Wall clock time and date at job start Tue Mar 31 2020 21:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29430 * 124.80513 * 2 1 4 4 C 1.30936 * 117.36901 * 179.97438 * 3 2 1 5 5 C 1.35665 * 114.18961 * 359.97438 * 4 3 2 6 6 C 1.46681 * 126.13154 * 179.73766 * 5 4 3 7 7 O 1.21688 * 119.99830 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00295 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00181 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.85377 * 334.67255 * 9 8 6 11 11 C 1.53785 * 113.61482 * 105.86433 * 9 8 6 12 12 C 1.54053 * 86.98418 * 89.16359 * 11 9 8 13 13 H 1.08999 * 113.61061 * 270.88654 * 12 11 9 14 14 N 1.46896 * 113.69685 * 139.99276 * 12 11 9 15 15 C 1.46904 * 110.99965 * 107.46456 * 14 12 11 16 16 C 1.50704 * 109.46985 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99742 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00000 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99948 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00063 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99747 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00286 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99951 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46968 * 59.99926 * 23 21 19 25 25 H 1.48496 * 109.47369 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47243 * 300.00009 * 23 21 19 27 27 C 1.53779 * 87.07711 * 25.43088 * 12 11 9 28 28 S 1.70956 * 124.80789 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47315 * 90.02875 * 1 2 3 30 30 H 1.09004 * 109.46568 * 210.02386 * 1 2 3 31 31 H 1.09000 * 109.47320 * 330.02459 * 1 2 3 32 32 H 1.07998 * 122.91035 * 179.97438 * 4 3 2 33 33 H 0.96997 * 119.99705 * 0.02562 * 8 6 5 34 34 H 1.08996 * 113.61406 * 203.66779 * 11 9 8 35 35 H 1.09001 * 113.61434 * 334.57053 * 11 9 8 36 36 H 1.00902 * 110.99938 * 231.41785 * 14 12 11 37 37 H 1.08993 * 109.47139 * 299.99623 * 15 14 12 38 38 H 1.08999 * 109.47131 * 60.00341 * 15 14 12 39 39 H 0.96999 * 120.00238 * 359.97438 * 18 16 15 40 40 H 0.97000 * 119.99877 * 180.02562 * 22 21 19 41 41 H 1.08996 * 113.61730 * 220.02175 * 27 12 11 42 42 H 1.08999 * 113.68657 * 89.13122 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8933 0.0005 5 6 3.9351 -0.4058 0.0015 6 6 5.3188 -0.8925 -0.0031 7 8 6.2425 -0.1002 -0.0080 8 7 5.5673 -2.2171 -0.0020 9 6 6.9493 -2.7032 -0.0061 10 1 7.6484 -1.9878 -0.4393 11 6 7.4074 -3.2689 1.3486 12 6 6.8707 -4.6310 0.8693 13 1 5.8209 -4.7964 1.1116 14 7 7.7270 -5.7661 1.2385 15 6 7.1109 -6.5647 2.3065 16 6 8.0159 -7.7176 2.6573 17 8 9.0705 -7.8596 2.0751 18 7 7.6534 -8.5908 3.6178 19 6 8.4769 -9.6393 3.9372 20 1 9.4160 -9.7658 3.4189 21 6 8.1034 -10.5392 4.9278 22 7 6.9611 -10.3850 5.5588 23 14 9.2251 -11.9683 5.3626 24 1 10.5349 -11.4456 5.8280 25 1 8.6022 -12.7760 6.4418 26 1 9.4298 -12.8196 4.1632 27 6 7.0997 -4.1277 -0.5656 28 16 2.4828 -1.4037 0.0006 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 4.2433 1.7164 0.0002 33 1 4.8311 -2.8487 0.0016 34 1 8.4884 -3.2497 1.4868 35 1 6.8635 -2.8586 2.1995 36 1 7.9360 -6.3380 0.4340 37 1 6.9604 -5.9398 3.1867 38 1 6.1498 -6.9488 1.9647 39 1 6.8102 -8.4770 4.0836 40 1 6.7006 -11.0131 6.2506 41 1 6.3077 -4.4102 -1.2591 42 1 8.0964 -4.3424 -0.9511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490872920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:23 Heat of formation + Delta-G solvation = -30.095076 kcal Electronic energy + Delta-G solvation = -25186.028169 eV Core-core repulsion = 21292.451802 eV Total energy + Delta-G solvation = -3893.576367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54864 -40.74900 -40.10344 -39.23801 -36.14734 -35.47493 -33.88084 -33.25769 -33.00683 -29.84256 -28.44769 -26.72720 -26.26631 -25.46348 -24.18757 -23.02037 -21.15043 -20.85675 -20.31369 -19.87785 -19.52423 -17.96724 -17.84192 -17.22768 -16.87841 -16.54294 -16.43868 -16.23636 -15.95207 -15.74441 -15.45347 -15.37925 -15.11326 -14.81001 -14.48507 -14.14056 -13.54543 -13.51555 -13.37967 -13.28616 -13.25238 -13.12195 -12.88622 -12.71900 -12.55248 -12.42692 -12.12325 -11.56425 -11.54800 -11.49383 -11.43074 -10.81816 -10.65462 -10.34282 -10.21245 -10.01459 -9.93636 -9.30865 -8.46471 -5.95191 -0.87320 0.08138 0.45923 1.30441 1.40050 1.42102 1.52862 1.87481 2.01590 2.05804 2.29454 2.96096 3.07122 3.20941 3.46686 3.49793 3.61104 3.68785 3.93542 3.95054 4.10075 4.17420 4.30245 4.47462 4.54640 4.59616 4.60037 4.66145 4.78789 4.85485 4.90795 4.93211 5.04486 5.10791 5.15372 5.40702 5.44826 5.93150 6.15716 6.25300 6.44332 6.52737 6.60469 6.94511 7.12787 7.56682 8.12001 8.70607 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018910 B = 0.001825 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.312593 B =15342.773011 C =16442.559441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.062 3.938 3 N -0.509 5.509 4 C 0.119 3.881 5 C -0.324 4.324 6 C 0.600 3.400 7 O -0.564 6.564 8 N -0.694 5.694 9 C 0.124 3.876 10 H 0.098 0.902 11 C -0.138 4.138 12 C 0.059 3.941 13 H 0.089 0.911 14 N -0.670 5.670 15 C 0.065 3.935 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.131 4.131 28 S 0.221 5.779 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.185 0.815 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.348 0.652 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.095 0.905 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.891 18.554 -12.588 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.212 4.212 3 N -0.225 5.225 4 C -0.039 4.039 5 C -0.449 4.449 6 C 0.387 3.613 7 O -0.444 6.444 8 N -0.345 5.345 9 C 0.019 3.981 10 H 0.116 0.884 11 C -0.178 4.178 12 C -0.051 4.051 13 H 0.107 0.893 14 N -0.303 5.303 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.169 4.169 28 S 0.478 5.522 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.201 0.799 33 H 0.247 0.753 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.169 0.831 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.771 18.631 -12.394 27.964 hybrid contribution 0.058 -0.518 0.322 0.612 sum -16.712 18.114 -12.073 27.444 Atomic orbital electron populations 1.20809 0.81982 1.06048 1.05837 1.28237 1.03895 0.90825 0.98207 1.66308 1.04724 1.32413 1.19038 1.22275 0.91181 0.95830 0.94662 1.25636 0.98284 0.98756 1.22182 1.16904 0.86329 0.82627 0.75478 1.90833 1.45704 1.56115 1.51779 1.45471 1.08916 1.05822 1.74247 1.21690 0.82684 0.96013 0.97762 0.88397 1.23584 1.02121 0.95255 0.96853 1.23286 0.95611 0.90016 0.96183 0.89332 1.60160 1.45422 1.12071 1.12668 1.21590 0.94840 0.92847 0.97457 1.20932 0.88572 0.85567 0.82522 1.90492 1.27377 1.77107 1.56039 1.41934 1.20991 1.24290 1.33835 1.19631 1.02941 1.04532 1.19342 0.90336 1.26036 0.98266 1.01277 0.95727 1.69661 1.22227 1.38970 1.25207 0.84995 0.77884 0.77393 0.78107 1.19873 1.19477 1.19605 1.23518 1.04698 0.92852 0.95877 1.83659 0.94063 1.09785 1.64685 0.87247 0.87360 0.88514 0.79859 0.75336 0.89299 0.91814 0.83140 0.88379 0.91094 0.76961 0.91286 0.88657 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.46 71.23 0.75 0.40 16 2 C 0.06 0.73 7.39 88.46 0.65 1.39 16 3 N -0.51 -9.02 10.51 -190.31 -2.00 -11.02 16 4 C 0.12 2.26 11.09 84.23 0.93 3.20 16 5 C -0.32 -5.78 6.48 23.88 0.15 -5.63 16 6 C 0.60 12.98 7.79 86.45 0.67 13.66 16 7 O -0.56 -16.53 16.48 -4.31 -0.07 -16.60 16 8 N -0.69 -11.61 5.26 -444.00 -2.34 -13.94 16 9 C 0.12 2.32 4.30 45.52 0.20 2.51 16 10 H 0.10 2.11 7.50 -2.39 -0.02 2.09 16 11 C -0.14 -3.02 7.70 31.22 0.24 -2.78 16 12 C 0.06 1.20 4.03 45.53 0.18 1.38 16 13 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 14 N -0.67 -19.63 6.19 -492.38 -3.05 -22.68 16 15 C 0.07 2.13 6.01 85.56 0.51 2.64 16 16 C 0.44 20.42 7.82 87.66 0.69 21.11 16 17 O -0.62 -34.20 15.78 -3.07 -0.05 -34.25 16 18 N -0.57 -29.09 5.29 -306.99 -1.62 -30.72 16 19 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 23 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 C -0.13 -2.10 7.39 31.12 0.23 -1.87 16 28 S 0.22 2.30 22.31 -56.49 -1.26 1.04 16 29 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 30 H 0.11 -0.02 8.14 -2.38 -0.02 -0.04 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.41 4.78 7.89 -92.71 -0.73 4.05 16 34 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.35 10.52 8.25 -89.69 -0.74 9.78 16 37 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 39 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 40 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -75.21 377.56 -2.69 -77.91 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -1.11 Total: 36.83 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.49 Total: 17.64 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -8.72 Total: -127.27 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.12 Total: -50.85 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.26 Total: 1.04 kcal Total: -75.21 -2.69 -77.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490872920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.812 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds