Wall clock time and date at job start Tue Mar 31 2020 20:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38547 * 120.01385 * 2 1 4 4 C 1.40079 * 117.81630 * 179.74828 * 3 2 1 5 5 C 1.48134 * 121.14753 * 180.27406 * 4 3 2 6 6 O 1.21520 * 119.99964 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99963 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99845 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.47142 * 325.00215 * 8 7 5 10 10 C 1.52997 * 109.47252 * 85.00070 * 8 7 5 11 11 C 1.52999 * 109.47295 * 205.00340 * 8 7 5 12 12 N 1.46502 * 109.46856 * 54.99976 * 11 8 7 13 13 C 1.34781 * 119.99887 * 180.02562 * 12 11 8 14 14 O 1.21285 * 119.99623 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00088 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47208 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00132 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99583 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99910 * 180.02562 * 17 16 15 20 20 N 1.31629 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99788 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47388 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47215 * 120.00244 * 21 19 17 24 24 H 1.48505 * 109.47077 * 240.00059 * 21 19 17 25 25 C 1.39770 * 117.70689 * 0.24960 * 4 3 2 26 26 N 1.31896 * 119.65260 * 0.02562 * 25 4 3 27 27 N 1.28274 * 122.33335 * 359.97438 * 26 25 4 28 28 H 1.08995 * 109.47000 * 89.99753 * 1 2 3 29 29 H 1.09000 * 109.47180 * 210.00217 * 1 2 3 30 30 H 1.09009 * 109.47087 * 330.00036 * 1 2 3 31 31 H 1.08002 * 121.09585 * 0.02735 * 3 2 1 32 32 H 0.96996 * 120.00096 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47607 * 300.00204 * 10 8 7 34 34 H 1.09005 * 109.46929 * 60.00014 * 10 8 7 35 35 H 1.09000 * 109.47196 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.47398 * 174.99669 * 11 8 7 37 37 H 1.08999 * 109.46723 * 295.00406 * 11 8 7 38 38 H 0.96994 * 120.00332 * 0.02562 * 12 11 8 39 39 H 1.08997 * 109.47428 * 299.99814 * 15 13 12 40 40 H 1.08999 * 109.46862 * 60.00271 * 15 13 12 41 41 H 0.97000 * 119.99432 * 180.02562 * 20 19 17 42 42 H 1.07997 * 120.17014 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1460 0.0054 5 6 4.4140 2.3835 0.0119 6 8 3.8688 3.4695 0.0120 7 7 5.7595 2.3048 0.0176 8 6 6.5647 3.5286 0.0234 9 1 6.0637 4.2960 -0.5668 10 6 6.7338 4.0211 1.4620 11 6 7.9398 3.2373 -0.5809 12 7 7.7734 2.6538 -1.9144 13 6 8.8564 2.3135 -2.6409 14 8 9.9687 2.4908 -2.1909 15 6 8.6854 1.7128 -4.0124 16 16 10.3121 1.3682 -4.7274 17 6 9.8268 0.6937 -6.2812 18 1 8.7791 0.6051 -6.5277 19 6 10.7910 0.2764 -7.1881 20 7 12.0680 0.3840 -6.8873 21 14 10.2765 -0.4379 -8.8356 22 1 8.7946 -0.4509 -8.9285 23 1 10.8345 0.3940 -9.9319 24 1 10.7917 -1.8256 -8.9560 25 6 4.2017 -0.1155 0.0051 26 7 3.4483 -1.1980 -0.0007 27 7 2.1668 -1.1420 -0.0057 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5139 31 1 1.6782 2.1453 0.0004 32 1 6.1946 1.4379 0.0171 33 1 5.7542 4.2287 1.8926 34 1 7.2348 3.2537 2.0522 35 1 7.3333 4.9314 1.4664 36 1 8.5066 4.1651 -0.6585 37 1 8.4763 2.5360 0.0582 38 1 6.8840 2.5123 -2.2744 39 1 8.1185 0.7851 -3.9346 40 1 8.1490 2.4139 -4.6518 41 1 12.7418 0.0927 -7.5213 42 1 5.2781 -0.2032 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502835395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:51 Heat of formation + Delta-G solvation = -49.389301 kcal Electronic energy + Delta-G solvation = -25557.926941 eV Core-core repulsion = 21663.513913 eV Total energy + Delta-G solvation = -3894.413028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.41570 -41.06733 -40.37361 -37.60612 -35.26034 -34.86643 -34.59129 -34.42099 -32.19616 -30.79252 -29.32304 -27.74846 -26.94084 -26.35074 -24.94902 -22.68232 -21.78898 -21.74038 -19.90753 -19.37243 -18.71490 -17.80382 -17.57775 -17.39840 -17.02416 -16.88403 -16.63829 -16.44636 -15.92729 -15.91472 -15.59454 -14.88909 -14.76736 -14.54524 -14.50123 -14.20484 -13.87904 -13.85753 -13.68984 -13.26492 -13.25648 -13.16578 -12.99520 -12.91999 -12.60309 -12.16948 -12.04525 -11.71723 -11.67719 -11.40810 -11.16514 -11.00678 -10.87318 -10.76209 -10.38399 -10.27862 -10.17950 -8.66360 -8.35725 -6.12947 -0.83991 -0.26020 1.26313 1.40470 1.46119 1.53595 1.57183 1.59010 1.73365 2.23199 2.27856 2.45694 2.87513 2.98726 3.13262 3.30752 3.33374 3.43703 3.52586 3.71627 3.94109 4.03416 4.10087 4.20876 4.28478 4.32115 4.50755 4.56689 4.60528 4.66649 4.73214 4.76463 4.83392 4.93284 4.98432 5.22057 5.24659 5.28052 5.38279 5.41717 6.19298 6.20209 6.41295 6.86462 7.06303 7.19484 7.51148 8.73550 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.010742 B = 0.002466 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.955004 B =11352.856054 C =13370.557465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.068 3.932 3 C -0.054 4.054 4 C -0.135 4.135 5 C 0.573 3.427 6 O -0.550 6.550 7 N -0.706 5.706 8 C 0.143 3.857 9 H 0.095 0.905 10 C -0.158 4.158 11 C 0.113 3.887 12 N -0.715 5.715 13 C 0.538 3.462 14 O -0.559 6.559 15 C -0.133 4.133 16 S -0.147 6.147 17 C -0.545 4.545 18 H 0.081 0.919 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.997 3.003 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.066 3.934 26 N -0.268 5.268 27 N -0.260 5.260 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.180 0.820 32 H 0.414 0.586 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.412 0.588 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.696 4.411 18.018 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.084 4.084 4 C -0.149 4.149 5 C 0.359 3.641 6 O -0.428 6.428 7 N -0.359 5.359 8 C 0.039 3.961 9 H 0.113 0.887 10 C -0.216 4.216 11 C -0.011 4.011 12 N -0.369 5.369 13 C 0.324 3.676 14 O -0.437 6.437 15 C -0.284 4.284 16 S 0.080 5.920 17 C -0.693 4.693 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.100 4.100 26 N -0.107 5.107 27 N -0.102 5.102 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.197 0.803 32 H 0.252 0.748 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.248 0.752 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -22.096 3.803 18.738 29.220 hybrid contribution -0.996 0.401 -1.672 1.987 sum -23.092 4.204 17.066 29.020 Atomic orbital electron populations 1.20885 0.84390 1.05617 1.05105 1.23497 1.01053 0.89175 0.94069 1.22788 0.93079 1.01341 0.91211 1.21231 0.95675 0.94807 1.03216 1.17872 0.82487 0.87588 0.76161 1.90812 1.72320 1.29293 1.50349 1.45964 1.05091 1.11045 1.73830 1.21238 0.89332 0.86833 0.98725 0.88680 1.22083 1.02879 1.02839 0.93810 1.21786 0.96409 1.00290 0.82571 1.45726 1.08666 1.64630 1.17907 1.19946 0.84498 0.77182 0.86019 1.90712 1.26368 1.54555 1.72073 1.23389 1.03701 1.04729 0.96589 1.85532 1.06407 1.81648 1.18384 1.23221 0.95922 1.47782 1.02408 0.90099 1.26093 0.94379 0.95568 1.03066 1.70179 1.01076 1.45868 1.37530 0.84933 0.78938 0.77784 0.76475 1.18189 1.19944 1.19940 1.24874 1.03581 0.88232 0.93264 1.73018 0.99689 1.28126 1.09854 1.72804 1.02148 1.26581 1.08713 0.88329 0.89535 0.87572 0.80285 0.74835 0.92220 0.90884 0.89747 0.89733 0.90095 0.75180 0.87212 0.87597 0.91989 0.78422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.19 71.24 0.73 0.05 16 2 C 0.07 0.95 6.86 42.62 0.29 1.24 16 3 C -0.05 -0.70 9.43 22.79 0.22 -0.48 16 4 C -0.14 -1.90 5.92 -19.83 -0.12 -2.01 16 5 C 0.57 8.44 7.77 86.87 0.67 9.11 16 6 O -0.55 -11.33 16.15 -3.78 -0.06 -11.39 16 7 N -0.71 -7.63 4.48 -445.13 -1.99 -9.63 16 8 C 0.14 1.71 2.73 44.99 0.12 1.83 16 9 H 0.10 1.34 7.58 -2.38 -0.02 1.32 16 10 C -0.16 -1.59 9.48 71.98 0.68 -0.91 16 11 C 0.11 1.82 5.23 86.38 0.45 2.27 16 12 N -0.71 -14.78 5.39 -463.05 -2.49 -17.28 16 13 C 0.54 17.84 7.85 87.66 0.69 18.53 16 14 O -0.56 -23.74 15.86 -3.05 -0.05 -23.79 16 15 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 16 S -0.15 -7.93 20.57 -56.49 -1.16 -9.09 16 17 C -0.55 -30.71 9.50 67.95 0.65 -30.06 16 18 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -55.31 13.22 21.65 0.29 -55.03 16 21 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.07 0.97 10.84 85.05 0.92 1.89 16 26 N -0.27 -5.60 11.49 -56.52 -0.65 -6.25 16 27 N -0.26 -5.31 11.40 -47.69 -0.54 -5.85 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.21 8.09 -2.38 -0.02 0.19 16 31 H 0.18 1.66 7.80 -2.91 -0.02 1.63 16 32 H 0.41 3.11 6.76 -92.71 -0.63 2.48 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 38 H 0.41 6.56 8.14 -92.71 -0.75 5.81 16 39 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 40 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.20 1.61 6.53 -2.91 -0.02 1.60 16 Total: -1.00 -82.76 381.19 1.26 -81.49 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -0.31 Total: 13.27 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 6.21 Total: -1.83 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -5.40 Total: -94.04 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.11 Total: -35.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -82.76 1.26 -81.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502835395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.104 kcal (2) G-P(sol) polarization free energy of solvation -82.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds