Wall clock time and date at job start Tue Mar 31 2020 20:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30454 * 125.98786 * 2 1 4 4 N 1.39935 * 108.89418 * 180.26022 * 3 2 1 5 5 H 0.97002 * 125.75430 * 179.77412 * 4 3 2 6 6 C 1.34258 * 108.49320 * 359.75501 * 4 3 2 7 7 C 1.38046 * 107.41759 * 359.97438 * 6 4 3 8 8 C 1.47432 * 126.41102 * 179.97438 * 7 6 4 9 9 O 1.21612 * 119.99341 * 180.02562 * 8 7 6 10 10 N 1.34768 * 120.00533 * 0.03064 * 8 7 6 11 11 C 1.47024 * 125.64622 * 359.95798 * 10 8 7 12 12 C 1.54364 * 107.28778 * 181.12815 * 11 10 8 13 13 C 1.55150 * 102.92467 * 22.13781 * 12 11 10 14 14 H 1.08998 * 111.00640 * 82.64069 * 13 12 11 15 15 N 1.46500 * 111.00730 * 206.45445 * 13 12 11 16 16 C 1.34779 * 120.00169 * 201.81530 * 15 13 12 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00037 * 180.02562 * 16 15 13 19 19 S 1.81000 * 109.46881 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31638 * 119.99705 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00469 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46939 * 90.00148 * 24 22 20 26 26 H 1.48496 * 109.47561 * 210.00294 * 24 22 20 27 27 H 1.48498 * 109.46932 * 330.00626 * 24 22 20 28 28 C 1.47419 * 125.65351 * 179.97438 * 10 8 7 29 29 H 1.08999 * 109.47272 * 270.14441 * 1 2 3 30 30 H 1.09004 * 109.47431 * 30.14430 * 1 2 3 31 31 H 1.08999 * 109.47271 * 150.14498 * 1 2 3 32 32 H 1.07996 * 126.29027 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.88050 * 300.51108 * 11 10 8 34 34 H 1.09002 * 109.88732 * 61.67586 * 11 10 8 35 35 H 1.09002 * 110.70704 * 263.78754 * 12 11 10 36 36 H 1.09000 * 110.75869 * 140.50384 * 12 11 10 37 37 H 0.96996 * 119.99986 * 21.82127 * 15 13 12 38 38 H 1.09000 * 109.47247 * 60.00371 * 18 16 15 39 39 H 1.09001 * 109.47358 * 299.99798 * 18 16 15 40 40 H 0.96996 * 119.99710 * 179.97438 * 23 22 20 41 41 H 1.09005 * 110.36922 * 36.99681 * 28 10 8 42 42 H 1.09000 * 110.36549 * 274.67596 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 -0.0060 5 1 4.3842 1.2301 -0.0104 6 6 3.6439 -0.6979 -0.0043 7 6 2.3372 -1.1432 0.0034 8 6 1.8916 -2.5485 0.0073 9 8 0.7039 -2.8097 0.0136 10 7 2.8004 -3.5437 0.0039 11 6 4.2604 -3.3708 -0.0045 12 6 4.8891 -4.7803 -0.0347 13 6 3.7467 -5.6576 -0.6114 14 1 3.7225 -5.6017 -1.6996 15 7 3.8733 -7.0463 -0.1625 16 6 3.2852 -8.0370 -0.8619 17 8 2.6514 -7.7787 -1.8632 18 6 3.4150 -9.4655 -0.3998 19 16 2.5228 -10.5518 -1.5400 20 6 2.8322 -12.1118 -0.7815 21 1 3.4245 -12.1659 0.1200 22 6 2.3156 -13.2712 -1.3431 23 7 2.5472 -14.4367 -0.7767 24 14 1.2918 -13.1777 -2.9027 25 1 2.1808 -13.2968 -4.0863 26 1 0.3030 -14.2855 -2.9130 27 1 0.5778 -11.8765 -2.9489 28 6 2.4952 -4.9860 0.0076 29 1 -0.3634 0.0026 1.0276 30 1 -0.3634 0.8887 -0.5161 31 1 -0.3634 -0.8913 -0.5116 32 1 4.5297 -1.3157 -0.0082 33 1 4.5624 -2.8118 -0.8903 34 1 4.5764 -2.8427 0.8952 35 1 5.1548 -5.1054 0.9712 36 1 5.7596 -4.8010 -0.6903 37 1 4.3804 -7.2529 0.6382 38 1 2.9935 -9.5634 0.6006 39 1 4.4679 -9.7466 -0.3797 40 1 2.1859 -15.2469 -1.1691 41 1 1.6150 -5.1892 -0.6023 42 1 2.3407 -5.3384 1.0274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491866979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:58 Heat of formation + Delta-G solvation = -18.809792 kcal Electronic energy + Delta-G solvation = -25821.531671 eV Core-core repulsion = 21928.444670 eV Total energy + Delta-G solvation = -3893.087001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.52877 -41.16204 -40.18494 -38.38744 -35.43281 -34.65849 -33.98242 -32.61929 -31.37434 -30.75492 -29.12855 -28.69828 -27.82354 -25.51249 -23.03905 -22.58597 -21.79247 -21.41021 -20.57692 -19.90793 -18.61743 -18.06168 -17.88788 -17.42329 -17.09221 -16.69531 -16.51342 -16.23854 -15.94977 -15.49264 -15.34497 -15.03391 -14.88608 -14.67872 -14.47182 -14.01197 -13.92821 -13.89797 -13.76735 -13.48146 -13.33806 -13.13511 -13.01037 -12.70017 -12.56332 -12.44154 -11.97165 -11.87001 -11.81390 -11.16235 -11.06724 -10.95675 -10.56537 -10.51182 -10.25503 -9.97570 -9.61142 -8.98135 -8.50767 -6.20944 0.50180 0.99575 1.02647 1.31322 1.46023 1.51467 1.55808 1.70399 1.94503 2.25073 2.34072 2.37865 2.73842 2.87616 3.33124 3.46342 3.59305 3.68115 3.89851 4.02594 4.13873 4.16006 4.22125 4.27810 4.30909 4.40944 4.50350 4.58867 4.71670 4.72967 4.81273 4.84947 4.93487 5.03558 5.11598 5.21131 5.41472 5.48110 5.71856 6.12761 6.24455 6.41248 6.47020 6.55762 6.94928 7.16777 7.20434 8.61368 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.001978 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.262140 B =14152.820510 C =14784.392107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.117 3.883 3 N -0.325 5.325 4 N -0.445 5.445 5 H 0.463 0.537 6 C 0.130 3.870 7 C -0.317 4.317 8 C 0.600 3.400 9 O -0.588 6.588 10 N -0.614 5.614 11 C 0.083 3.917 12 C -0.121 4.121 13 C 0.135 3.865 14 H 0.086 0.914 15 N -0.698 5.698 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.110 4.110 19 S -0.182 6.182 20 C -0.526 4.526 21 H 0.065 0.935 22 C 0.045 3.955 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.261 1.261 27 H -0.239 1.239 28 C 0.097 3.903 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.423 0.577 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.276 0.724 41 H 0.042 0.958 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.750 32.507 5.344 34.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 N -0.149 5.149 4 N -0.151 5.151 5 H 0.312 0.688 6 C -0.025 4.025 7 C -0.332 4.332 8 C 0.392 3.608 9 O -0.470 6.470 10 N -0.347 5.347 11 C -0.039 4.039 12 C -0.159 4.159 13 C 0.028 3.972 14 H 0.104 0.896 15 N -0.353 5.353 16 C 0.322 3.678 17 O -0.439 6.439 18 C -0.261 4.261 19 S 0.044 5.956 20 C -0.673 4.673 21 H 0.083 0.917 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.186 1.186 26 H -0.185 1.185 27 H -0.163 1.163 28 C -0.028 4.028 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.257 0.743 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.261 0.739 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.064 33.968 3.714 35.622 hybrid contribution 0.439 -1.838 0.974 2.126 sum 10.503 32.130 4.688 34.127 Atomic orbital electron populations 1.20307 0.85928 1.03706 1.03749 1.22664 0.97898 0.89308 0.95205 1.77132 0.87876 1.22533 1.27314 1.46201 1.07390 1.06143 1.55361 0.68839 1.24424 0.99312 0.85596 0.93125 1.20140 0.94024 0.92747 1.26247 1.17283 0.84286 0.84022 0.75214 1.90754 1.18145 1.84668 1.53408 1.48146 1.08115 1.05069 1.73407 1.22786 0.77614 0.98994 1.04462 1.23012 0.96846 0.91548 1.04522 1.22033 0.95159 0.80291 0.99702 0.89601 1.45528 1.54507 1.04884 1.30348 1.20030 0.77979 0.86827 0.82933 1.90722 1.41630 1.84394 1.27121 1.23269 1.05867 0.93397 1.03582 1.84812 1.70300 1.01535 1.38912 1.22455 1.38623 0.91874 1.14389 0.91681 1.25543 0.96272 0.94079 1.00126 1.70014 1.45353 0.98621 1.41422 0.85888 0.80168 0.80419 0.80040 1.18619 1.18535 1.16301 1.22506 0.98698 0.80463 1.01083 0.89822 0.89778 0.90571 0.74265 0.88228 0.87127 0.87144 0.86260 0.73866 0.86729 0.86238 0.91424 0.93899 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 9.92 71.24 0.71 -0.84 16 2 C 0.12 2.38 7.26 43.51 0.32 2.69 16 3 N -0.32 -5.71 12.63 -46.68 -0.59 -6.30 16 4 N -0.44 -3.53 7.29 -56.32 -0.41 -3.94 16 5 H 0.46 -0.16 8.96 -213.42 -1.91 -2.07 16 6 C 0.13 0.93 10.50 84.28 0.88 1.81 16 7 C -0.32 -5.66 6.10 -20.15 -0.12 -5.78 16 8 C 0.60 14.24 7.85 86.67 0.68 14.92 16 9 O -0.59 -19.65 15.18 -4.07 -0.06 -19.72 16 10 N -0.61 -10.58 3.33 -815.53 -2.71 -13.29 16 11 C 0.08 0.37 4.98 86.74 0.43 0.80 16 12 C -0.12 -0.52 6.59 31.79 0.21 -0.31 16 13 C 0.13 2.23 3.37 46.39 0.16 2.38 16 14 H 0.09 1.86 7.63 -2.39 -0.02 1.84 16 15 N -0.70 -13.23 5.21 -435.94 -2.27 -15.50 16 16 C 0.54 16.92 7.85 87.66 0.69 17.61 16 17 O -0.56 -23.15 15.55 -3.04 -0.05 -23.20 16 18 C -0.11 -3.88 6.16 71.24 0.44 -3.44 16 19 S -0.18 -9.05 18.55 -56.49 -1.05 -10.10 16 20 C -0.53 -30.17 10.04 67.95 0.68 -29.49 16 21 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 22 C 0.05 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -55.43 13.97 21.65 0.30 -55.13 16 24 Si 0.91 45.09 27.74 68.60 1.90 46.99 16 25 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 28 C 0.10 2.10 6.60 86.86 0.57 2.67 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.83 6.56 -2.39 -0.02 1.81 16 32 H 0.24 -0.77 4.42 -2.91 -0.01 -0.79 16 33 H 0.10 0.02 6.85 -2.39 -0.02 0.01 16 34 H 0.11 -0.18 7.01 -2.39 -0.02 -0.19 16 35 H 0.11 0.05 8.00 -2.39 -0.02 0.03 16 36 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.42 4.72 8.54 -92.71 -0.79 3.93 16 38 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.12 3.71 8.14 -2.40 -0.02 3.70 16 40 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.04 1.32 8.04 -2.38 -0.02 1.30 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -91.81 364.31 -0.48 -92.28 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -1.65 Total: 1.77 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.11 Total: 6.14 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -5.68 Total: -94.16 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.11 Total: -42.91 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.90 Total: 46.99 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -91.81 -0.48 -92.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491866979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.471 kcal (2) G-P(sol) polarization free energy of solvation -91.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds