Wall clock time and date at job start Tue Mar 31 2020 20:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30454 * 125.98786 * 2 1 4 4 N 1.39935 * 108.89418 * 180.26022 * 3 2 1 5 5 H 0.97002 * 125.75430 * 179.77412 * 4 3 2 6 6 C 1.34258 * 108.49320 * 359.75501 * 4 3 2 7 7 C 1.38046 * 107.41759 * 359.97438 * 6 4 3 8 8 C 1.47432 * 126.41102 * 179.97438 * 7 6 4 9 9 O 1.21612 * 119.99341 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00533 * 0.03064 * 8 7 6 11 11 C 1.47024 * 125.64622 * 359.95798 * 10 8 7 12 12 C 1.54364 * 107.28778 * 181.12815 * 11 10 8 13 13 C 1.55150 * 102.92467 * 22.13781 * 12 11 10 14 14 H 1.08998 * 111.00640 * 82.64069 * 13 12 11 15 15 N 1.46500 * 111.00730 * 206.45445 * 13 12 11 16 16 C 1.34779 * 120.00169 * 201.81530 * 15 13 12 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46881 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99705 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00469 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46939 * 90.00148 * 24 22 20 26 26 H 1.48496 * 109.47561 * 210.00294 * 24 22 20 27 27 H 1.48498 * 109.46932 * 330.00626 * 24 22 20 28 28 C 1.47419 * 125.65351 * 179.97438 * 10 8 7 29 29 H 1.08999 * 109.47272 * 270.14441 * 1 2 3 30 30 H 1.09004 * 109.47431 * 30.14430 * 1 2 3 31 31 H 1.08999 * 109.47271 * 150.14498 * 1 2 3 32 32 H 1.07996 * 126.29027 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.88050 * 300.51108 * 11 10 8 34 34 H 1.09002 * 109.88732 * 61.67586 * 11 10 8 35 35 H 1.09002 * 110.70704 * 263.78754 * 12 11 10 36 36 H 1.09000 * 110.75869 * 140.50384 * 12 11 10 37 37 H 0.96996 * 119.99986 * 21.82127 * 15 13 12 38 38 H 1.09000 * 109.47247 * 60.00371 * 18 16 15 39 39 H 1.09001 * 109.47358 * 299.99798 * 18 16 15 40 40 H 0.96996 * 119.99710 * 179.97438 * 23 22 20 41 41 H 1.09005 * 110.36922 * 36.99681 * 28 10 8 42 42 H 1.09000 * 110.36549 * 274.67596 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 -0.0060 5 1 4.3842 1.2301 -0.0104 6 6 3.6439 -0.6979 -0.0043 7 6 2.3372 -1.1432 0.0034 8 6 1.8916 -2.5485 0.0073 9 8 0.7039 -2.8097 0.0136 10 7 2.8004 -3.5437 0.0039 11 6 4.2604 -3.3708 -0.0045 12 6 4.8891 -4.7803 -0.0347 13 6 3.7467 -5.6576 -0.6114 14 1 3.7225 -5.6017 -1.6996 15 7 3.8733 -7.0463 -0.1625 16 6 3.2852 -8.0370 -0.8619 17 8 2.6514 -7.7787 -1.8632 18 6 3.4150 -9.4655 -0.3998 19 16 2.5228 -10.5518 -1.5400 20 6 2.8322 -12.1118 -0.7815 21 1 3.4245 -12.1659 0.1200 22 6 2.3156 -13.2712 -1.3431 23 7 2.5472 -14.4367 -0.7767 24 14 1.2918 -13.1777 -2.9027 25 1 2.1808 -13.2968 -4.0863 26 1 0.3030 -14.2855 -2.9130 27 1 0.5778 -11.8765 -2.9489 28 6 2.4952 -4.9860 0.0076 29 1 -0.3634 0.0026 1.0276 30 1 -0.3634 0.8887 -0.5161 31 1 -0.3634 -0.8913 -0.5116 32 1 4.5297 -1.3157 -0.0082 33 1 4.5624 -2.8118 -0.8903 34 1 4.5764 -2.8427 0.8952 35 1 5.1548 -5.1054 0.9712 36 1 5.7596 -4.8010 -0.6903 37 1 4.3804 -7.2529 0.6382 38 1 2.9935 -9.5634 0.6006 39 1 4.4679 -9.7466 -0.3797 40 1 2.1859 -15.2469 -1.1691 41 1 1.6150 -5.1892 -0.6023 42 1 2.3407 -5.3384 1.0274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491866979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:59 Heat of formation + Delta-G solvation = 12.611040 kcal Electronic energy + Delta-G solvation = -25820.169161 eV Core-core repulsion = 21928.444670 eV Total energy + Delta-G solvation = -3891.724491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.91710 -40.27164 -39.10032 -37.49061 -34.39962 -33.34825 -32.45096 -31.71817 -30.71786 -29.68558 -28.39809 -27.82476 -25.63080 -24.82238 -22.37033 -21.91620 -20.80784 -20.52925 -19.93862 -18.17022 -17.74006 -17.09444 -17.06244 -16.32910 -15.80615 -15.61542 -15.07987 -15.06827 -14.90330 -14.75764 -14.32019 -13.94570 -13.76332 -13.43216 -13.25880 -13.18065 -13.11461 -12.93416 -12.80740 -12.47705 -12.29356 -11.99728 -11.73413 -11.33186 -11.28049 -11.26079 -11.01553 -10.63048 -10.12438 -9.94970 -9.87180 -9.62584 -9.30890 -9.22450 -9.01241 -8.89489 -8.52276 -6.93774 -6.30180 -4.02298 1.03876 1.75905 2.18114 2.51387 2.80138 2.86949 3.12105 3.28420 3.33122 3.50505 3.60726 3.96057 4.03506 4.10165 4.24318 4.32273 4.44020 4.66646 4.70576 4.74465 4.83987 4.91353 4.96503 4.99510 5.08979 5.25218 5.30178 5.42035 5.43907 5.51448 5.65593 5.70658 5.73429 5.78564 5.91700 5.97257 6.11882 6.41043 6.59807 7.05309 7.22710 7.47430 7.92788 7.97722 8.38169 8.40127 9.15984 10.78941 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.001978 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.262140 B =14152.820510 C =14784.392107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.137 3.863 3 N -0.300 5.300 4 N -0.462 5.462 5 H 0.444 0.556 6 C 0.092 3.908 7 C -0.282 4.282 8 C 0.609 3.391 9 O -0.533 6.533 10 N -0.616 5.616 11 C 0.095 3.905 12 C -0.139 4.139 13 C 0.137 3.863 14 H 0.107 0.893 15 N -0.727 5.727 16 C 0.532 3.468 17 O -0.513 6.513 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.096 3.904 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.195 0.805 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.402 0.598 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.455 30.247 4.773 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 N -0.124 5.124 4 N -0.166 5.166 5 H 0.289 0.711 6 C -0.061 4.061 7 C -0.297 4.297 8 C 0.399 3.601 9 O -0.410 6.410 10 N -0.351 5.351 11 C -0.029 4.029 12 C -0.178 4.178 13 C 0.030 3.970 14 H 0.125 0.875 15 N -0.382 5.382 16 C 0.319 3.681 17 O -0.387 6.387 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.027 4.027 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.212 0.788 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.237 0.763 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.677 31.659 3.096 32.503 hybrid contribution 1.332 -1.262 1.042 2.110 sum 8.009 30.397 4.138 31.705 Atomic orbital electron populations 1.20389 0.85437 1.04317 1.03780 1.22530 0.97518 0.88513 0.94537 1.77198 0.86256 1.22425 1.26471 1.46154 1.07908 1.05550 1.57017 0.71122 1.23904 0.99622 0.85686 0.96869 1.20214 0.92215 0.94243 1.23072 1.16860 0.84653 0.82776 0.75859 1.90790 1.15714 1.83773 1.50679 1.48130 1.06052 1.06447 1.74479 1.22322 0.80936 0.98085 1.01522 1.22968 0.98356 0.93438 1.03022 1.21966 0.93431 0.81001 1.00614 0.87539 1.45836 1.56379 1.05231 1.30719 1.20366 0.77932 0.86709 0.83140 1.90726 1.39189 1.83905 1.24833 1.23278 1.05703 0.93569 1.04945 1.84836 1.68387 1.01782 1.36436 1.22307 1.39523 0.89959 1.15152 0.89361 1.24718 0.95103 0.94235 0.97278 1.69939 1.43999 0.97867 1.39821 0.86736 0.81318 0.80397 0.83414 1.19219 1.19926 1.15877 1.22678 0.99499 0.78703 1.01852 0.90005 0.90861 0.88421 0.78815 0.90710 0.90698 0.89504 0.88843 0.76278 0.88304 0.88385 0.91928 0.89256 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.92 36.00 0.36 -0.38 16 2 C 0.14 1.41 7.26 -82.02 -0.60 0.81 16 3 N -0.30 -2.86 12.63 33.90 0.43 -2.44 16 4 N -0.46 -2.65 7.29 30.85 0.22 -2.42 16 5 H 0.44 0.86 8.96 -182.72 -1.64 -0.78 16 6 C 0.09 0.52 10.50 -16.56 -0.17 0.34 16 7 C -0.28 -2.71 6.10 -105.07 -0.64 -3.36 16 8 C 0.61 7.20 7.85 -12.52 -0.10 7.10 16 9 O -0.53 -8.24 15.18 5.27 0.08 -8.16 16 10 N -0.62 -5.80 3.33 -171.74 -0.57 -6.37 16 11 C 0.09 0.45 4.98 -3.04 -0.02 0.44 16 12 C -0.14 -0.67 6.59 -24.88 -0.16 -0.83 16 13 C 0.14 1.28 3.37 -65.77 -0.22 1.06 16 14 H 0.11 1.21 7.63 -51.93 -0.40 0.81 16 15 N -0.73 -7.79 5.21 -51.72 -0.27 -8.06 16 16 C 0.53 8.68 7.85 -10.99 -0.09 8.59 16 17 O -0.51 -10.48 15.55 5.56 0.09 -10.39 16 18 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 19 S -0.14 -3.49 18.55 -107.50 -1.99 -5.48 16 20 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 24 Si 0.86 21.65 27.74 -169.99 -4.72 16.93 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.23 -5.94 6.74 56.52 0.38 -5.56 16 28 C 0.10 1.05 6.60 -2.52 -0.02 1.04 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.03 6.56 -51.93 -0.34 0.69 16 32 H 0.20 0.34 4.42 -52.49 -0.23 0.11 16 33 H 0.07 0.24 6.85 -51.93 -0.36 -0.12 16 34 H 0.07 0.20 7.01 -51.93 -0.36 -0.16 16 35 H 0.09 0.31 8.00 -51.93 -0.42 -0.11 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 3.05 8.54 -40.82 -0.35 2.70 16 38 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.09 1.26 8.04 -51.93 -0.42 0.85 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -38.81 364.31 -8.31 -47.11 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.62 Total: -1.63 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.22 Total: 0.96 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.59 Total: -44.82 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.56 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.72 Total: 16.93 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.81 -8.31 -47.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491866979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.722 kcal (2) G-P(sol) polarization free energy of solvation -38.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds