411 3.89097 4.09324 4.27790 4.33930 4.36723 4.41076 4.44940 4.77271 4.79118 4.83213 4.88283 4.91789 5.17528 5.24529 5.27823 5.35297 5.54036 5.60186 5.65261 5.71270 5.80017 5.85827 5.99094 6.03410 6.21643 6.35312 6.97805 7.12775 7.22909 7.53679 7.62568 7.72582 8.04632 8.59652 9.16303 9.52643 10.04066 10.74517 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.001825 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.312593 B =15342.773011 C =16442.559441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.063 3.937 3 N -0.481 5.481 4 C 0.125 3.875 5 C -0.296 4.296 6 C 0.600 3.400 7 O -0.522 6.522 8 N -0.706 5.706 9 C 0.118 3.882 10 H 0.109 0.891 11 C -0.135 4.135 12 C 0.059 3.941 13 H 0.069 0.931 14 N -0.655 5.655 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.147 4.147 28 S 0.165 5.835 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.190 0.810 33 H 0.398 0.602 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.351 0.649 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.071 0.929 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 19.211 -12.238 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.212 4.212 3 N -0.195 5.195 4 C -0.033 4.033 5 C -0.421 4.421 6 C 0.385 3.615 7 O -0.399 6.399 8 N -0.356 5.356 9 C 0.013 3.987 10 H 0.127 0.873 11 C -0.174 4.174 12 C -0.052 4.052 13 H 0.086 0.914 14 N -0.287 5.287 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.185 4.185 28 S 0.421 5.579 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.206 0.794 33 H 0.232 0.768 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.172 0.828 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.462 19.305 -12.046 26.962 hybrid contribution -0.569 -0.768 0.232 0.984 sum -15.031 18.537 -11.814 26.630 Atomic orbital electron populations 1.20576 0.84496 1.04883 1.04456 1.27549 1.02364 0.90921 1.00333 1.66251 1.04810 1.31130 1.17343 1.22219 0.90742 0.95558 0.94755 1.25754 0.97867 0.97938 1.20501 1.16666 0.85976 0.82519 0.76303 1.90861 1.44237 1.55077 1.49733 1.45598 1.08847 1.06114 1.75064 1.21841 0.82446 0.95769 0.98671 0.87323 1.23605 1.02966 0.94695 0.96177 1.23161 0.95299 0.92023 0.94734 0.91367 1.60200 1.43885 1.11623 1.12994 1.21738 0.95441 0.94971 0.96147 1.19816 0.88482 0.85009 0.84153 1.90523 1.25274 1.75962 1.55000 1.41861 1.20995 1.24137 1.33010 1.19659 1.02756 1.02517 1.18030 0.87959 1.25266 0.96910 0.99365 0.96415 1.69603 1.21401 1.38208 1.25141 0.85909 0.79749 0.80411 0.78102 1.19859 1.20979 1.19922 1.23610 1.03865 0.94337 0.96724 1.83954 0.96571 1.11504 1.65869 0.88926 0.89531 0.88695 0.79359 0.76760 0.87814 0.91421 0.82833 0.89662 0.93929 0.77478 0.91816 0.90996 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.46 36.00 0.38 0.09 16 2 C 0.06 0.43 7.39 -13.29 -0.10 0.34 16 3 N -0.48 -4.43 10.51 -11.50 -0.12 -4.55 16 4 C 0.12 1.18 11.09 -18.85 -0.21 0.97 16 5 C -0.30 -2.74 6.48 -37.10 -0.24 -2.98 16 6 C 0.60 6.59 7.79 -12.85 -0.10 6.49 16 7 O -0.52 -7.43 16.48 5.20 0.09 -7.34 16 8 N -0.71 -6.42 5.26 -54.32 -0.29 -6.71 16 9 C 0.12 1.16 4.30 -67.12 -0.29 0.88 16 10 H 0.11 1.17 7.50 -51.93 -0.39 0.78 16 11 C -0.13 -1.53 7.70 -25.77 -0.20 -1.73 16 12 C 0.06 0.66 4.03 -66.76 -0.27 0.39 16 13 H 0.07 0.70 7.87 -51.93 -0.41 0.30 16 14 N -0.65 -10.04 6.19 -106.98 -0.66 -10.70 16 15 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 16 C 0.44 10.29 7.82 -10.98 -0.09 10.20 16 17 O -0.58 -15.73 15.78 5.55 0.09 -15.64 16 18 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 C -0.15 -1.34 7.39 -25.92 -0.19 -1.53 16 28 S 0.17 1.05 22.31 -107.50 -2.40 -1.34 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.40 2.85 7.89 -40.82 -0.32 2.52 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.35 5.50 8.25 -39.29 -0.32 5.18 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -34.08 377.56 -9.04 -43.12 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.50 Total: 13.53 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.58 Total: 5.94 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.40 Total: -59.91 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.40 Total: -1.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.08 -9.04 -43.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490872920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.078 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds